10-3189461-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189461
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189461
    reference: chr 10
allele count: 1
allele frequency: 8.319052293562717e-6
allele num: 120206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3283G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-19C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2470G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-19C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-19C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-19C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3283G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-19C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-19C>T
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8462
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14732
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7094
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12520
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2915
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14015
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19571
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4639
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

10-3189463-TCA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189463
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189461
    reference: chr 10
allele count: 1
allele frequency: 8.318360284820657e-6
allele num: 120216
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-23_2236-22delTG
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-23_910-22delTG
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2473_2474delCA
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-23_1829-22delTG
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3286_269+3287delCA
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-23_1942-22delTG
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-23_2239-22delTG
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-23_236-22delTG
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3286_386+3287delCA
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7061
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2910
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8414
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12356
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14562
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1793
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3704
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: TCA
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum

10-3189464-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189464
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189464
    reference: chr 10
allele count: 12
allele frequency: 9.990675369654989e-5
allele num: 120112
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-22G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-22G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-22G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-22G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-22G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2473C>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3286C>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-22G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3286C>G
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11958
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14008
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

10-3189464-CAGAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189464
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189460
    reference: chr 10
allele count: 3
allele frequency: 2.497668842413747e-5
allele num: 120112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-26_1942-23delCTCT
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3291_386+3294delAGAG
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2478_2481delAGAG
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-26_910-23delCTCT
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-26_2236-23delCTCT
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3291_269+3294delAGAG
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-26_236-23delCTCT
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-26_2239-23delCTCT
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-26_1829-23delCTCT
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11958
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8193
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4356
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1735
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13965
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 859
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2610
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: CAGAG
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

10-3189470-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189470
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189470
    reference: chr 10
allele count: 1
allele frequency: 8.32639467110741e-6
allele num: 120100
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3292G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-28C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-28C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-28C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-28C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2479G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-28C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-28C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3292G>A
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13826
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11536
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18240
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 423
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1111
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ReadPosRankSum

10-3189473-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189473
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189473
    reference: chr 10
allele count: 3
allele frequency: 2.499083669321249e-5
allele num: 120044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-31C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-31C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2482G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-31C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3295G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-31C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-31C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3295G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-31C>T
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13505
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6816
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11285
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2986
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1382
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1828
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

10-3189474-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189474
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189474
    reference: chr 10
allele count: 4
allele frequency: 3.334166875052096e-5
allele num: 119970
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2483C>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-32G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-32G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-32G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3296C>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-32G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-32G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-32G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3296C>G
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11105
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1966
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13251
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8461
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3615
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

10-3189478-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189478
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189478
    reference: chr 10
allele count: 1
allele frequency: 8.339588024351597e-6
allele num: 119910
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-36C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-36C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-36C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-36C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2487G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3300G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-36C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-36C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3300G>A
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4309
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8739
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2901
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4298
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15885
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2604
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

10-3189479-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189479
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189479
    reference: chr 10
allele count: 1
allele frequency: 8.341814177747376e-6
allele num: 119878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-37C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-37C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2488G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-37C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3301G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-37C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-37C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3301G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-37C>T
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8749
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10565
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2898
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3017
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16058
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

10-3189486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189486
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189486
    reference: chr 10
allele count: 28
allele frequency: 2.343096234309624e-4
allele num: 119500
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-44G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-44G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2495C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-44G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-44G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-44G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3308C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3308C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-44G>A
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9856
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4276
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11001
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1503
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10662
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6628
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4233
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2410
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13997
  bin: 9.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

10-3189489-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189489
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189489
    reference: chr 10
allele count: 2
allele frequency: 1.673556139440698e-5
allele num: 119506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-47T>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-47T>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2498A>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-47T>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3311A>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-47T>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-47T>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3311A>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-47T>A
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10960
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11128
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9473
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1806
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 616
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2598
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2915
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-3189491-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189491
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189491
    reference: chr 10
allele count: 12
allele frequency: 1.005496715377396e-4
allele num: 119344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-49G>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-49G>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-49G>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-49G>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3313C>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2500C>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-49G>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-49G>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3313C>A
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6560
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9436
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11073
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10607
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13998
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

10-3189492-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189492
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189492
    reference: chr 10
allele count: 1
allele frequency: 8.402090440101497e-6
allele num: 119018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2236-50G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1829-50G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1942-50G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.236-50G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3314C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3314C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2239-50G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.910-50G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2501C>T
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6547
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4672
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10986
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9459
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1788
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11176
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1502
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9724
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1392
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2271
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2850
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

10-3189720-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189720
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189720
    reference: chr 10
allele count: 1
allele frequency: 8.332638946754437e-6
allele num: 120010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+44A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+44A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+44A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2729T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3542T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+44A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+44A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3542T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+44A>G
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2591
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36974
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-3189721-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189721
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189721
    reference: chr 10
allele count: 9
allele frequency: 7.499000133315558e-5
allele num: 120016
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+43C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+43C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2730G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+43C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3543G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+43C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3543G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+43C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+43C>T
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3586
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8550
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

10-3189725-CTAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189725
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189722
    reference: chr 10
allele count: 144
allele frequency: 1.199560161274199e-3
allele num: 120044
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3548_386+3550delTAA
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+36_2235+38delTTA
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+36_2238+38delTTA
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3548_269+3550delTAA
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2735_2737delTAA
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+36_1941+38delTTA
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+36_909+38delTTA
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+36_235+38delTTA
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+36_1828+38delTTA
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28504
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14008
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 8655
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 9.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3957
  bin: 9.75e1
  variant carriers: 143
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: CTAA
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum

10-3189731-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189731
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189731
    reference: chr 10
allele count: 33
allele frequency: 2.748717265276204e-4
allele num: 120056
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+33G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+33G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3553C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2740C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+33G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+33G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+33G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+33G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3553C>T
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8785
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 9.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1696
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2589
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: BaseQRankSum

10-3189732-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189732
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189732
    reference: chr 10
allele count: 42
allele frequency: 3.497143999067428e-4
allele num: 120098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+32C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+32C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+32C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3554G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2741G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+32C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+32C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3554G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+32C>T
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28666
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 9.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2842
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

10-3189733-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189733
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189733
    reference: chr 10
allele count: 1
allele frequency: 8.325562808045825e-6
allele num: 120112
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+31C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2742G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+31C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+31C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3555G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+31C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+31C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3555G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+31C>G
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28703
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3598
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2847
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum

10-3189735-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189735
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189735
    reference: chr 10
allele count: 1
allele frequency: 8.323761008173934e-6
allele num: 120138
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2744G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+29C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+29C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+29C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+29C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3557G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3557G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+29C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+29C>G
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3600
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ

10-3189736-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189736
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189736
    reference: chr 10
allele count: 7
allele frequency: 5.825953791863639e-5
allele num: 120152
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+28A>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+28A>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+28A>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2745T>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+28A>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+28A>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3558T>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+28A>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3558T>A
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28724
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8930
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14047
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9297
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37718
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3763
  bin: 9.75e1
  variant carriers: 7
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum

10-3189739-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189739
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189739
    reference: chr 10
allele count: 10
allele frequency: 8.319190709127816e-5
allele num: 120204
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+25A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+25A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+25A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+25A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3561T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2748T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+25A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3561T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+25A>G
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28746
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9015
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3601
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

10-3189746-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189746
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189746
    reference: chr 10
allele count: 50
allele frequency: 4.154204054503157e-4
allele num: 120360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+18A>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+18A>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+18A>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2755T>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3568T>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3568T>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+18A>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+18A>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+18A>T
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28787
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 9.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 14056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 890
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

10-3189747-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189747
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189747
    reference: chr 10
allele count: 1
allele frequency: 8.307303781484682e-6
allele num: 120376
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2756C>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+17G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+17G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3569C>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3569C>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+17G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+17G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+17G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+17G>C
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28808
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3704
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

