6-30595443-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595443
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595443
    reference: chr 6
allele count: 1
allele frequency: 8.602742554326319e-6
allele num: 116242
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.199G>A
  hgvsp: ENSP00000332374.8:p.Ala67Thr
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.199G>A
  hgvsp: ENSP00000324459.5:p.Ala67Thr
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.192G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.199G>A
  hgvsp: ENSP00000365668.4:p.Ala67Thr
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.165G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.170G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.199G>A
  hgvsp: ENSP00000324222.7:p.Ala67Thr
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.163G>A
  hgvsp: ENSP00000327832.5:p.Ala55Thr
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.199G>A
  hgvsp: ENSP00000365661.2:p.Ala67Thr
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.199G>A
  hgvsp: ENSP00000365666.4:p.Ala67Thr
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1067
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala55Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

6-30595456-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595456
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595456
    reference: chr 6
allele count: 1
allele frequency: 8.601558602418759e-6
allele num: 116258
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.212A>T
  hgvsp: ENSP00000324459.5:p.Gln71Leu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.212A>T
  hgvsp: ENSP00000365666.4:p.Gln71Leu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.183A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.205A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.212A>T
  hgvsp: ENSP00000324222.7:p.Gln71Leu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.176A>T
  hgvsp: ENSP00000327832.5:p.Gln59Leu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.212A>T
  hgvsp: ENSP00000365668.4:p.Gln71Leu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.178A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.212A>T
  hgvsp: ENSP00000365661.2:p.Gln71Leu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.212A>T
  hgvsp: ENSP00000332374.8:p.Gln71Leu
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5552
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6490
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5685
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gln59Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

6-30595463-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595463
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595463
    reference: chr 6
allele count: 3
allele frequency: 2.58024563938487e-5
allele num: 116268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.219C>T
  hgvsp: ENST00000319027.5:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.219C>T
  hgvsp: ENST00000329992.8:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.190C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.219C>T
  hgvsp: ENST00000376485.4:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.183C>T
  hgvsp: ENST00000330083.5:c.183C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.219C>T
  hgvsp: ENST00000318999.7:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.185C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.219C>T
  hgvsp: ENST00000376483.4:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.212C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.219C>T
  hgvsp: ENST00000376478.2:c.219C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5553
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn61Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

6-30595465-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595465
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595465
    reference: chr 6
allele count: 2
allele frequency: 1.720311720483752e-5
allele num: 116258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.221G>A
  hgvsp: ENSP00000332374.8:p.Arg74His
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.221G>A
  hgvsp: ENSP00000324459.5:p.Arg74His
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.221G>A
  hgvsp: ENSP00000324222.7:p.Arg74His
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.187G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.185G>A
  hgvsp: ENSP00000327832.5:p.Arg62His
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.221G>A
  hgvsp: ENSP00000365666.4:p.Arg74His
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.192G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.221G>A
  hgvsp: ENSP00000365661.2:p.Arg74His
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.221G>A
  hgvsp: ENSP00000365668.4:p.Arg74His
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.214G>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6744
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2387
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg62His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

6-30595482-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595482
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595482
    reference: chr 6
allele count: 1
allele frequency: 8.600227045994014e-6
allele num: 116276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.238C>T
  hgvsp: ENSP00000365668.4:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.238C>T
  hgvsp: ENSP00000365661.2:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.231C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.238C>T
  hgvsp: ENSP00000365666.4:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.209C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.238C>T
  hgvsp: ENSP00000324222.7:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.238C>T
  hgvsp: ENSP00000324459.5:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.202C>T
  hgvsp: ENSP00000327832.5:p.Leu68Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.204C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.238C>T
  hgvsp: ENSP00000332374.8:p.Leu80Phe
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4144
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6470
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46054
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu68Phe
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: DP

6-30595490-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595490
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595490
    reference: chr 6
allele count: 2
allele frequency: 1.720015824145582e-5
allele num: 116278
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.246C>G
  hgvsp: ENSP00000324459.5:p.Asp82Glu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.246C>G
  hgvsp: ENSP00000332374.8:p.Asp82Glu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.246C>G
  hgvsp: ENSP00000365668.4:p.Asp82Glu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.246C>G
  hgvsp: ENSP00000324222.7:p.Asp82Glu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.246C>G
  hgvsp: ENSP00000365666.4:p.Asp82Glu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.217C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.210C>G
  hgvsp: ENSP00000327832.5:p.Asp70Glu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.239C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.246C>G
  hgvsp: ENSP00000365661.2:p.Asp82Glu
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.212C>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1112
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 762
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6745
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6489
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6471
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5687
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46054
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp70Glu
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: DP

6-30595498-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595498
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595498
    reference: chr 6
allele count: 1
allele frequency: 8.600670852326481e-6
allele num: 116270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.225C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.254C>T
  hgvsp: ENSP00000365666.4:p.Ala85Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.218C>T
  hgvsp: ENSP00000327832.5:p.Ala73Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.254C>T
  hgvsp: ENSP00000365661.2:p.Ala85Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.220C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.254C>T
  hgvsp: ENSP00000324222.7:p.Ala85Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.254C>T
  hgvsp: ENSP00000365668.4:p.Ala85Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.247C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.254C>T
  hgvsp: ENSP00000324459.5:p.Ala85Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.254C>T
  hgvsp: ENSP00000332374.8:p.Ala85Val
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2232
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4146
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala73Val
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

6-30595501-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595501
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595501
    reference: chr 6
allele count: 1
allele frequency: 8.601558602418759e-6
allele num: 116258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.257G>A
  hgvsp: ENSP00000365668.4:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.228G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.250G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.223G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.257G>A
  hgvsp: ENSP00000332374.8:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.257G>A
  hgvsp: ENSP00000324459.5:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.257G>A
  hgvsp: ENSP00000365661.2:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.221G>A
  hgvsp: ENSP00000327832.5:p.Arg74Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.257G>A
  hgvsp: ENSP00000365666.4:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.257G>A
  hgvsp: ENSP00000324222.7:p.Arg86Gln
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2034
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1077
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4357
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5690
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1525
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg74Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum

6-30595507-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595507
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595507
    reference: chr 6
allele count: 1
allele frequency: 8.601114704465699e-6
allele num: 116264
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.260+3G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.260+3G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.253+3G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.260+3G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.260+3G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.224+3G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.260+3G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.226+3G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.260+3G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.231+3G>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6491
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 7.75e1
  variant carriers: 0
hgvs: c.224+3G>A
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD

6-30595515-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595515
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595515
    reference: chr 6
allele count: 1
allele frequency: 8.60229853416833e-6
allele num: 116248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.260+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.253+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.226+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.224+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.260+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.260+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.260+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.260+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.231+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.260+11C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6473
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ

6-30595516-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595516
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595516
    reference: chr 6
allele count: 1
allele frequency: 8.601558602418759e-6
allele num: 116258
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.224+12A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.260+12A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.231+12A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.260+12A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.260+12A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.253+12A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.260+12A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.226+12A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.260+12A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.260+12A>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6746
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2030
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6492
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3393
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5686
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1540
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6472
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2231
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1522
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

6-30595525-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595525
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595525
    reference: chr 6
allele count: 883
allele frequency: 7.595437576341459e-3
allele num: 116254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.260+21C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.253+21C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.260+21C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.260+21C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.260+21C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.226+21C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.260+21C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.231+21C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.224+21C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.260+21C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 8.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 4.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 8.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 3247
  bin: 9.75e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 5547
  bin: 6.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 7.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 6704
  bin: 5.25e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5626
  bin: 4.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 6.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 4096
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 853
  bin: 9.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 3425
  bin: 7.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 6421
  bin: 5.75e1
  variant carriers: 42
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 739
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2357
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 13
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ

6-30595531-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595531
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595531
    reference: chr 6
allele count: 1
allele frequency: 8.602150537634409e-6
allele num: 116250
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.224+27A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.260+27A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.260+27A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.253+27A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.226+27A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.260+27A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.260+27A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.260+27A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.231+27A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.260+27A>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6689
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3430
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4110
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5635
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6438
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1995
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3176
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1578
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5541
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1316
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1649
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS

6-30595533-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595533
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595533
    reference: chr 6
allele count: 1
allele frequency: 8.60244653579478e-6
allele num: 116246
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.260+29A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.224+29A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.260+29A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.260+29A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.231+29A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.260+29A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.260+29A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.253+29A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.226+29A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.260+29A>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6690
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5632
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6436
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1990
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5543
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: A
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-30595540-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595540
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595540
    reference: chr 6
allele count: 1
allele frequency: 8.602150537634409e-6
allele num: 116250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.260+36T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.260+36T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.231+36T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.253+36T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.260+36T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.260+36T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.260+36T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.260+36T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.226+36T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.224+36T>C
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2290
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6454
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6441
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4104
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1055
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46159
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

6-30595545-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595545
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595545
    reference: chr 6
allele count: 2
allele frequency: 1.720578114246387e-5
allele num: 116240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.260+41C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.260+41C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.226+41C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.224+41C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.260+41C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.253+41C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.260+41C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.231+41C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.260+41C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.260+41C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4107
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6452
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1577
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5636
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3170
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6691
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6442
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3215
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1110
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5540
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

6-30595583-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595583
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595583
    reference: chr 6
allele count: 1
allele frequency: 8.604815254616483e-6
allele num: 116214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.227-45C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.261-45C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.261-45C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.254-45C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.261-45C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.261-45C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.232-45C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.261-45C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.225-45C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.261-45C>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1159
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28734
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

6-30595600-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595600
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595600
    reference: chr 6
allele count: 2
allele frequency: 1.720992668571232e-5
allele num: 116212
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.227-28C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.261-28C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.232-28C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.225-28C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.261-28C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.261-28C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.261-28C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.254-28C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.261-28C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.261-28C>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2636
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28735
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3038
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP

6-30595618-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595618
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595618
    reference: chr 6
allele count: 24
allele frequency: 2.065333379229631e-4
allele num: 116204
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.261-10C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.261-10C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.261-10C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.232-10C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.261-10C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.261-10C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.261-10C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.254-10C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.225-10C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.227-10C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3037
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28742
  bin: 9.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-30595619-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595619
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595619
    reference: chr 6
allele count: 2
allele frequency: 1.721170395869191e-5
allele num: 116200
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.261-9G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.261-9G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.227-9G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.232-9G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.225-9G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.254-9G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.261-9G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.261-9G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.261-9G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.261-9G>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28734
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: QD

6-30595621-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595621
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595621
    reference: chr 6
allele count: 1
allele frequency: 8.605851979345956e-6
allele num: 116200
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.225-7C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.261-7C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.261-7C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.232-7C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.261-7C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.261-7C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.254-7C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.261-7C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.227-7C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.261-7C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28734
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
hgvs: c.225-7C>T
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

6-30595625-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595625
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595625
    reference: chr 6
allele count: 1
allele frequency: 8.606148232297153e-6
allele num: 116196
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.261-3C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.261-3C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.227-3C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.232-3C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.225-3C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.254-3C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.261-3C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.261-3C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.261-3C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.261-3C>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3040
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28735
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.5e0
  variant carriers: 0
hgvs: c.225-3C>G
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

6-30595627-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595627
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595627
    reference: chr 6
allele count: 1
allele frequency: 8.606148232297153e-6
allele num: 116196
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.261-1G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.261-1G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.232-1G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.261-1G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.225-1G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.254-1G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.227-1G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.261-1G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.261-1G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.261-1G>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28735
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3041
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
hgvs: c.225-1G>A
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS

6-30595629-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595629
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595629
    reference: chr 6
allele count: 1
allele frequency: 8.606296366421674e-6
allele num: 116194
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.262G>C
  hgvsp: ENSP00000324222.7:p.Ala88Pro
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.262G>C
  hgvsp: ENSP00000365661.2:p.Ala88Pro
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.233G>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.262G>C
  hgvsp: ENSP00000365666.4:p.Ala88Pro
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.262G>C
  hgvsp: ENSP00000324459.5:p.Ala88Pro
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.262G>C
  hgvsp: ENSP00000332374.8:p.Ala88Pro
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.226G>C
  hgvsp: ENSP00000327832.5:p.Ala76Pro
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.228G>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.255G>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.262G>C
  hgvsp: ENSP00000365668.4:p.Ala88Pro
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 658
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 945
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28735
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3042
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala76Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP

6-30595642-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595642
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595642
    reference: chr 6
allele count: 4
allele frequency: 3.442696319757634e-5
allele num: 116188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.275C>T
  hgvsp: ENSP00000324222.7:p.Ala92Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.275C>T
  hgvsp: ENSP00000324459.5:p.Ala92Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.275C>T
  hgvsp: ENSP00000365666.4:p.Ala92Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.275C>T
  hgvsp: ENSP00000365661.2:p.Ala92Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.239C>T
  hgvsp: ENSP00000327832.5:p.Ala80Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.275C>T
  hgvsp: ENSP00000365668.4:p.Ala92Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.246C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.275C>T
  hgvsp: ENSP00000332374.8:p.Ala92Val
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.268C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.241C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28737
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3043
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala80Val
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

6-30595646-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595646
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595646
    reference: chr 6
allele count: 1
allele frequency: 8.606740799394086e-6
allele num: 116188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.279T>A
  hgvsp: ENST00000319027.5:c.279T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.250T>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.279T>A
  hgvsp: ENST00000318999.7:c.279T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.279T>A
  hgvsp: ENST00000329992.8:c.279T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.272T>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.279T>A
  hgvsp: ENST00000376483.4:c.279T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.279T>A
  hgvsp: ENST00000376478.2:c.279T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.243T>A
  hgvsp: ENST00000330083.5:c.243T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.279T>A
  hgvsp: ENST00000376485.4:c.279T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.245T>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28734
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile81Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

6-30595648-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595648
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595648
    reference: chr 6
allele count: 4
allele frequency: 3.442696319757634e-5
allele num: 116188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.252T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.281T>C
  hgvsp: ENSP00000365661.2:p.Ile94Thr
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.245T>C
  hgvsp: ENSP00000327832.5:p.Ile82Thr
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.281T>C
  hgvsp: ENSP00000365666.4:p.Ile94Thr
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.281T>C
  hgvsp: ENSP00000324222.7:p.Ile94Thr
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.281T>C
  hgvsp: ENSP00000324459.5:p.Ile94Thr
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.281T>C
  hgvsp: ENSP00000332374.8:p.Ile94Thr
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.274T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.247T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.281T>C
  hgvsp: ENSP00000365668.4:p.Ile94Thr
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28736
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ile82Thr
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-30595649-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595649
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595649
    reference: chr 6
allele count: 1
allele frequency: 8.606740799394086e-6
allele num: 116188
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.282T>C
  hgvsp: ENST00000318999.7:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.282T>C
  hgvsp: ENST00000376478.2:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.275T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.282T>C
  hgvsp: ENST00000319027.5:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.282T>C
  hgvsp: ENST00000376483.4:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.246T>C
  hgvsp: ENST00000330083.5:c.246T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.282T>C
  hgvsp: ENST00000376485.4:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.248T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.282T>C
  hgvsp: ENST00000329992.8:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.253T>C
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28736
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile82Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