10-3189761-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189761
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189761
    reference: chr 10
allele count: 2
allele frequency: 1.65977858553669e-5
allele num: 120498
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+3G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+3G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3583C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+3G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2770C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+3G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+3G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+3G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3583C>T
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9269
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28869
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
hgvs: c.2238+3G>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/10-3189763-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189763
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189763
    reference: chr 10
allele count: 1
allele frequency: 8.297515723792297e-6
allele num: 120518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+1G>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+1G>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+1G>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3585C>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+1G>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2772C>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3585C>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+1G>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+1G>T
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28887
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9320
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
hgvs: c.2238+1G>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

10-3189763-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189763
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189763
    reference: chr 10
allele count: 2
allele frequency: 1.659503144758459e-5
allele num: 120518
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1828+1G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1941+1G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2235+1G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3585C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2238+1G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.235+1G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.909+1G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2772C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3585C>T
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9263
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28887
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14085
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3704
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2596
  bin: 7.25e1
  variant carriers: 0
hgvs: c.2238+1G>A
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP

10-3189765-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189765
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189765
    reference: chr 10
allele count: 3
allele frequency: 2.489089491064169e-5
allele num: 120526
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.908A>C
  hgvsp: ENSP00000370382.1:p.Gln303Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2237A>C
  hgvsp: ENSP00000370377.2:p.Gln746Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2774T>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1940A>C
  hgvsp: ENSP00000401201.2:p.Gln647Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1827A>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3587T>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.234A>C
  hgvsp: ENSP00000413687.1:p.Gln79Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3587T>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2234A>C
  hgvsp: ENSP00000224949.4:p.Gln745Pro
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28893
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1699
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9323
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln746Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-3189766-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189766
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189766
    reference: chr 10
allele count: 11
allele frequency: 9.126812916929408e-5
allele num: 120524
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3588G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2233C>G
  hgvsp: ENSP00000224949.4:p.Gln745Glu
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.233C>G
  hgvsp: ENSP00000413687.1:p.Gln79Glu
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1939C>G
  hgvsp: ENSP00000401201.2:p.Gln647Glu
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3588G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.907C>G
  hgvsp: ENSP00000370382.1:p.Gln303Glu
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2775G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1826C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2236C>G
  hgvsp: ENSP00000370377.2:p.Gln746Glu
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28898
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9267
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2598
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gln746Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: DP

10-3189776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189776
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189776
    reference: chr 10
allele count: 107
allele frequency: 8.874218322358054e-4
allele num: 120574
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1816C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.897C>T
  hgvsp: ENST00000380994.1:c.897C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2226C>T
  hgvsp: ENST00000380989.2:c.2226C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2223C>T
  hgvsp: ENST00000224949.4:c.2223C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2785G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.223C>T
  hgvsp: ENST00000451454.1:c.223C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3598G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1929C>T
  hgvsp: ENST00000451104.2:c.1929C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3598G>A
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 14097
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28956
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3603
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 9.75e1
  variant carriers: 86
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38295
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Ser742Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-3189778-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189778
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189778
    reference: chr 10
allele count: 2
allele frequency: 1.658649859014762e-5
allele num: 120580
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2787T>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1814A>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.221A>T
  hgvsp: ENSP00000413687.1:p.Ser75Cys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3600T>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1927A>T
  hgvsp: ENSP00000401201.2:p.Ser643Cys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2224A>T
  hgvsp: ENSP00000370377.2:p.Ser742Cys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3600T>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.895A>T
  hgvsp: ENSP00000370382.1:p.Ser299Cys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2221A>T
  hgvsp: ENSP00000224949.4:p.Ser741Cys
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9258
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 672
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser742Cys
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

10-3189797-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189797
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189797
    reference: chr 10
allele count: 5
allele frequency: 4.146143257541834e-5
allele num: 120594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1908G>A
  hgvsp: ENST00000451104.2:c.1908G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2205G>A
  hgvsp: ENST00000380989.2:c.2205G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2806C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.202G>A
  hgvsp: ENST00000451454.1:c.202G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.876G>A
  hgvsp: ENST00000380994.1:c.876G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3619C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1795G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3619C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2202G>A
  hgvsp: ENST00000224949.4:c.2202G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14114
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29068
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3598
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly735Gly
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-3189798-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189798
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189798
    reference: chr 10
allele count: 2
allele frequency: 1.658484808279156e-5
allele num: 120592
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3620C>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2204G>T
  hgvsp: ENSP00000370377.2:p.Gly735Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.875G>T
  hgvsp: ENSP00000370382.1:p.Gly292Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1907G>T
  hgvsp: ENSP00000401201.2:p.Gly636Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2201G>T
  hgvsp: ENSP00000224949.4:p.Gly734Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1794G>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.201G>T
  hgvsp: ENSP00000413687.1:p.Gly68Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3620C>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2807C>A
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 671
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly735Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP

10-3189802-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189802
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189802
    reference: chr 10
allele count: 36
allele frequency: 2.985272654902481e-4
allele num: 120592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2197G>A
  hgvsp: ENSP00000224949.4:p.Ala733Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.197G>A
  hgvsp: ENSP00000413687.1:p.Ala67Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3624C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2811C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2200G>A
  hgvsp: ENSP00000370377.2:p.Ala734Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1903G>A
  hgvsp: ENSP00000401201.2:p.Ala635Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1790G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.871G>A
  hgvsp: ENSP00000370382.1:p.Ala291Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3624C>T
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29094
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14111
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38400
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2857
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala734Thr
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

10-3189803-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189803
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189803
    reference: chr 10
allele count: 54
allele frequency: 4.477463434048622e-4
allele num: 120604
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1902C>T
  hgvsp: ENST00000451104.2:c.1902C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3625G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2199C>T
  hgvsp: ENST00000380989.2:c.2199C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.196C>T
  hgvsp: ENST00000451454.1:c.196C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.870C>T
  hgvsp: ENST00000380994.1:c.870C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1789C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2196C>T
  hgvsp: ENST00000224949.4:c.2196C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2812G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3625G>A
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2602
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38491
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro733Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

10-3189806-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189806
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189806
    reference: chr 10
allele count: 6
allele frequency: 4.974134500596896e-5
allele num: 120624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3628C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.193G>A
  hgvsp: ENST00000451454.1:c.193G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2815C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1899G>A
  hgvsp: ENST00000451104.2:c.1899G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3628C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1786G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2196G>A
  hgvsp: ENST00000380989.2:c.2196G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.867G>A
  hgvsp: ENST00000380994.1:c.867G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2193G>A
  hgvsp: ENST00000224949.4:c.2193G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29180
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3611
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14138
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr732Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum

10-3189807-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189807
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189807
    reference: chr 10
allele count: 105
allele frequency: 8.704013793789479e-4
allele num: 120634
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.866C>T
  hgvsp: ENSP00000370382.1:p.Thr289Met
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3629G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1898C>T
  hgvsp: ENSP00000401201.2:p.Thr633Met
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.192C>T
  hgvsp: ENSP00000413687.1:p.Thr65Met
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2195C>T
  hgvsp: ENSP00000370377.2:p.Thr732Met
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2816G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3629G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1785C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2192C>T
  hgvsp: ENSP00000224949.4:p.Thr731Met
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3609
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14140
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29185
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9260
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 9.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr732Met
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

10-3189816-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189816
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189816
    reference: chr 10
allele count: 27
allele frequency: 2.237915257608912e-4
allele num: 120648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1776G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1889G>A
  hgvsp: ENSP00000401201.2:p.Arg630Gln
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.183G>A
  hgvsp: ENSP00000413687.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.857G>A
  hgvsp: ENSP00000370382.1:p.Arg286Gln
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2183G>A
  hgvsp: ENSP00000224949.4:p.Arg728Gln
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2186G>A
  hgvsp: ENSP00000370377.2:p.Arg729Gln
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2825C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3638C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3638C>T
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 895
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg729Gln
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

10-3189817-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189817
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189817
    reference: chr 10
allele count: 9
allele frequency: 7.459717525363039e-5
allele num: 120648
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2826G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1888C>T
  hgvsp: ENSP00000401201.2:p.Arg630Trp
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2182C>T
  hgvsp: ENSP00000224949.4:p.Arg728Trp
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1775C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2185C>T
  hgvsp: ENSP00000370377.2:p.Arg729Trp
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3639G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.182C>T
  hgvsp: ENSP00000413687.1:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.856C>T
  hgvsp: ENSP00000370382.1:p.Arg286Trp
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3639G>A
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9293
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3614
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg729Trp
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