6-30595658-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595658
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595658
    reference: chr 6
allele count: 13
allele frequency: 1.118895564009433e-4
allele num: 116186
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.291C>G
  hgvsp: ENSP00000365666.4:p.Ile97Met
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.291C>G
  hgvsp: ENSP00000365661.2:p.Ile97Met
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.284C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.291C>G
  hgvsp: ENSP00000324222.7:p.Ile97Met
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.262C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.291C>G
  hgvsp: ENSP00000324459.5:p.Ile97Met
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.255C>G
  hgvsp: ENSP00000327832.5:p.Ile85Met
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.257C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.291C>G
  hgvsp: ENSP00000332374.8:p.Ile97Met
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.291C>G
  hgvsp: ENSP00000365668.4:p.Ile97Met
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28739
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55462
  bin: 9.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile85Met
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

6-30595662-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595662
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595662
    reference: chr 6
allele count: 1
allele frequency: 8.607037113544033e-6
allele num: 116184
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.295G>A
  hgvsp: ENSP00000324222.7:p.Val99Ile
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.295G>A
  hgvsp: ENSP00000332374.8:p.Val99Ile
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.295G>A
  hgvsp: ENSP00000365666.4:p.Val99Ile
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.295G>A
  hgvsp: ENSP00000365661.2:p.Val99Ile
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.261G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.266G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.259G>A
  hgvsp: ENSP00000327832.5:p.Val87Ile
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.295G>A
  hgvsp: ENSP00000324459.5:p.Val99Ile
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.295G>A
  hgvsp: ENSP00000365668.4:p.Val99Ile
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.288G>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28738
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3045
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3769
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3496
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val87Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

6-30595705-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595705
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595705
    reference: chr 6
allele count: 1051
allele frequency: 9.052073105610391e-3
allele num: 116106
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+17G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+17G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+17G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+17G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+17G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+17G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+17G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+17G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+17G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+17G>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3458
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2605
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 9.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 1436
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 29003
  bin: 9.75e1
  variant carriers: 924
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 8.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 8
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

6-30595706-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595706
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595706
    reference: chr 6
allele count: 1
allele frequency: 8.615936035290874e-6
allele num: 116064
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+18C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+18C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+18C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+18C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+18C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+18C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+18C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+18C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+18C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+18C>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28603
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

6-30595707-TAGG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595707
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595704
    reference: chr 6
allele count: 1
allele frequency: 8.614451604010888e-6
allele num: 116084
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+22_314+24delGAG
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+22_321+24delGAG
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+22_321+24delGAG
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+22_321+24delGAG
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+22_285+24delGAG
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+22_292+24delGAG
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+22_287+24delGAG
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+22_321+24delGAG
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+22_321+24delGAG
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+22_321+24delGAG
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28602
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3499
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
reference allele: TAGG
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: QD

6-30595713-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595713
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595713
    reference: chr 6
allele count: 2
allele frequency: 1.723305990211622e-5
allele num: 116056
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+25T>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+25T>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+25T>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+25T>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+25T>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+25T>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+25T>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+25T>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+25T>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+25T>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28602
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2663
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 277
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 341
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

6-30595715-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595715
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595715
    reference: chr 6
allele count: 1
allele frequency: 8.617123948710878e-6
allele num: 116048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+27C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+27C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+27C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+27C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+27C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+27C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+27C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+27C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+27C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+27C>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28605
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

6-30595715-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595715
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595715
    reference: chr 6
allele count: 15
allele frequency: 1.292568592306632e-4
allele num: 116048
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+27C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+27C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+27C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+27C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+27C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+27C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+27C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+27C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+27C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+27C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1604
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3790
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28605
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

6-30595716-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595716
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595716
    reference: chr 6
allele count: 4
allele frequency: 3.447265456676491e-5
allele num: 116034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+28G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+28G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+28G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+28G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+28G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+28G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+28G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+28G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+28G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+28G>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28597
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55439
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

6-30595719-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595719
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595719
    reference: chr 6
allele count: 2
allele frequency: 1.723692148582263e-5
allele num: 116030
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+31T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+31T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+31T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+31T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+31T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+31T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+31T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+31T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+31T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+31T>C
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2365
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28597
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff

6-30595720-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595720
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595720
    reference: chr 6
allele count: 4
allele frequency: 3.447443720481263e-5
allele num: 116028
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+32A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+32A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+32A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+32A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+32A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+32A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+32A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+32A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+32A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+32A>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3792
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1162
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28597
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 402
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/6-30595721-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595721
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595721
    reference: chr 6
allele count: 1
allele frequency: 8.618163641691228e-6
allele num: 116034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+33C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+33C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+33C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+33C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+33C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+33C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+33C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+33C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+33C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+33C>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1163
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28596
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-30595722-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595722
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595722
    reference: chr 6
allele count: 1
allele frequency: 8.618015098762453e-6
allele num: 116036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+34C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+34C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+34C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+34C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+34C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+34C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+34C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+34C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+34C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+34C>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1449
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28596
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 417
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

6-30595726-GT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595726
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595725
    reference: chr 6
allele count: 2
allele frequency: 1.723811001361811e-5
allele num: 116022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+41delT
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+41delT
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+41delT
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+41delT
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+41delT
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+41delT
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+41delT
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+41delT
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+41delT
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+41delT
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3060
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28596
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3498
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: GT
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: DP

6-30595739-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595739
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595739
    reference: chr 6
allele count: 13
allele frequency: 1.120631691464235e-4
allele num: 116006
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.287+51A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.321+51A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.321+51A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.321+51A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.292+51A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.321+51A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.321+51A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.285+51A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.314+51A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.321+51A>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28596
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3061
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1447
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3793
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2664
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 933
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55443
  bin: 9.75e1
  variant carriers: 13
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

6-30595772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595772
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595772
    reference: chr 6
allele count: 8
allele frequency: 6.900954056898366e-5
allele num: 115926
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.322-37C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.293-37C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.322-37C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.322-37C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.288-37C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.322-37C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.315-37C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.322-37C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.286-37C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.322-37C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22755
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

6-30595773-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595773
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595773
    reference: chr 6
allele count: 3
allele frequency: 2.587902418826127e-5
allele num: 115924
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.322-36G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.293-36G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.315-36G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.322-36G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.322-36G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.288-36G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.322-36G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.322-36G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.286-36G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.322-36G>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6273
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3471
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

6-30595776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595776
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595776
    reference: chr 6
allele count: 1
allele frequency: 8.623068432671082e-6
allele num: 115968
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.322-33G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.322-33G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.322-33G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.315-33G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.293-33G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.286-33G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.322-33G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.322-33G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.288-33G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.322-33G>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14815
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25097
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2056
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7614
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum

6-30595776-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595776
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595776
    reference: chr 6
allele count: 2
allele frequency: 1.724613686534216e-5
allele num: 115968
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.322-33G>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.315-33G>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.286-33G>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.322-33G>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.293-33G>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.322-33G>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.322-33G>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.322-33G>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.322-33G>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.288-33G>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22828
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5444
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6258
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3287
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14815
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

6-30595784-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595784
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595784
    reference: chr 6
allele count: 83
allele frequency: 7.15529578096174e-4
allele num: 115998
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.322-25A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.293-25A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.322-25A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.288-25A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.286-25A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.322-25A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.315-25A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.322-25A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.322-25A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.322-25A>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5595
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22860
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 986
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 9.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14768
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7612
  bin: 9.75e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 4685
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3463
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

6-30595795-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595795
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595795
    reference: chr 6
allele count: 40
allele frequency: 3.446315027656678e-4
allele num: 116066
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.322-14T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.286-14T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.315-14T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.322-14T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.322-14T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.288-14T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.293-14T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.322-14T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.322-14T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.322-14T>C
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5776
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22919
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 14773
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6238
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2053
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

6-30595800-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595800
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595800
    reference: chr 6
allele count: 1
allele frequency: 8.613709580167795e-6
allele num: 116094
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.322-9C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.293-9C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.322-9C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.322-9C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.288-9C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.322-9C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.315-9C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.322-9C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.322-9C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.286-9C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1649
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9068
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7520
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