10-3189827-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189827
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189827
    reference: chr 10
allele count: 1
allele frequency: 8.288849839196314e-6
allele num: 120644
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1878C>G
  hgvsp: ENSP00000401201.2:p.Ile626Met
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2172C>G
  hgvsp: ENSP00000224949.4:p.Ile724Met
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.172C>G
  hgvsp: ENSP00000413687.1:p.Ile58Met
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1765C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3649G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.846C>G
  hgvsp: ENSP00000370382.1:p.Ile282Met
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2175C>G
  hgvsp: ENSP00000370377.2:p.Ile725Met
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3649G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2836G>C
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3607
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14156
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile725Met
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

10-3189833-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189833
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189833
    reference: chr 10
allele count: 1
allele frequency: 8.290774026663129e-6
allele num: 120616
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2169A>G
  hgvsp: ENST00000380989.2:c.2169A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.840A>G
  hgvsp: ENST00000380994.1:c.840A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1872A>G
  hgvsp: ENST00000451104.2:c.1872A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3655T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.166A>G
  hgvsp: ENST00000451454.1:c.166A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2166A>G
  hgvsp: ENST00000224949.4:c.2166A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3655T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1759A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2842T>C
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14146
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29216
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1691
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala723Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

10-3189835-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189835
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189835
    reference: chr 10
allele count: 2
allele frequency: 1.658209796703479e-5
allele num: 120612
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1757G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.164G>A
  hgvsp: ENSP00000413687.1:p.Ala56Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.838G>A
  hgvsp: ENSP00000370382.1:p.Ala280Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3657C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2167G>A
  hgvsp: ENSP00000370377.2:p.Ala723Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2844C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2164G>A
  hgvsp: ENSP00000224949.4:p.Ala722Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1870G>A
  hgvsp: ENSP00000401201.2:p.Ala624Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3657C>T
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9289
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1420
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2593
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala723Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

10-3189836-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189836
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189836
    reference: chr 10
allele count: 13
allele frequency: 1.07781849536538e-4
allele num: 120614
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1756C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2166C>T
  hgvsp: ENST00000380989.2:c.2166C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.163C>T
  hgvsp: ENST00000451454.1:c.163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1869C>T
  hgvsp: ENST00000451104.2:c.1869C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2163C>T
  hgvsp: ENST00000224949.4:c.2163C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.837C>T
  hgvsp: ENST00000380994.1:c.837C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3658G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2845G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3658G>A
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29225
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14139
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9304
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr722Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: DP

10-3189837-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189837
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189837
    reference: chr 10
allele count: 1
allele frequency: 8.291461452995706e-6
allele num: 120606
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2846T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1755A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3659T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1868A>G
  hgvsp: ENSP00000401201.2:p.Tyr623Cys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.836A>G
  hgvsp: ENSP00000370382.1:p.Tyr279Cys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.162A>G
  hgvsp: ENSP00000413687.1:p.Tyr55Cys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2162A>G
  hgvsp: ENSP00000224949.4:p.Tyr721Cys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2165A>G
  hgvsp: ENSP00000370377.2:p.Tyr722Cys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3659T>C
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14132
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9317
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Tyr722Cys
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

10-3189841-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189841
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189841
    reference: chr 10
allele count: 2
allele frequency: 1.658704883227176e-5
allele num: 120576
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2158C>T
  hgvsp: ENST00000224949.4:c.2158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1864C>T
  hgvsp: ENST00000451104.2:c.1864C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.158C>T
  hgvsp: ENST00000451454.1:c.158C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.832C>T
  hgvsp: ENST00000380994.1:c.832C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3663G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3663G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2850G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2161C>T
  hgvsp: ENST00000380989.2:c.2161C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1751C>T
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29214
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9294
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2588
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu721Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

10-3189856-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189856
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189856
    reference: chr 10
allele count: 8
allele frequency: 6.646284726837697e-5
allele num: 120368
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1849C>A
  hgvsp: ENSP00000401201.2:p.Pro617Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1736C>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3678G>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2146C>A
  hgvsp: ENSP00000370377.2:p.Pro716Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3678G>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.143C>A
  hgvsp: ENSP00000413687.1:p.Pro49Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.817C>A
  hgvsp: ENSP00000370382.1:p.Pro273Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2143C>A
  hgvsp: ENSP00000224949.4:p.Pro715Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2865G>T
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29088
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9163
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3596
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro716Thr
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

10-3189857-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189857
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189857
    reference: chr 10
allele count: 1
allele frequency: 8.307717869901138e-6
allele num: 120370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3679A>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1848T>A
  hgvsp: ENST00000451104.2:c.1848T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.816T>A
  hgvsp: ENST00000380994.1:c.816T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1735T>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.142T>A
  hgvsp: ENST00000451454.1:c.142T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2866A>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3679A>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2145T>A
  hgvsp: ENST00000380989.2:c.2145T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2142T>A
  hgvsp: ENST00000224949.4:c.2142T>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14086
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3594
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29103
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9171
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ile715Ile
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: DP

10-3189859-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189859
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189859
    reference: chr 10
allele count: 1
allele frequency: 8.31282835672009e-6
allele num: 120296
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2868T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1846A>G
  hgvsp: ENSP00000401201.2:p.Ile616Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3681T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.140A>G
  hgvsp: ENSP00000413687.1:p.Ile48Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1733A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.814A>G
  hgvsp: ENSP00000370382.1:p.Ile272Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2143A>G
  hgvsp: ENSP00000370377.2:p.Ile715Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3681T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2140A>G
  hgvsp: ENSP00000224949.4:p.Ile714Val
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29050
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9132
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3595
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14077
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1674
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile715Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

10-3189864-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189864
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189864
    reference: chr 10
allele count: 1
allele frequency: 8.323206765102459e-6
allele num: 120146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2135A>G
  hgvsp: ENSP00000224949.4:p.Asn712Ser
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1841A>G
  hgvsp: ENSP00000401201.2:p.Asn614Ser
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.135A>G
  hgvsp: ENSP00000413687.1:p.Asn46Ser
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1728A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2138A>G
  hgvsp: ENSP00000370377.2:p.Asn713Ser
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.809A>G
  hgvsp: ENSP00000370382.1:p.Asn270Ser
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3686T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3686T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2873T>C
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14046
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28912
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 526
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2807
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asn713Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

10-3189865-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189865
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189865
    reference: chr 10
allele count: 1
allele frequency: 8.325701440346349e-6
allele num: 120110
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2137A>C
  hgvsp: ENSP00000370377.2:p.Asn713His
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.134A>C
  hgvsp: ENSP00000413687.1:p.Asn46His
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2874T>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3687T>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1840A>C
  hgvsp: ENSP00000401201.2:p.Asn614His
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1727A>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3687T>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2134A>C
  hgvsp: ENSP00000224949.4:p.Asn712His
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.808A>C
  hgvsp: ENSP00000370382.1:p.Asn270His
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3590
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14036
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9090
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2806
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn713His
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

10-3189867-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189867
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189867
    reference: chr 10
allele count: 1
allele frequency: 8.332777814812346e-6
allele num: 120008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3689G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2876G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1838C>T
  hgvsp: ENSP00000401201.2:p.Ala613Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2132C>T
  hgvsp: ENSP00000224949.4:p.Ala711Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.132C>T
  hgvsp: ENSP00000413687.1:p.Ala45Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2135C>T
  hgvsp: ENSP00000370377.2:p.Ala712Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.806C>T
  hgvsp: ENSP00000370382.1:p.Ala269Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1725C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3689G>A
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14006
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37962
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala712Val
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

10-3189868-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189868
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189868
    reference: chr 10
allele count: 1
allele frequency: 8.335695113615524e-6
allele num: 119966
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3690C>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2877C>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1837G>C
  hgvsp: ENSP00000401201.2:p.Ala613Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2134G>C
  hgvsp: ENSP00000370377.2:p.Ala712Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1724G>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.805G>C
  hgvsp: ENSP00000370382.1:p.Ala269Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2131G>C
  hgvsp: ENSP00000224949.4:p.Ala711Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3690C>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.131G>C
  hgvsp: ENSP00000413687.1:p.Ala45Pro
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9147
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 654
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ala712Pro
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD

10-3189868-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189868
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189868
    reference: chr 10
allele count: 1
allele frequency: 8.335695113615524e-6
allele num: 119966
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.805G>A
  hgvsp: ENSP00000370382.1:p.Ala269Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1724G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2134G>A
  hgvsp: ENSP00000370377.2:p.Ala712Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2131G>A
  hgvsp: ENSP00000224949.4:p.Ala711Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.131G>A
  hgvsp: ENSP00000413687.1:p.Ala45Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3690C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1837G>A
  hgvsp: ENSP00000401201.2:p.Ala613Thr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2877C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3690C>T
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3593
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1413
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2785
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala712Thr
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

10-3189869-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189869
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189869
    reference: chr 10
allele count: 2
allele frequency: 1.66814019050161e-5
allele num: 119894
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2130C>T
  hgvsp: ENST00000224949.4:c.2130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3691G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1836C>T
  hgvsp: ENST00000451104.2:c.1836C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.804C>T
  hgvsp: ENST00000380994.1:c.804C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.130C>T
  hgvsp: ENST00000451454.1:c.130C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2133C>T
  hgvsp: ENST00000380989.2:c.2133C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2878G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3691G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1723C>T
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9074
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28694
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13961
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2788
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9133
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu711Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

10-3189876-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189876
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189876
    reference: chr 10
allele count: 1
allele frequency: 8.365960579593749e-6
allele num: 119532
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1829A>C
  hgvsp: ENSP00000401201.2:p.Gln610Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.123A>C
  hgvsp: ENSP00000413687.1:p.Gln42Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.797A>C
  hgvsp: ENSP00000370382.1:p.Gln266Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3698T>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2885T>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2123A>C
  hgvsp: ENSP00000224949.4:p.Gln708Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2126A>C
  hgvsp: ENSP00000370377.2:p.Gln709Pro
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1716A>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3698T>G
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9045
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28385
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13815
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3561
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1086
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8984
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gln709Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

10-3189881-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189881
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189881
    reference: chr 10
allele count: 43
allele frequency: 3.60472134665683e-4
allele num: 119288
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.792C>T
  hgvsp: ENST00000380994.1:c.792C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2118C>T
  hgvsp: ENST00000224949.4:c.2118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2890G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1824C>T
  hgvsp: ENST00000451104.2:c.1824C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2121C>T
  hgvsp: ENST00000380989.2:c.2121C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.118C>T
  hgvsp: ENST00000451454.1:c.118C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3703G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3703G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1711C>T
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9103
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13718
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 28173
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8921
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr707Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

10-3189886-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189886
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189886
    reference: chr 10
allele count: 1
allele frequency: 8.402655239055541e-6
allele num: 119010
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.113A>G
  hgvsp: ENSP00000413687.1:p.Met39Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3708T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1706A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2113A>G
  hgvsp: ENSP00000224949.4:p.Met705Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2116A>G
  hgvsp: ENSP00000370377.2:p.Met706Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2895T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1819A>G
  hgvsp: ENSP00000401201.2:p.Met607Val
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3708T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.787A>G
  hgvsp: ENSP00000370382.1:p.Met263Val
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13658
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9055
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27971
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 646
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Met706Val
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

10-3189887-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189887
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189887
    reference: chr 10
allele count: 1
allele frequency: 8.4088730428348e-6
allele num: 118922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1705G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.786G>A
  hgvsp: ENST00000380994.1:c.786G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2112G>A
  hgvsp: ENST00000224949.4:c.2112G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3709C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2115G>A
  hgvsp: ENST00000380989.2:c.2115G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1818G>A
  hgvsp: ENST00000451104.2:c.1818G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.112G>A
  hgvsp: ENST00000451454.1:c.112G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3709C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2896C>T
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8996
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 438
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2717
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3311
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys705Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: African
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

10-3189899-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189899
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189899
    reference: chr 10
allele count: 2
allele frequency: 1.699177598042548e-5
allele num: 117704
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2103G>A
  hgvsp: ENST00000380989.2:c.2103G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1806G>A
  hgvsp: ENST00000451104.2:c.1806G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2100G>A
  hgvsp: ENST00000224949.4:c.2100G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1693G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.774G>A
  hgvsp: ENST00000380994.1:c.774G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3721C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.100G>A
  hgvsp: ENST00000451454.1:c.100G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3721C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2908C>T
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27206
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8550
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3526
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1444
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2733
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8611
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Lys701Lys
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: DP

10-3189901-T-TGA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189901
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189903
    reference: chr 10
allele count: 1
allele frequency: 8.501810885718658e-6
allele num: 117622
alternate allele: TGA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.770_771dupTC
  hgvsp: ENSP00000370382.1:p.Lys258SerfsTer5
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2099_2100dupTC
  hgvsp: ENSP00000370377.2:p.Lys701SerfsTer5
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3724_386+3725dupGA
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1689_1690dupTC
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.96_97dupTC
  hgvsp: ENSP00000413687.1:p.Lys34SerfsTer5
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2911_2912dupGA
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1802_1803dupTC
  hgvsp: ENSP00000401201.2:p.Lys602SerfsTer5
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2096_2097dupTC
  hgvsp: ENSP00000224949.4:p.Lys700SerfsTer5
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3724_269+3725dupGA
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3521
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36158
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2647
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys701SerfsTer5
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

10-3189912-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189912
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189912
    reference: chr 10
allele count: 1
allele frequency: 8.589736982253604e-6
allele num: 116418
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.761A>G
  hgvsp: ENSP00000370382.1:p.Glu254Gly
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2090A>G
  hgvsp: ENSP00000370377.2:p.Glu697Gly
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2921T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2087A>G
  hgvsp: ENSP00000224949.4:p.Glu696Gly
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3734T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1680A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1793A>G
  hgvsp: ENSP00000401201.2:p.Glu598Gly
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.87A>G
  hgvsp: ENSP00000413687.1:p.Glu30Gly
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3734T>C
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7873
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2031
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3509
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13338
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8455
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3291
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu697Gly
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQ

10-3189916-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189916
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189916
    reference: chr 10
allele count: 1
allele frequency: 8.650519031141869e-6
allele num: 115600
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2086G>A
  hgvsp: ENSP00000370377.2:p.Glu696Lys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.83G>A
  hgvsp: ENSP00000413687.1:p.Glu29Lys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3738C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1789G>A
  hgvsp: ENSP00000401201.2:p.Glu597Lys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3738C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1676G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.757G>A
  hgvsp: ENSP00000370382.1:p.Glu253Lys
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2925C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2083G>A
  hgvsp: ENSP00000224949.4:p.Glu695Lys
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 26332
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13307
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2887
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7438
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1598
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 639
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu696Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

10-3189924-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189924
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189924
    reference: chr 10
allele count: 12
allele frequency: 1.0498687664042e-4
allele num: 114300
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.75G>A
  hgvsp: ENSP00000413687.1:p.Cys26Tyr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1668G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2078G>A
  hgvsp: ENSP00000370377.2:p.Cys693Tyr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3746C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.749G>A
  hgvsp: ENSP00000370382.1:p.Cys250Tyr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3746C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1781G>A
  hgvsp: ENSP00000401201.2:p.Cys594Tyr
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2933C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2075G>A
  hgvsp: ENSP00000224949.4:p.Cys692Tyr
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25782
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7076
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys693Tyr
num of homozygotes: 1
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum

10-3189925-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189925
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189925
    reference: chr 10
allele count: 1
allele frequency: 8.75702751458045e-6
allele num: 114194
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.74T>C
  hgvsp: ENSP00000413687.1:p.Cys26Arg
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3747A>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.748T>C
  hgvsp: ENSP00000370382.1:p.Cys250Arg
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2934A>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2074T>C
  hgvsp: ENSP00000224949.4:p.Cys692Arg
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1667T>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3747A>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2077T>C
  hgvsp: ENSP00000370377.2:p.Cys693Arg
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1780T>C
  hgvsp: ENSP00000401201.2:p.Cys594Arg
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3475
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2831
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25713
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13129
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33245
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3273
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys693Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