6-30595815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595815
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595815
    reference: chr 6
allele count: 3
allele frequency: 2.582511233923867e-5
allele num: 116166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.328C>T
  hgvsp: ENSP00000324222.7:p.Arg110Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.328C>T
  hgvsp: ENSP00000365666.4:p.Arg110Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.328C>T
  hgvsp: ENSP00000324459.5:p.Arg110Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.321C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.294C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.292C>T
  hgvsp: ENSP00000327832.5:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.328C>T
  hgvsp: ENSP00000332374.8:p.Arg110Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.328C>T
  hgvsp: ENSP00000365668.4:p.Arg110Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.328C>T
  hgvsp: ENSP00000365661.2:p.Arg110Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.299C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5970
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7519
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Arg98Cys
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

6-30595823-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595823
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595823
    reference: chr 6
allele count: 137
allele frequency: 1.179204682389396e-3
allele num: 116180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.307T>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.336T>A
  hgvsp: ENST00000376483.4:c.336T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.336T>A
  hgvsp: ENST00000376478.2:c.336T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.336T>A
  hgvsp: ENST00000318999.7:c.336T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.329T>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.336T>A
  hgvsp: ENST00000319027.5:c.336T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.302T>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.300T>A
  hgvsp: ENST00000330083.5:c.300T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.336T>A
  hgvsp: ENST00000376485.4:c.336T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.336T>A
  hgvsp: ENST00000329992.8:c.336T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14762
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 9.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6224
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3573
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala100Ala
num of homozygotes: 1
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP

6-30595824-CATA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595824
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595821
    reference: chr 6
allele count: 8
allele frequency: 6.885629690835227e-5
allele num: 116184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.311_313delAAT
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.340_342delAAT
  hgvsp: ENSP00000332374.8:p.Asn114del
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.340_342delAAT
  hgvsp: ENSP00000365666.4:p.Asn114del
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.340_342delAAT
  hgvsp: ENSP00000324222.7:p.Asn114del
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.340_342delAAT
  hgvsp: ENSP00000324459.5:p.Asn114del
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.304_306delAAT
  hgvsp: ENSP00000327832.5:p.Asn102del
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.340_342delAAT
  hgvsp: ENSP00000365668.4:p.Asn114del
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.333_335delAAT
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.306_308delAAT
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.340_342delAAT
  hgvsp: ENSP00000365661.2:p.Asn114del
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn102del
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
reference allele: CATA
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-30595835-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595835
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595835
    reference: chr 6
allele count: 1
allele frequency: 8.607037113544033e-6
allele num: 116184
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.348A>C
  hgvsp: ENST00000319027.5:c.348A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.348A>C
  hgvsp: ENST00000329992.8:c.348A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.348A>C
  hgvsp: ENST00000318999.7:c.348A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.314A>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.341A>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.348A>C
  hgvsp: ENST00000376483.4:c.348A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.312A>C
  hgvsp: ENST00000330083.5:c.312A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.348A>C
  hgvsp: ENST00000376485.4:c.348A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.319A>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.348A>C
  hgvsp: ENST00000376478.2:c.348A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val104Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ

6-30595845-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595845
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595844
    reference: chr 6
allele count: 1
allele frequency: 8.605851979345956e-6
allele num: 116200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.359delG
  hgvsp: ENSP00000365668.4:p.Cys120SerfsTer45
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.323delG
  hgvsp: ENSP00000327832.5:p.Cys108SerfsTer45
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.325delG
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.330delG
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.359delG
  hgvsp: ENSP00000324222.7:p.Cys120SerfsTer45
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.359delG
  hgvsp: ENSP00000332374.8:p.Cys120SerfsTer45
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.359delG
  hgvsp: ENSP00000365661.2:p.Cys120SerfsTer45
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.359delG
  hgvsp: ENSP00000365666.4:p.Cys120SerfsTer45
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.359delG
  hgvsp: ENSP00000324459.5:p.Cys120SerfsTer45
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.352delG
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6031
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23125
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 587
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Cys108SerfsTer45
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: TG
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

6-30595846-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595846
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595846
    reference: chr 6
allele count: 1
allele frequency: 8.605851979345956e-6
allele num: 116200
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.325G>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.359G>T
  hgvsp: ENSP00000324459.5:p.Cys120Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.359G>T
  hgvsp: ENSP00000365666.4:p.Cys120Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.359G>T
  hgvsp: ENSP00000324222.7:p.Cys120Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.352G>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.359G>T
  hgvsp: ENSP00000332374.8:p.Cys120Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.359G>T
  hgvsp: ENSP00000365661.2:p.Cys120Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.330G>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.323G>T
  hgvsp: ENSP00000327832.5:p.Cys108Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.359G>T
  hgvsp: ENSP00000365668.4:p.Cys120Phe
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23126
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6026
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14791
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 972
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3271
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys108Phe
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

6-30595862-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595862
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595862
    reference: chr 6
allele count: 1
allele frequency: 8.605111436193099e-6
allele num: 116210
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.375C>T
  hgvsp: ENST00000318999.7:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.375C>T
  hgvsp: ENST00000376483.4:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.339C>T
  hgvsp: ENST00000330083.5:c.339C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.375C>T
  hgvsp: ENST00000319027.5:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.375C>T
  hgvsp: ENST00000376478.2:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.368C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.375C>T
  hgvsp: ENST00000329992.8:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.346C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.341C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.375C>T
  hgvsp: ENST00000376485.4:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14788
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23130
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6035
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7409
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Tyr113Tyr
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/6-30595865-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595865
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595865
    reference: chr 6
allele count: 1
allele frequency: 8.605111436193099e-6
allele num: 116210
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.342C>A
  hgvsp: ENST00000330083.5:c.342C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.349C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.378C>A
  hgvsp: ENST00000376485.4:c.378C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.378C>A
  hgvsp: ENST00000329992.8:c.378C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.378C>A
  hgvsp: ENST00000376478.2:c.378C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.378C>A
  hgvsp: ENST00000318999.7:c.378C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.378C>A
  hgvsp: ENST00000376483.4:c.378C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.344C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.371C>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.378C>A
  hgvsp: ENST00000319027.5:c.378C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14790
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6245
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 971
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ile114Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

6-30595897-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595897
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595897
    reference: chr 6
allele count: 1
allele frequency: 8.610149644400819e-6
allele num: 116142
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.410G>A
  hgvsp: ENSP00000332374.8:p.Arg137Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.410G>A
  hgvsp: ENSP00000324222.7:p.Arg137Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.410G>A
  hgvsp: ENSP00000324459.5:p.Arg137Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.374G>A
  hgvsp: ENSP00000327832.5:p.Arg125Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.410G>A
  hgvsp: ENSP00000365668.4:p.Arg137Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.403G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.376G>A
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.410G>A
  hgvsp: ENSP00000365666.4:p.Arg137Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.410G>A
  hgvsp: ENSP00000365661.2:p.Arg137Gln
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.381G>A
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6236
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg125Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum

6-30595901-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595901
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595901
    reference: chr 6
allele count: 1
allele frequency: 8.611484275429714e-6
allele num: 116124
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.378A>G
  hgvsp: ENST00000330083.5:c.378A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.385A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.380A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.414A>G
  hgvsp: ENST00000376483.4:c.414A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.414A>G
  hgvsp: ENST00000319027.5:c.414A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.414A>G
  hgvsp: ENST00000329992.8:c.414A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.407A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.414A>G
  hgvsp: ENST00000376485.4:c.414A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.414A>G
  hgvsp: ENST00000318999.7:c.414A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.414A>G
  hgvsp: ENST00000376478.2:c.414A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14741
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6228
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu126Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: A
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

6-30595903-T-TTTTAGATGGAGTAAAGGGAGGACCTCTGTGGGGATGGTATATAAGGGAGGCCTGGGTCCTTCGGAGAGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595903
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595972
    reference: chr 6
allele count: 1
allele frequency: 8.613264427217915e-6
allele num: 116100
alternate allele: TTTTAGATGGAGTAAAGGGAGGACCTCTGTGGGGATGGTATATAAGGGAGGCCTGGGTCCTTCGGAGAGA
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: inframe_insertion
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: inframe insertion
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14735
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6227
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1646
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4669
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9041
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ

6-30595912-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595912
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595912
    reference: chr 6
allele count: 2
allele frequency: 1.723870433898188e-5
allele num: 116018
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.425A>G
  hgvsp: ENSP00000332374.8:p.Tyr142Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.396A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.425A>G
  hgvsp: ENSP00000365666.4:p.Tyr142Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.391A>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.425A>G
  hgvsp: ENSP00000365668.4:p.Tyr142Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.425A>G
  hgvsp: ENSP00000324459.5:p.Tyr142Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.425A>G
  hgvsp: ENSP00000324222.7:p.Tyr142Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.425A>G
  hgvsp: ENSP00000365661.2:p.Tyr142Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.389A>G
  hgvsp: ENSP00000327832.5:p.Tyr130Cys
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.418A>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22864
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7386
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Tyr130Cys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

6-30595912-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595912
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595912
    reference: chr 6
allele count: 1
allele frequency: 8.619352169490942e-6
allele num: 116018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.418A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.391A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.425A>T
  hgvsp: ENSP00000332374.8:p.Tyr142Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.425A>T
  hgvsp: ENSP00000365668.4:p.Tyr142Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.425A>T
  hgvsp: ENSP00000365666.4:p.Tyr142Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.425A>T
  hgvsp: ENSP00000324459.5:p.Tyr142Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.425A>T
  hgvsp: ENSP00000324222.7:p.Tyr142Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.396A>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.425A>T
  hgvsp: ENSP00000365661.2:p.Tyr142Phe
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.389A>T
  hgvsp: ENSP00000327832.5:p.Tyr130Phe
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22864
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14662
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr130Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

6-30595933-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595933
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595933
    reference: chr 6
allele count: 2
allele frequency: 1.730972287133683e-5
allele num: 115542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.435+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.435+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.435+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.428+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.435+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.435+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.435+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.401+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.406+11C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.399+11C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6060
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21449
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13829
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4489
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7353
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 1
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff

6-30595934-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595934
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595934
    reference: chr 6
allele count: 1
allele frequency: 8.660558086363084e-6
allele num: 115466
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.435+12C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.428+12C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.435+12C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.406+12C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.435+12C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.435+12C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.399+12C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.435+12C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.401+12C>G
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.435+12C>G
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1517
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13728
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6046
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3196
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-30595949-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595949
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595949
    reference: chr 6
allele count: 1
allele frequency: 8.696257130930847e-6
allele num: 114992
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.399+27T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.428+27T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.406+27T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.401+27T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.435+27T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.435+27T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.435+27T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.435+27T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.435+27T>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.435+27T>C
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 964
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11913
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1614
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3289
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5790
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1538
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD

6-30595962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595962
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595962
    reference: chr 6
allele count: 2
allele frequency: 1.753063478428554e-5
allele num: 114086
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.435+40C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.435+40C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.435+40C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.401+40C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.435+40C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.435+40C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.428+40C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.435+40C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.399+40C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.406+40C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3087
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7750
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13967
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2574
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1974
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

6-30595971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30595971
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30595971
    reference: chr 6
allele count: 1
allele frequency: 8.805762490974094e-6
allele num: 113562
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.401+49C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.435+49C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.435+49C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.435+49C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.406+49C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.399+49C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.428+49C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.435+49C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.435+49C>T
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.435+49C>T
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11119
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12493
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3543
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5495
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1603
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 740
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7510
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

6-30596055-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 30596055
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 30596055
    reference: chr 6
allele count: 1
allele frequency: 8.625746127039989e-6
allele num: 115932
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000327832
  ensembl transcript: ENST00000330083
  gene symbol: ATAT1
  hgvsc: ENST00000330083.5:c.400-51G>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365661
  ensembl transcript: ENST00000376478
  gene symbol: ATAT1
  hgvsc: ENST00000376478.2:c.436-51G>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365668
  ensembl transcript: ENST00000376485
  gene symbol: ATAT1
  hgvsc: ENST00000376485.4:c.436-51G>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000365666
  ensembl transcript: ENST00000376483
  gene symbol: ATAT1
  hgvsc: ENST00000376483.4:c.436-51G>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000332374
  ensembl transcript: ENST00000329992
  gene symbol: ATAT1
  hgvsc: ENST00000329992.8:c.436-51G>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000493388
  gene symbol: ATAT1
  hgvsc: ENST00000493388.1:n.407-51G>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324222
  ensembl transcript: ENST00000318999
  gene symbol: ATAT1
  hgvsc: ENST00000318999.7:c.436-51G>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000468713
  gene symbol: ATAT1
  hgvsc: ENST00000468713.1:n.429-51G>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl protein: ENSP00000324459
  ensembl transcript: ENST00000319027
  gene symbol: ATAT1
  hgvsc: ENST00000319027.5:c.436-51G>C
  variant of: http://identifiers.org/hgnc/21186
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000137343
  ensembl transcript: ENST00000471782
  gene symbol: ATAT1
  hgvsc: ENST00000471782.1:n.402-51G>C
  variant of: http://identifiers.org/hgnc/21186
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10322
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12486
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 800
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46056
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1757
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2426
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578183195505334e-5
allele num: 63364
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16256
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e0

FS
type: SiteQuality
SIO_000300: 1.598e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

QD
type: SiteQuality
SIO_000300: 3.004e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.685e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.004e0

DP
type: SiteQuality
SIO_000300: 3.330079e6

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.39e-1

GenotypeQuality
all individuals: 624
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1043
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1758
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2390
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46056
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578133383833602e-5
allele num: 63366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9172
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.466e-1

FS
type: SiteQuality
SIO_000300: 4.441e0

MQ
type: SiteQuality
SIO_000300: 5.942e1

MQRankSum
type: SiteQuality
SIO_000300: 1.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.14e-1

QD
type: SiteQuality
SIO_000300: 9.779999999999999e0

DP
type: SiteQuality
SIO_000300: 3.330122e6

GenotypeQuality
all individuals: 91
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2388
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1510
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46055
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63368
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.26797385620915e-4
allele num: 9180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.944e0

MQRankSum
type: SiteQuality
SIO_000300: -1.66e-1

FS
type: SiteQuality
SIO_000300: 4.55e-1

DP
type: SiteQuality
SIO_000300: 3.330456e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.243e0

MQ
type: SiteQuality
SIO_000300: 5.884e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 1.166e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 39
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1315
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 655
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46056
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1760
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 278
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1638
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173708920187793e-4
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63366
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9174
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.150818058801821e-5
allele num: 16258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.28e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e-1

DP
type: SiteQuality
SIO_000300: 3.330626e6

FS
type: SiteQuality
SIO_000300: 4.402e0

QD
type: SiteQuality
SIO_000300: 9.300000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 5.955e1

MQRankSum
type: SiteQuality
SIO_000300: 9.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -9.84e-1

GenotypeQuality
all individuals: 2120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2438
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1765
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1641
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.577834579822651e-5
allele num: 63378
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.49e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.559e0

QD
type: SiteQuality
SIO_000300: 1.298e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.346e0

VQSLOD
type: SiteQuality
SIO_000300: 8.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

FS
type: SiteQuality
SIO_000300: 7.29e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 3.331054e6