10-3189926-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189926
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189926
    reference: chr 10
allele count: 2
allele frequency: 1.757469244288225e-5
allele num: 113800
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1666G>A
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.73G>A
  hgvsp: ENST00000451454.1:c.73G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.747G>A
  hgvsp: ENST00000380994.1:c.747G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1779G>A
  hgvsp: ENST00000451104.2:c.1779G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3748C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3748C>T
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2073G>A
  hgvsp: ENST00000224949.4:c.2073G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2076G>A
  hgvsp: ENST00000380989.2:c.2076G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2935C>T
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13084
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2905
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7019
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25634
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3461
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8239
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro692Pro
num of homozygotes: 0
population: Latino
population: Other
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

10-3189927-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189927
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189927
    reference: chr 10
allele count: 6
allele frequency: 5.281597154979666e-5
allele num: 113602
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.746C>T
  hgvsp: ENSP00000370382.1:p.Pro249Leu
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3749G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3749G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2936G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2072C>T
  hgvsp: ENSP00000224949.4:p.Pro691Leu
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1778C>T
  hgvsp: ENSP00000401201.2:p.Pro593Leu
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2075C>T
  hgvsp: ENSP00000370377.2:p.Pro692Leu
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.72C>T
  hgvsp: ENSP00000413687.1:p.Pro25Leu
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1665C>T
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7006
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2578
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3263
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro692Leu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

10-3189933-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189933
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189933
    reference: chr 10
allele count: 1
allele frequency: 8.905353898763937e-6
allele num: 112292
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.70-4A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3755T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.744-4A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2070-4A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1776-4A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2942T>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2073-4A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1659A>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3755T>C
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6974
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3743
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3252
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
hgvs: c.2073-4A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: Other
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

10-3189937-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189937
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189937
    reference: chr 10
allele count: 6
allele frequency: 5.392385951037136e-5
allele num: 111268
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.744-8T>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2070-8T>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2946A>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2073-8T>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3759A>G
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1776-8T>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.70-8T>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1655T>C
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3759A>G
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12174
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24758
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3274
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31601
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 3.75e1
  variant carriers: 0
hgvs: c.2073-8T>C
num of homozygotes: 0
population: Latino
population: Other
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-3189976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3189976
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3189976
    reference: chr 10
allele count: 6
allele frequency: 5.801697963604015e-5
allele num: 103418
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1616C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1776-47C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2070-47C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2073-47C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3798G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.2985G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3798G>A
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.70-47C>T
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.744-47C>T
  variant of: http://identifiers.org/hgnc/17663
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5781
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8864
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12054
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12222
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2472
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3115
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3011
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5424
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2560
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

10-3190131-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 3190131
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 3190131
    reference: chr 10
allele count: 1
allele frequency: 8.566190957528826e-6
allele num: 116738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370382
  ensembl transcript: ENST00000380994
  gene symbol: PITRM1
  hgvsc: ENST00000380994.1:c.743+48C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000430356
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000430356.2:n.3140G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000107959
  ensembl transcript: ENST00000464395
  gene symbol: PITRM1
  hgvsc: ENST00000464395.1:n.1461C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000370377
  ensembl transcript: ENST00000380989
  gene symbol: PITRM1
  hgvsc: ENST00000380989.2:c.2072+48C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000224949
  ensembl transcript: ENST00000224949
  gene symbol: PITRM1
  hgvsc: ENST00000224949.4:c.2069+48C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000401201
  ensembl transcript: ENST00000451104
  gene symbol: PITRM1
  hgvsc: ENST00000451104.2:c.1776-202C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000601046
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000601046.1:n.386+3953G>C
  variant of: http://identifiers.org/hgnc/44675
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000107959
  ensembl protein: ENSP00000413687
  ensembl transcript: ENST00000451454
  gene symbol: PITRM1
  hgvsc: ENST00000451454.1:c.69+48C>G
  variant of: http://identifiers.org/hgnc/17663
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000237399
  ensembl transcript: ENST00000598280
  gene symbol: PITRM1-AS1
  hgvsc: ENST00000598280.1:n.269+3953G>C
  variant of: http://identifiers.org/hgnc/44675
canonical: true
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13181
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7015
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3348
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9088
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1636
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5383
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11735
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 151
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3359
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2624
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7732
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 856
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3710
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16212
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021659174499387e-4
allele num: 9788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66534
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.666e1

FS
type: SiteQuality
SIO_000300: 2.265e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.003e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.563e0

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.363e0

VQSLOD
type: SiteQuality
SIO_000300: 2.55e-1

DP
type: SiteQuality
SIO_000300: 2.196229e6

GenotypeQuality
all individuals: 3352
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7725
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4635
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19318
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14012
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2619
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.650519031141868e-5
allele num: 11560
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.189591e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.29e0

MQ
type: SiteQuality
SIO_000300: 6.131e1

MQRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.648e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.16e-1

GenotypeQuality
all individuals: 4439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 859
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2610
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7009
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3154
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3648
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.052789893217025e-4
allele num: 66490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.086636697997548e-4
allele num: 9788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.43e-1

FS
type: SiteQuality
SIO_000300: 4.454e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

DP
type: SiteQuality
SIO_000300: 2.171253e6

QD
type: SiteQuality
SIO_000300: 1.547e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

GenotypeQuality
all individuals: 632
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17757
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14008
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 37
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 624
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 405
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4439
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1837
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3648
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7009
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.511956685215822e-5
allele num: 66490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.83e-1

FS
type: SiteQuality
SIO_000300: 4.454e0

QD
type: SiteQuality
SIO_000300: 1.547e1

DP
type: SiteQuality
SIO_000300: 2.171253e6

VQSLOD
type: SiteQuality
SIO_000300: 1.96e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

MQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

GenotypeQuality
all individuals: 978
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2606
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13994
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3141
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3642
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6905
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4422
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.183527083848628e-5
allele num: 16172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.171e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.359e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -7.239e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

DP
type: SiteQuality
SIO_000300: 2.160795e6

QD
type: SiteQuality
SIO_000300: 1.682e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e0

GenotypeQuality
all individuals: 748
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4390
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6834
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3629
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13995
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17623
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2605
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.855976243504083e-4
allele num: 16164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.041e-1

DP
type: SiteQuality
SIO_000300: 2.152687e6

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

QD
type: SiteQuality
SIO_000300: 9.529999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e0

FS
type: SiteQuality
SIO_000300: 8.363e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.61e-1

GenotypeQuality
all individuals: 6754
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2606
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 620
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3096
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 697
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1368
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 465
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13991
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1827
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4375
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.088307440719542e-4
allele num: 9784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.52e0

DP
type: SiteQuality
SIO_000300: 2.14654e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.08e-1

FS
type: SiteQuality
SIO_000300: 6.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.705e0

QD
type: SiteQuality
SIO_000300: 1.522e1

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.18e-1

GenotypeQuality
all individuals: 1673
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 819
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4331
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6467
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3029
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13989
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 623
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1017
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1820
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3608
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66396
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.132e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -3.058e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e0

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

QD
type: SiteQuality
SIO_000300: 2.898e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 2.131793e6

GenotypeQuality
all individuals: 1602
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6408
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1685
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1480
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 565
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2606
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13987
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1818
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3607
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506205566935775e-5
allele num: 66392
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.902e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.515e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

DP
type: SiteQuality
SIO_000300: 2.131424e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
SIO_000300: 1.425e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.19e0

GenotypeQuality
all individuals: 2227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1855
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1721
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1002
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5994
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1805
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12464
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2937
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.735809755250825e-4
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.662843097091356e-3
allele num: 9764
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15910
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.239e0

MQRankSum
type: SiteQuality
SIO_000300: -8.999999999999999e-3

FS
type: SiteQuality
SIO_000300: 1.291e0

VQSLOD
type: SiteQuality
SIO_000300: 2.94e0

DP
type: SiteQuality
SIO_000300: 2.110637e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.973e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.16e-1