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2451
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1317
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1766
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2121
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1511
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63376
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.229861025704096e-4
allele num: 16262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9176
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.22e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

FS
type: SiteQuality
SIO_000300: 1.4568e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.26e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.320000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.095e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.8e-2

QD
type: SiteQuality
SIO_000300: 1.151e1

DP
type: SiteQuality
SIO_000300: 3.331249e6

GenotypeQuality
all individuals: 92
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 687
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1057
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele count: 1
allele frequency: 1.089799476896251e-4
allele num: 9176
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63366
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8520
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South Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -6.311e-1

QD
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InbreedingCoeff
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MQRankSum
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SIO_000300: 1.43e0

BaseQRankSum
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SIO_000300: -1.065e0

FS
type: SiteQuality
SIO_000300: 7.3e0

MQ
type: SiteQuality
SIO_000300: 5.587e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.94e-1

DP
type: SiteQuality
SIO_000300: 3.331462e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578183195505334e-5
allele num: 63364
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9168
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

FS
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SIO_000300: 4.92e-1

BaseQRankSum
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SIO_000300: -1.949e0

VQSLOD
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SIO_000300: 8.86e-1

DP
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SIO_000300: 3.331858e6

InbreedingCoeff
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SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.03e-1

MQ
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SIO_000300: 5.943e1

QD
type: SiteQuality
SIO_000300: 1.205e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.23e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.726003490401397e-5
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

DP
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SIO_000300: 3.331965e6

BaseQRankSum
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SIO_000300: -3.493e0

ClippingRankSum
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SIO_000300: -9.419999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.61e-1

QD
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SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 9.53e-1

InbreedingCoeff
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SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.959e1

VQSLOD
type: SiteQuality
SIO_000300: -3.569e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.148548942449582e-5
allele num: 16264
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.214e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.371e0

QD
type: SiteQuality
SIO_000300: 1.485e1

DP
type: SiteQuality
SIO_000300: 3.331728e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578282828282828e-5
allele num: 63360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9170
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.389999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

DP
type: SiteQuality
SIO_000300: 3.331769e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

QD
type: SiteQuality
SIO_000300: 1.344e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

MQ
type: SiteQuality
SIO_000300: 5.921e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 11
allele frequency: 1.199040767386091e-3
allele num: 9174
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.059001512859304e-3
allele num: 6610
num of homozygotes: 0

Other
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allele count: 6
allele frequency: 6.84931506849315e-3
allele num: 876
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South Asian
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allele count: 317
allele frequency: 1.949569495694957e-2
allele num: 16260
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European (Non-Finnish)
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allele count: 479
allele frequency: 7.560452048740451e-3
allele num: 63356
num of homozygotes: 6

East Asian
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allele count: 8
allele frequency: 9.391876027236441e-4
allele num: 8518
num of homozygotes: 0

Latino
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allele count: 55
allele frequency: 4.799301919720768e-3
allele num: 11460
num of homozygotes: 0

DP
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BaseQRankSum
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ClippingRankSum
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QD
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.21e-1

InbreedingCoeff
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SIO_000300: 1.51e-2

VQSLOD
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MQRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9174
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 1
allele frequency: 6.149305128520478e-5
allele num: 16262
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 63354
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East Asian
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Other
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InbreedingCoeff
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QD
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ReadPosRankSum
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BaseQRankSum
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VQSLOD
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MQ
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SIO_000300: 5.978e1

MQRankSum
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ClippingRankSum
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DP
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FS
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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European (Finnish)
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East Asian
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South Asian
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allele frequency: 6.150061500615006e-5
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African
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MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
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DP
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BaseQRankSum
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FS
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63354
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.149305128520478e-5
allele num: 16262
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9172
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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SIO_000300: 5.3e-3

VQSLOD
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MQ
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SIO_000300: 6.0e1

MQRankSum
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ClippingRankSum
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SIO_000300: -3.67e-1

QD
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SIO_000300: 1.494e1

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-2

DP
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BaseQRankSum
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63350
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9168
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.150061500615006e-5
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ClippingRankSum
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MQRankSum
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MQ
type: SiteQuality
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QD
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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SIO_000300: -5.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 6.149305128520478e-5
allele num: 16262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

FS
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.03e-1

BaseQRankSum
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DP
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MQRankSum
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ClippingRankSum
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QD
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VQSLOD
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InbreedingCoeff
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SIO_000300: 2.8e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.726003490401397e-5
allele num: 11460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63332
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
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allele count: 1
allele frequency: 1.09217999126256e-4
allele num: 9156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.22e-1

QD
type: SiteQuality
SIO_000300: 1.277e1

FS
type: SiteQuality
SIO_000300: 1.368e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

DP
type: SiteQuality
SIO_000300: 5.636081e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.745200698080279e-4
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 21
allele frequency: 3.316068721576554e-4
allele num: 63328
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.637312e6

VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.973e0

MQRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

InbreedingCoeff
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SIO_000300: 3.7e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.579080343607883e-5
allele num: 63328
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9148
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 6.148548942449582e-5
allele num: 16264
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MQ
type: SiteQuality
SIO_000300: 5.977e1

InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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FS
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DP
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8518
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.579080343607883e-5
allele num: 63328
num of homozygotes: 0

Other
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European (Finnish)
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ClippingRankSum
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ReadPosRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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DP
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FS
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8518
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.579130215077535e-5
allele num: 63326
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele num: 16264
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
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QD
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VQSLOD
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BaseQRankSum
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MQRankSum
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SIO_000300: 8.85e-1

MQ
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SIO_000300: 5.971e1

ClippingRankSum
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SIO_000300: -3.06e-1

DP
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SIO_000300: 5.636021e6

InbreedingCoeff
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SIO_000300: 5.0e-3

FS
type: SiteQuality
SIO_000300: 4.047e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 63324
num of homozygotes: 0

Latino
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East Asian
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allele frequency: 0.0e0
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South Asian
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Other
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QD
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VQSLOD
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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InbreedingCoeff
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FS
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MQ
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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African
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num of homozygotes: 0

South Asian
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allele num: 16264
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Latino
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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European (Finnish)
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European (Non-Finnish)
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East Asian
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ClippingRankSum
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MQ
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FS
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DP
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 8.726003490401397e-5
allele num: 11460
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African
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MQRankSum
type: SiteQuality
SIO_000300: 8.26e-1

InbreedingCoeff
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BaseQRankSum
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FS
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MQ
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VQSLOD
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ReadPosRankSum
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DP
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QD
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ClippingRankSum
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SIO_000300: -3.71e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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South Asian
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African
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allele frequency: 2.187226596675416e-4
allele num: 9144
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 3.158559696778269e-5
allele num: 63320
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BaseQRankSum
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DP
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ReadPosRankSum
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FS
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MQ
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QD
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Other
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African
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European (Non-Finnish)
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East Asian
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South Asian
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Latino
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MQ
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ClippingRankSum
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VQSLOD
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QD
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ReadPosRankSum
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DP
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FS
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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African
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Other
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Latino
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East Asian
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South Asian
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QD
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DP
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MQ
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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Other
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Latino
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European (Non-Finnish)
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East Asian
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FS
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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MQ
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BaseQRankSum
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DP
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InbreedingCoeff
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QD
type: SiteQuality
SIO_000300: 1.212e1

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55484
bin: 9.75e1
variant carriers: 1044

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 13
allele frequency: 1.490825688073395e-2
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 536
allele frequency: 8.471629524261103e-3
allele num: 63270
num of homozygotes: 4

Latino
type: Population
allele count: 135
allele frequency: 1.178010471204189e-2
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 29
allele frequency: 3.40455505987321e-3
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 296
allele frequency: 3.24846356453029e-2
allele num: 9112
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.02571860816944e-4
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 40
allele frequency: 2.459419576979833e-3
allele num: 16264
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.73e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -5.105e0