QD
type: SiteQuality
SIO_000300: 1.33e1

GenotypeQuality
all individuals: 11056
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2284
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3588
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1884
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4238
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2784
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5730
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13993
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2653
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.049180327868852e-4
allele num: 9760
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66192
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.74e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

QD
type: SiteQuality
SIO_000300: 1.659e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.105628e6

VQSLOD
type: SiteQuality
SIO_000300: 4.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.84e0

GenotypeQuality
all individuals: 146
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2921
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3601
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2919
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2813
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5662
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4249
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66112
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15932
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.230012300123001e-3
allele num: 9756
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.684e0

VQSLOD
type: SiteQuality
SIO_000300: 4.19e0

FS
type: SiteQuality
SIO_000300: 1.445e0

DP
type: SiteQuality
SIO_000300: 2.105413e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

QD
type: SiteQuality
SIO_000300: 1.354e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

GenotypeQuality
all individuals: 5615
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 994
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1281
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 13976
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 291
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2917
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1804
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3101
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1861
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4246
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515105602860519e-5
allele num: 66002
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.075e0

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.66e-1

DP
type: SiteQuality
SIO_000300: 2.10605e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

MQ
type: SiteQuality
SIO_000300: 5.878e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.78e-1

QD
type: SiteQuality
SIO_000300: 1.568e1

GenotypeQuality
all individuals: 3921
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9232
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509479531457553e-5
allele num: 66248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.02e-1

QD
type: SiteQuality
SIO_000300: 1.444e1

MQRankSum
type: SiteQuality
SIO_000300: 8.25e-1

DP
type: SiteQuality
SIO_000300: 1.829642e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.02e-2

GenotypeQuality
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37041
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9234
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3919
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 199
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66246
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.592016588906169e-4
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 6
allele frequency: 6.276150627615063e-4
allele num: 9560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.923e0

MQ
type: SiteQuality
SIO_000300: 5.973e1

VQSLOD
type: SiteQuality
SIO_000300: 4.01e0

DP
type: SiteQuality
SIO_000300: 1.830113e6

QD
type: SiteQuality
SIO_000300: 1.366e1

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2586
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9233
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 886
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1687
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2841
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66262
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.048038707447727e-4
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 134
allele frequency: 1.399623981616879e-2
allele num: 9574
num of homozygotes: 1

South Asian
type: Population
allele count: 3
allele frequency: 1.817300702689605e-4
allele num: 16508
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.833676e6

FS
type: SiteQuality
SIO_000300: 7.99e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.56e-2

QD
type: SiteQuality
SIO_000300: 1.83e1

MQRankSum
type: SiteQuality
SIO_000300: -1.914e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.78e-1

MQ
type: SiteQuality
SIO_000300: 5.521e1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

GenotypeQuality
all individuals: 9267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37450
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3831
bin: 9.75e1
variant carriers: 33

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 9.25e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 3.029036975141007e-3
allele num: 9574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017865765330758e-5
allele num: 66272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.08e0

MQRankSum
type: SiteQuality
SIO_000300: 4.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

DP
type: SiteQuality
SIO_000300: 1.824287e6

FS
type: SiteQuality
SIO_000300: 1.663e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

QD
type: SiteQuality
SIO_000300: 1.292e1

MQ
type: SiteQuality
SIO_000300: 5.968e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.52e-1

GenotypeQuality
all individuals: 426
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37590
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9293
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1695
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3804
bin: 9.75e1
variant carriers: 42

African
type: Population
allele count: 38
allele frequency: 3.958333333333334e-3
allele num: 9600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728011059270779e-4
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66288
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.6e-3

MQ
type: SiteQuality
SIO_000300: 5.981e1

VQSLOD
type: SiteQuality
SIO_000300: 4.56e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.823302e6

QD
type: SiteQuality
SIO_000300: 1.356e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.25e-1

GenotypeQuality
all individuals: 9299
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37656
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2593
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3763
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508341126429153e-5
allele num: 66298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.36e-1

DP
type: SiteQuality
SIO_000300: 1.819748e6

MQ
type: SiteQuality
SIO_000300: 5.992e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

QD
type: SiteQuality
SIO_000300: 1.447e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.16e0

VQSLOD
type: SiteQuality
SIO_000300: 4.27e0

MQRankSum
type: SiteQuality
SIO_000300: 1.05e-1

GenotypeQuality
all individuals: 3763
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9298
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37726
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50793172085168e-5
allele num: 66316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

VQSLOD
type: SiteQuality
SIO_000300: 6.56e-1

QD
type: SiteQuality
SIO_000300: 1.409e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e-1

DP
type: SiteQuality
SIO_000300: 1.820305e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

MQ
type: SiteQuality
SIO_000300: 5.971e1

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 888
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9620
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.046226215963574e-5
allele num: 66326
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

FS
type: SiteQuality
SIO_000300: 7.01e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.26e0

QD
type: SiteQuality
SIO_000300: 1.363e1

VQSLOD
type: SiteQuality
SIO_000300: 2.89e0

DP
type: SiteQuality
SIO_000300: 1.820902e6

ClippingRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9302
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3760
bin: 9.75e1
variant carriers: 10

African
type: Population
allele count: 2
allele frequency: 2.075119319360863e-4
allele num: 9638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.534886524608939e-5
allele num: 66358
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.116071428571429e-3
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.728309713100588e-4
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.463e1

VQSLOD
type: SiteQuality
SIO_000300: 1.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.500000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.13e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

DP
type: SiteQuality
SIO_000300: 1.821367e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.84e-1

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 266
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38037
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1697
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2848
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3750
bin: 9.75e1
variant carriers: 50

GenotypeQuality
all individuals: 9318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2590
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
type: Population
allele count: 50
allele frequency: 5.80046403712297e-3
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.826264e6

FS
type: SiteQuality
SIO_000300: 1.392e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.683e0

VQSLOD
type: SiteQuality
SIO_000300: 1.02e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

MQ
type: SiteQuality
SIO_000300: 5.971e1

QD
type: SiteQuality
SIO_000300: 1.099e1

GenotypeQuality
all individuals: 2598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9320
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504257047444267e-5
allele num: 66478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.987e1

QD
type: SiteQuality
SIO_000300: 1.353e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.88e0

DP
type: SiteQuality
SIO_000300: 1.818148e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

VQSLOD
type: SiteQuality
SIO_000300: 8.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

FS
type: SiteQuality
SIO_000300: 7.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.717e0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9324
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38188
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2597
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50253929140247e-5
allele num: 66554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9728
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.983e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.61e0

DP
type: SiteQuality
SIO_000300: 1.820216e6

QD
type: SiteQuality
SIO_000300: 1.327e1

MQRankSum
type: SiteQuality
SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

VQSLOD
type: SiteQuality
SIO_000300: -1.377e0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3704
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38191
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.831e1

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

FS
type: SiteQuality
SIO_000300: 4.851e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

DP
type: SiteQuality
SIO_000300: 1.820175e6

BaseQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

QD
type: SiteQuality
SIO_000300: 1.278e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.224e0

VQSLOD
type: SiteQuality
SIO_000300: -8.89e-1

GenotypeQuality
all individuals: 61
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9320
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 890
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38191
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.054653790836244e-4
allele num: 9734
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.01e-1

FS
type: SiteQuality
SIO_000300: 4.851e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

QD
type: SiteQuality
SIO_000300: 1.278e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.224e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: -8.89e-1

MQ
type: SiteQuality
SIO_000300: 5.831e1

MQRankSum
type: SiteQuality
SIO_000300: 2.45e-1

DP
type: SiteQuality
SIO_000300: 1.820175e6

GenotypeQuality
all individuals: 39
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38239
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3701
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.506263706552107e-5
allele num: 66574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.734e0

FS
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

MQRankSum
type: SiteQuality
SIO_000300: 2.09e-1

DP
type: SiteQuality
SIO_000300: 1.820412e6

QD
type: SiteQuality
SIO_000300: 1.242e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

GenotypeQuality
all individuals: 45
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38239
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2856
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9320
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3700
bin: 9.75e1
variant carriers: 11