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

QD
type: SiteQuality
SIO_000300: 1.291e1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 2.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.24e-1

DP
type: SiteQuality
SIO_000300: 5.675814e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.79e-1

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55438
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63234
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.727526618956188e-5
allele num: 11458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9108
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 5.623897e6

MQ
type: SiteQuality
SIO_000300: 5.919e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

FS
type: SiteQuality
SIO_000300: 2.958e0

VQSLOD
type: SiteQuality
SIO_000300: 3.63e-1

QD
type: SiteQuality
SIO_000300: 1.172e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.985e0

GenotypeQuality
all individuals: 286
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 417
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55439
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 267
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.580977676595206e-5
allele num: 63252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.623515e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQ
type: SiteQuality
SIO_000300: 5.614e1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

FS
type: SiteQuality
SIO_000300: 4.415e0

MQRankSum
type: SiteQuality
SIO_000300: -2.089e0

QD
type: SiteQuality
SIO_000300: 1.731e1

GenotypeQuality
all individuals: 130
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55439
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 287
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.162755392497944e-5
allele num: 63236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.999999999999999e-3

DP
type: SiteQuality
SIO_000300: 5.622557e6

MQRankSum
type: SiteQuality
SIO_000300: 1.83e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.12e0

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.81e-1

FS
type: SiteQuality
SIO_000300: 6.28e-1

QD
type: SiteQuality
SIO_000300: 1.393e1

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 400
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55439
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581477732793522e-5
allele num: 63232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

FS
type: SiteQuality
SIO_000300: 6.53e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

QD
type: SiteQuality
SIO_000300: 1.347e1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

DP
type: SiteQuality
SIO_000300: 5.622943e6

GenotypeQuality
all individuals: 400
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55439
bin: 9.75e1
variant carriers: 15

GenotypeQuality
all individuals: 159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.760976755106833e-3
allele num: 8518
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.870000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e0

FS
type: SiteQuality
SIO_000300: 6.53e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.79e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

DP
type: SiteQuality
SIO_000300: 5.622943e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

GenotypeQuality
all individuals: 385
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 285
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.726003490401397e-5
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.745333755140778e-5
allele num: 63220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.406e1

VQSLOD
type: SiteQuality
SIO_000300: 7.42e-1

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.251e0

DP
type: SiteQuality
SIO_000300: 5.622255e6

MQRankSum
type: SiteQuality
SIO_000300: 2.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.03e-1

FS
type: SiteQuality
SIO_000300: 7.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55439
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 270
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.163756011136421e-5
allele num: 63216
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9090
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.304e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.97e0

MQRankSum
type: SiteQuality
SIO_000300: 3.78e-1

DP
type: SiteQuality
SIO_000300: 5.621841e6

QD
type: SiteQuality
SIO_000300: 3.099e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.3e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 6.133e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

GenotypeQuality
all individuals: 386
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55439
bin: 9.75e1
variant carriers: 4

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.327512022272843e-5
allele num: 63216
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.79e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.66e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.312e0

DP
type: SiteQuality
SIO_000300: 5.621881e6

QD
type: SiteQuality
SIO_000300: 1.385e1

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581727879535605e-5
allele num: 63222
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.552e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

DP
type: SiteQuality
SIO_000300: 5.621751e6

VQSLOD
type: SiteQuality
SIO_000300: -1.564e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

MQ
type: SiteQuality
SIO_000300: 5.964e1

MQRankSum
type: SiteQuality
SIO_000300: -5.31e-1

QD
type: SiteQuality
SIO_000300: 2.055e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.942e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.14e0

GenotypeQuality
all individuals: 285
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581677843856763e-5
allele num: 63224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.974e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.051e0

DP
type: SiteQuality
SIO_000300: 5.621687e6

MQRankSum
type: SiteQuality
SIO_000300: 1.57e0

QD
type: SiteQuality
SIO_000300: 1.571e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.47e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.244e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

VQSLOD
type: SiteQuality
SIO_000300: -6.560000000000001e-2

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 7.5e0
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9078
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.163555836760519e-5
allele num: 63220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.070000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

FS
type: SiteQuality
SIO_000300: 3.614e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
SIO_000300: 1.94e0

MQ
type: SiteQuality
SIO_000300: 6.04e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

QD
type: SiteQuality
SIO_000300: 1.406e1

DP
type: SiteQuality
SIO_000300: 5.62137e6

GenotypeQuality
all individuals: 93
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 419
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 271
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
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GenotypeQuality
all individuals: 201
bin: 2.5e0
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GenotypeQuality
all individuals: 253
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 1.423600126542234e-4
allele num: 63220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.490401396160559e-4
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9062
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.621166e6

MQRankSum
type: SiteQuality
SIO_000300: 7.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

FS
type: SiteQuality
SIO_000300: 6.53e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.05e-1

QD
type: SiteQuality
SIO_000300: 1.521e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
all individuals: 2064
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
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variant carriers: 0

GenotypeQuality
all individuals: 24888
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 136
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GenotypeQuality
all individuals: 3572
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 8

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63192
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.727526618956188e-5
allele num: 11458
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 8.22175240779892e-4
allele num: 8514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9024
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.96e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.33e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.58e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

DP
type: SiteQuality
SIO_000300: 1.885066e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
SIO_000300: 1.467e1

GenotypeQuality
all individuals: 171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1626
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24894
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 21
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GenotypeQuality
all individuals: 7620
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 61
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63202
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9014
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.618257985686857e-4
allele num: 11458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.884061e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

QD
type: SiteQuality
SIO_000300: 1.388e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.345e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.87e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.15e0

FS
type: SiteQuality
SIO_000300: 8.279999999999999e0

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3466
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581777918380259e-5
allele num: 63220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.338e1

DP
type: SiteQuality
SIO_000300: 1.883682e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.362e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 97
bin: 4.75e1
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GenotypeQuality
all individuals: 82
bin: 2.75e1
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GenotypeQuality
all individuals: 8
bin: 1.75e1
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GenotypeQuality
all individuals: 3466
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 2.25e1
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GenotypeQuality
all individuals: 161
bin: 3.25e1
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GenotypeQuality
all individuals: 9085
bin: 6.75e1
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GenotypeQuality
all individuals: 1624
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.163555836760519e-5
allele num: 63220
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.362e0

QD
type: SiteQuality
SIO_000300: 1.338e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-1

DP
type: SiteQuality
SIO_000300: 1.883682e6

MQRankSum
type: SiteQuality
SIO_000300: -4.8e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
all individuals: 97
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9064
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 410
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25363
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3562
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2055
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 13
allele frequency: 1.134380453752182e-3
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 40
allele frequency: 4.417936823503424e-3
allele num: 9054
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 29
allele frequency: 4.586575567786424e-4
allele num: 63228
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.08e0

DP
type: SiteQuality
SIO_000300: 1.883158e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.69e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.51e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

QD
type: SiteQuality
SIO_000300: 1.609e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.9e-3

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7552
bin: 9.75e1
variant carriers: 40

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4684
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
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GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1618
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variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3570
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.726003490401397e-5
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 39
allele frequency: 4.282890401932792e-3
allele num: 9106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63246
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16262
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.3e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.34e-1

QD
type: SiteQuality
SIO_000300: 1.471e1

DP
type: SiteQuality
SIO_000300: 1.880502e6

GenotypeQuality
all individuals: 4683
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3463
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variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25744
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variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.58102766798419e-5
allele num: 63250
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.209e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.63e-1

DP
type: SiteQuality
SIO_000300: 1.879625e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 8.72e-1

MQ
type: SiteQuality
SIO_000300: 5.947e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.048e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
SIO_000300: 1.378e1

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
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variant carriers: 0