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.012527413104215e-5
allele num: 66574
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.32152117545376e-4
allele num: 11570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.014e0

MQRankSum
type: SiteQuality
SIO_000300: 3.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.0e0

QD
type: SiteQuality
SIO_000300: 1.284e1

DP
type: SiteQuality
SIO_000300: 1.820907e6

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3700
bin: 9.75e1
variant carriers: 107

GenotypeQuality
all individuals: 43
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9319
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 7
allele frequency: 6.050129645635263e-4
allele num: 11570
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 93
allele frequency: 1.396312533781755e-3
allele num: 66604
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.099200655872105e-4
allele num: 9758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.232142857142857e-3
allele num: 896
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.97e1

DP
type: SiteQuality
SIO_000300: 1.830573e6

BaseQRankSum
type: SiteQuality
SIO_000300: 7.68e-1

FS
type: SiteQuality
SIO_000300: 5.3e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.93e-1

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38331
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3601
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 9344
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9756
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.002462018855461e-5
allele num: 66612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.81296e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.94e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.32e-1

FS
type: SiteQuality
SIO_000300: 2.741e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.69e-1

QD
type: SiteQuality
SIO_000300: 1.316e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
all individuals: 672
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38390
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2599
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9344
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 896
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.505704335294824e-5
allele num: 66616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.685e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.9e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.25e0

DP
type: SiteQuality
SIO_000300: 1.814121e6

QD
type: SiteQuality
SIO_000300: 1.263e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

GenotypeQuality
all individuals: 2598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3595
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 38403
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9348
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211240310077519e-4
allele num: 16512
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.256e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.41e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.27e-1

QD
type: SiteQuality
SIO_000300: 1.018e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.69e-1

DP
type: SiteQuality
SIO_000300: 1.813313e6

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3594
bin: 9.75e1
variant carriers: 36

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9344
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 670
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2600
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.024170421958214e-4
allele num: 9764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Latino
type: Population
allele count: 32
allele frequency: 2.766251728907331e-3
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.503287399801856e-5
allele num: 66618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.24e0

DP
type: SiteQuality
SIO_000300: 1.816789e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.78e-1

QD
type: SiteQuality
SIO_000300: 1.236e1

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-1

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2854
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3567
bin: 9.75e1
variant carriers: 54

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9363
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.502611514678514e-5
allele num: 66628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.2271714922049e-3
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.593360995850622e-4
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.070624360286592e-4
allele num: 9770
num of homozygotes: 0

South Asian
type: Population
allele count: 43
allele frequency: 2.6047976738551e-3
allele num: 16508
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.312e1

FS
type: SiteQuality
SIO_000300: 5.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.05e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.7e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

DP
type: SiteQuality
SIO_000300: 1.815873e6

GenotypeQuality
all individuals: 9372
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2604
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38508
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3516
bin: 9.75e1
variant carriers: 6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023331968890708e-4
allele num: 9772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.502325720973501e-5
allele num: 66646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.255e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.21e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.24e0

DP
type: SiteQuality
SIO_000300: 1.80879e6

QD
type: SiteQuality
SIO_000300: 1.158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

MQ
type: SiteQuality
SIO_000300: 5.949e1

FS
type: SiteQuality
SIO_000300: 1.113e0

MQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38558
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3527
bin: 9.75e1
variant carriers: 104

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2603
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 95
allele frequency: 9.713701431492843e-3
allele num: 9780
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.501260352898812e-5
allele num: 66648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.052222030088189e-4
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.73e0

DP
type: SiteQuality
SIO_000300: 1.815912e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.21e-1

MQ
type: SiteQuality
SIO_000300: 5.964e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.84e-2

QD
type: SiteQuality
SIO_000300: 1.267e1

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1699
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38655
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2608
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2857
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3432
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

African
type: Population
allele count: 26
allele frequency: 2.656313853698406e-3
allele num: 9788
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.24e1

DP
type: SiteQuality
SIO_000300: 1.80415e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

FS
type: SiteQuality
SIO_000300: 5.47e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.47e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-1

GenotypeQuality
all individuals: 669
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3410
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2858
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9387
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38659
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 895
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500105007350515e-5
allele num: 66662
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.043735949315349e-4
allele num: 9786
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.320724065908564e-4
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.423361201987156e-4
allele num: 16506
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.312e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.566e0

VQSLOD
type: SiteQuality
SIO_000300: 1.48e0

FS
type: SiteQuality
SIO_000300: 1.19e0

MQRankSum
type: SiteQuality
SIO_000300: 6.54e-1

DP
type: SiteQuality
SIO_000300: 1.801278e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.4e-3

MQ
type: SiteQuality
SIO_000300: 5.972e1

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1693
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38678
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9382
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3401
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 16
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.5e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

QD
type: SiteQuality
SIO_000300: 1.729e1

VQSLOD
type: SiteQuality
SIO_000300: 3.73e-1

FS
type: SiteQuality
SIO_000300: 6.31e-1

DP
type: SiteQuality
SIO_000300: 1.799752e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9364
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3400
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 38639
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2853
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.021659174499387e-4
allele num: 9788
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.238e0

VQSLOD
type: SiteQuality
SIO_000300: -1.664e0

DP
type: SiteQuality
SIO_000300: 1.798791e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 2.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.183e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.1e-3

QD
type: SiteQuality
SIO_000300: 1.147e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9350
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3400
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1688
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38647
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.043318348998774e-4
allele num: 9788
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.366e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.89e-1

DP
type: SiteQuality
SIO_000300: 1.798894e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

QD
type: SiteQuality
SIO_000300: 1.279e1

FS
type: SiteQuality
SIO_000300: 8.619999999999999e0

MQ
type: SiteQuality
SIO_000300: 5.863e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3401
bin: 9.75e1
variant carriers: 13

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9351
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38692
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1684
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.281553398058253e-4
allele num: 16480
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160631383472609e-4
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

MQRankSum
type: SiteQuality
SIO_000300: -1.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e0

FS
type: SiteQuality
SIO_000300: 1.251e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

QD
type: SiteQuality
SIO_000300: 1.242e1

DP
type: SiteQuality
SIO_000300: 1.79891e6

GenotypeQuality
all individuals: 21
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3392
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2594
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38713
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1683
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2844
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9348
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9788
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.070908207867897e-5
allele num: 16472
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.362e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.75e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

MQ
type: SiteQuality
SIO_000300: 5.951e1

QD
type: SiteQuality
SIO_000300: 1.656e1

VQSLOD
type: SiteQuality
SIO_000300: -7.097e-1

DP
type: SiteQuality
SIO_000300: 1.797873e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3390
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2843
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38645
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9328
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 665
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00147072065312e-5
allele num: 66634
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.59e-1

DP
type: SiteQuality
SIO_000300: 1.797274e6

FS
type: SiteQuality
SIO_000300: 4.93e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.392e0

QD
type: SiteQuality
SIO_000300: 1.45e1

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

MQ
type: SiteQuality
SIO_000300: 5.951e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

GenotypeQuality
all individuals: 342
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3383
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 29
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 38427
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 4.889377826671556e-4
allele num: 16362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.209e1

MQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

FS
type: SiteQuality
SIO_000300: 1.445e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.48e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.398e0

DP
type: SiteQuality
SIO_000300: 1.792873e6

GenotypeQuality
all individuals: 3375
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9267
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 893
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38483
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2817
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1673
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 660
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9774
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.756e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.905e0

MQRankSum
type: SiteQuality
SIO_000300: -3.66e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e0

VQSLOD
type: SiteQuality
SIO_000300: -1.572e0

MQ
type: SiteQuality
SIO_000300: 5.903e1

QD
type: SiteQuality
SIO_000300: 1.468e1

FS
type: SiteQuality
SIO_000300: 1.716e0

DP
type: SiteQuality
SIO_000300: 1.792222e6

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3374
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2816
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 659
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38353
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2565
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.023331968890708e-4
allele num: 9772
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.57e-1

QD
type: SiteQuality
SIO_000300: 1.585e1

DP
type: SiteQuality
SIO_000300: 1.790668e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.58e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 5.986e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-2