GenotypeQuality
all individuals: 25957
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 458
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4682
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variant carriers: 0

GenotypeQuality
all individuals: 3461
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9072
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3574
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2052
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1613
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.740684554849721e-5
allele num: 63282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

MQ
type: SiteQuality
SIO_000300: 5.965e1

MQRankSum
type: SiteQuality
SIO_000300: -1.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.093e0

VQSLOD
type: SiteQuality
SIO_000300: -1.959e-1

FS
type: SiteQuality
SIO_000300: 6.881e0

QD
type: SiteQuality
SIO_000300: 1.531e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.264e0

DP
type: SiteQuality
SIO_000300: 1.88116e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.28e0

GenotypeQuality
all individuals: 1610
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
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variant carriers: 0

GenotypeQuality
all individuals: 2051
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variant carriers: 0

GenotypeQuality
all individuals: 37
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 4681
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variant carriers: 0

GenotypeQuality
all individuals: 3458
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 15
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 26031
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variant carriers: 0

GenotypeQuality
all individuals: 7528
bin: 9.75e1
variant carriers: 136

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 3.274394237066143e-4
allele num: 9162
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.396160558464223e-3
allele num: 11460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 79
allele frequency: 1.248104145601618e-3
allele num: 63296
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 1.149425287356322e-3
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 35
allele frequency: 4.108945761915943e-3
allele num: 8518
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.844564682734874e-4
allele num: 16264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.683e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.41e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.16e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

DP
type: SiteQuality
SIO_000300: 1.8846e6

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3465
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3585
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 1614
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
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variant carriers: 0

GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 4690
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variant carriers: 0

GenotypeQuality
all individuals: 36
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variant carriers: 0

GenotypeQuality
all individuals: 9090
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variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7422
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26080
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 6.980802792321117e-4
allele num: 11460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

FS
type: SiteQuality
SIO_000300: 1.134e0

MQRankSum
type: SiteQuality
SIO_000300: -4.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

QD
type: SiteQuality
SIO_000300: 1.659e1

DP
type: SiteQuality
SIO_000300: 1.876147e6

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

MQ
type: SiteQuality
SIO_000300: 5.716e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.19e-1

GenotypeQuality
all individuals: 4688
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 56
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GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 11
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 572
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GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3466
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variant carriers: 0

GenotypeQuality
all individuals: 3
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variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.579778830963665e-5
allele num: 63300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.875972e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.621e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 3.899e0

MQRankSum
type: SiteQuality
SIO_000300: 2.92e0

QD
type: SiteQuality
SIO_000300: 1.125e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.071e0

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 2054
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4691
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variant carriers: 0

GenotypeQuality
all individuals: 26134
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variant carriers: 0

GenotypeQuality
all individuals: 5
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GenotypeQuality
all individuals: 3466
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GenotypeQuality
all individuals: 3586
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variant carriers: 0

GenotypeQuality
all individuals: 5
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variant carriers: 0

GenotypeQuality
all individuals: 62
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.726003490401397e-5
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63312
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.9e-1

InbreedingCoeff
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SIO_000300: -5.0e-4

MQRankSum
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SIO_000300: -1.595e0

MQ
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SIO_000300: 5.97e1

FS
type: SiteQuality
SIO_000300: 3.145e0

VQSLOD
type: SiteQuality
SIO_000300: 1.55e0

DP
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SIO_000300: 1.876264e6

ClippingRankSum
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SIO_000300: -1.451e0

ReadPosRankSum
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SIO_000300: 1.36e0

QD
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SIO_000300: 1.639e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.148548942449582e-5
allele num: 16264
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63314
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -1.593e0

DP
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ReadPosRankSum
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SIO_000300: -1.025e0

FS
type: SiteQuality
SIO_000300: 5.833e0

MQRankSum
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SIO_000300: 7.8e-1

MQ
type: SiteQuality
SIO_000300: 5.953e1

VQSLOD
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ClippingRankSum
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SIO_000300: -1.42e-1

InbreedingCoeff
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SIO_000300: -2.0e-4

QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.579229967467863e-5
allele num: 63322
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.132e0

ReadPosRankSum
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DP
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FS
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InbreedingCoeff
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SIO_000300: -2.0e-4

VQSLOD
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BaseQRankSum
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SIO_000300: -1.718e0

MQ
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SIO_000300: 5.885e1

ClippingRankSum
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SIO_000300: -1.009e0

QD
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SIO_000300: 1.215e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63322
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.148548942449582e-5
allele num: 16264
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

QD
type: SiteQuality
SIO_000300: 1.296e1

VQSLOD
type: SiteQuality
SIO_000300: -2.275e-1

ClippingRankSum
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SIO_000300: -1.434e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.586e0

FS
type: SiteQuality
SIO_000300: 8.414999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 9.73e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

DP
type: SiteQuality
SIO_000300: 1.876168e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.51285930408472e-4
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63282
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9160
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.21e-1

DP
type: SiteQuality
SIO_000300: 1.873852e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 3.85e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

BaseQRankSum
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SIO_000300: -2.991e0

FS
type: SiteQuality
SIO_000300: 5.191e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.46e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.58052789631737e-5
allele num: 63270
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9160
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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FS
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.580727767063956e-5
allele num: 63262
num of homozygotes: 0

European (Finnish)
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Other
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num of homozygotes: 0

African
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DP
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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FS
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VQSLOD
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MQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.092657342657343e-4
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Latino
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.581727879535605e-5
allele num: 63222
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Other
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South Asian
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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FS
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.167509559639817e-5
allele num: 16214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.01e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

QD
type: SiteQuality
SIO_000300: 1.536e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.14e-1

FS
type: SiteQuality
SIO_000300: 7.353e0

MQRankSum
type: SiteQuality
SIO_000300: -2.18e-1

DP
type: SiteQuality
SIO_000300: 1.86816e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

GenotypeQuality
all individuals: 605
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23869
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.752541184717841e-4
allele num: 11412
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9132
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.31e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.732e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.7e-1

QD
type: SiteQuality
SIO_000300: 3.398e1

DP
type: SiteQuality
SIO_000300: 1.829308e6

VQSLOD
type: SiteQuality
SIO_000300: -6.261e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

GenotypeQuality
all individuals: 662
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 2023
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7352
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62986
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.222775357809582e-5
allele num: 16070
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9130
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.41e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.085e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.488e0

DP
type: SiteQuality
SIO_000300: 1.825148e6

VQSLOD
type: SiteQuality
SIO_000300: -2.079e0

QD
type: SiteQuality
SIO_000300: 2.51e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeQuality
all individuals: 581
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7317
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1556
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4253
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62680
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16042
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9110
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.795074758135444e-5
allele num: 11370
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

DP
type: SiteQuality
SIO_000300: 1.754049e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.38e0

QD
type: SiteQuality
SIO_000300: 2.637e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.68e0

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.541e0

GenotypeQuality
all individuals: 1681
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12829
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1570
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2914
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 7304
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1988
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15916
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.215227316571281e-5
allele num: 62204
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

DP
type: SiteQuality
SIO_000300: 1.680316e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.7e-2

FS
type: SiteQuality
SIO_000300: 2.317e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.289e0

VQSLOD
type: SiteQuality
SIO_000300: 7.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

QD
type: SiteQuality
SIO_000300: 1.459e1

GenotypeQuality
all individuals: 1929
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2678
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 7.5e0
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GenotypeQuality
all individuals: 3615
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1600
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3208
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1993
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GenotypeQuality
all individuals: 6114
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2791
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11612
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4010
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7292
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2871
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9056
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6149349181228e-5
allele num: 61922
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15828
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.308e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.15e-1

DP
type: SiteQuality
SIO_000300: 1.662385e6

QD
type: SiteQuality
SIO_000300: 1.176e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.639999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.911e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.78e-1