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9221
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38190
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.024800163968026e-4
allele num: 9758
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.787289e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.16e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 6.023e0

MQRankSum
type: SiteQuality
SIO_000300: 8.86e-1

QD
type: SiteQuality
SIO_000300: 1.246e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.25e-1

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9219
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3373
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 45
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2560
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 657
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1671
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504709741490866e-5
allele num: 66458
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.723e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.786543e6

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.07e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.003e0

QD
type: SiteQuality
SIO_000300: 8.93e0

GenotypeQuality
all individuals: 644
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3372
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 656
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9189
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2802
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2555
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16196
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.25e-1

FS
type: SiteQuality
SIO_000300: 8.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.6e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

QD
type: SiteQuality
SIO_000300: 1.301e1

DP
type: SiteQuality
SIO_000300: 1.784169e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.569e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.3e-3

GenotypeQuality
all individuals: 122
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2785
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.026694045174538e-4
allele num: 9740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16164
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.783927e6

QD
type: SiteQuality
SIO_000300: 1.304e1

FS
type: SiteQuality
SIO_000300: 2.513e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.24e-1

MQ
type: SiteQuality
SIO_000300: 5.972e1

VQSLOD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

GenotypeQuality
all individuals: 53
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3366
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 85
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 654
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37966
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2532
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 892
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.186587478346944e-5
allele num: 16164
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.513e0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

VQSLOD
type: SiteQuality
SIO_000300: 8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.98e-1

QD
type: SiteQuality
SIO_000300: 1.304e1

DP
type: SiteQuality
SIO_000300: 1.783927e6

ClippingRankSum
type: SiteQuality
SIO_000300: 8.24e-1

GenotypeQuality
all individuals: 733
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2526
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3364
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 654
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37912
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 891
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50652324565368e-5
allele num: 66378
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.027326895418122e-4
allele num: 9734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.781189e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.15e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.621e0

FS
type: SiteQuality
SIO_000300: 7.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 4.25e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e0

GenotypeQuality
all individuals: 120
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2510
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37465
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3362
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 97
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2778
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.75e-1

MQ
type: SiteQuality
SIO_000300: 5.955e1

DP
type: SiteQuality
SIO_000300: 1.772339e6

QD
type: SiteQuality
SIO_000300: 1.618e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.543e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.98e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

GenotypeQuality
all individuals: 202
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2466
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1649
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37376
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3360
bin: 9.75e1
variant carriers: 43

GenotypeQuality
all individuals: 60
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2745
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 29
allele frequency: 3.373662168450442e-3
allele num: 8596
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.734304543877905e-4
allele num: 11532
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.34437254155564e-5
allele num: 15762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.021695775669306e-5
allele num: 66188
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 9.261164848734307e-4
allele num: 9718
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.766764e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 9.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.54e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.381e1

GenotypeQuality
all individuals: 176
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37296
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1647
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8866
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1574
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2449
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2722
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3312
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11532
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.030715316429602e-4
allele num: 9702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66100
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.476e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.26e0

VQSLOD
type: SiteQuality
SIO_000300: 8.02e-1

DP
type: SiteQuality
SIO_000300: 1.758193e6

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.43e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.574e0

QD
type: SiteQuality
SIO_000300: 1.452e1

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37183
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8842
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 261
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1645
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 645
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66072
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.435834727764191e-5
allele num: 15538
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8594
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9700
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.164e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.84e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.441e0

QD
type: SiteQuality
SIO_000300: 1.134e1

DP
type: SiteQuality
SIO_000300: 1.756755e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.21e-1

GenotypeQuality
all individuals: 143
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36077
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2381
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2650
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3303
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 881
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14842
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.333722287047841e-4
allele num: 8570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65680
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

FS
type: SiteQuality
SIO_000300: 5.598e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.222e0

VQSLOD
type: SiteQuality
SIO_000300: 3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.26e0

QD
type: SiteQuality
SIO_000300: 1.261e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.389e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.734163e6

GenotypeQuality
all individuals: 104
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2376
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1621
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 880
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8601
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2838
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3300
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14808
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523461304082876e-5
allele num: 65640
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.781e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 1.26e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.474e0

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

DP
type: SiteQuality
SIO_000300: 1.732263e6

QD
type: SiteQuality
SIO_000300: 1.83e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

GenotypeQuality
all individuals: 2346
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2617
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 446
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3849
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35116
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9564
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.170138076293003e-4
allele num: 8546
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.176e0

VQSLOD
type: SiteQuality
SIO_000300: 2.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 4.87e0

QD
type: SiteQuality
SIO_000300: 1.572e1

DP
type: SiteQuality
SIO_000300: 1.712715e6

MQ
type: SiteQuality
SIO_000300: 5.951e1

GenotypeQuality
all individuals: 121
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2604
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4356
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34314
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2325
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3286
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8386
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 878
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.538130248869474e-5
allele num: 65014
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 840
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

DP
type: SiteQuality
SIO_000300: 1.701136e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.249e0

MQ
type: SiteQuality
SIO_000300: 5.85e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.580000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.321e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

GenotypeQuality
all individuals: 635
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 33389
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4948
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1582
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 81
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8275
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2589
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3284
bin: 9.75e1
variant carriers: 11

GenotypeQuality
all individuals: 159
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.548083472660846e-4
allele num: 64596
num of homozygotes: 1

Latino
type: Population
allele count: 1
allele frequency: 8.755034144633164e-5
allele num: 11422
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.71962328238382e-5
allele num: 12954
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.949e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.929e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.1e-3

DP
type: SiteQuality
SIO_000300: 1.681745e6

QD
type: SiteQuality
SIO_000300: 1.316e1

VQSLOD
type: SiteQuality
SIO_000300: 7.47e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.4e-2

GenotypeQuality
all individuals: 146
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8263
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5073
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2307
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2591
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 572
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 877
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64556
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9476
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.761170492377782e-5
allele num: 11414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.97e-1

DP
type: SiteQuality
SIO_000300: 1.678312e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

FS
type: SiteQuality
SIO_000300: 3.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.9e-1

QD
type: SiteQuality
SIO_000300: 1.421e1

GenotypeQuality
all individuals: 275
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3271
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 112
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5109
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2580
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2306
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33083
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1573
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.552553951249806e-5
allele num: 64410
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.19019281123542e-4
allele num: 8402
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.274e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.12e0

DP
type: SiteQuality
SIO_000300: 1.674736e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.83e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.246e0

FS
type: SiteQuality
SIO_000300: 3.536e0

QD
type: SiteQuality
SIO_000300: 1.006e1

GenotypeQuality
all individuals: 170
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32975
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5218
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8218
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 872
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2300
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12648
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.663889061625521e-5
allele num: 64324
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 824
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.633889376646181e-4
allele num: 11390
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

FS
type: SiteQuality
SIO_000300: 2.565e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.84e-1

QD
type: SiteQuality
SIO_000300: 1.383e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.2e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.671142e6

GenotypeQuality
all individuals: 706
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1554
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5661
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8129
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2283
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32212
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565484204264379e-5
allele num: 63878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8292
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12042
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.958e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.386e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.14e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.54e-1

DP
type: SiteQuality
SIO_000300: 1.648366e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.87e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.69e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.463e1

GenotypeQuality
all individuals: 7898
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5968
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 848
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 807
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3239
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1531
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2241
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8250
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6554
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.45000945000945e-5
allele num: 63492
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.6e1

MQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.43e-1

FS
type: SiteQuality
SIO_000300: 6.07e-1

MQ
type: SiteQuality
SIO_000300: 5.922e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

DP
type: SiteQuality
SIO_000300: 1.627964e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 845
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1978
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5836
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3676
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1354
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5419
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1472
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3555
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5969
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7800
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1932
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 805
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.672856234735187e-5
allele num: 59778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7642
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.772873042822109e-4
allele num: 10602
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.076889941847943e-4
allele num: 9286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 756
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.26e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.4e0

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.586e0

QD
type: SiteQuality
SIO_000300: 1.867e1

DP
type: SiteQuality
SIO_000300: 1.305302e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3