7-42964416-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42964416
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42964416
    reference: chr 7
allele count: 1
allele frequency: 8.449799739746167e-6
allele num: 118346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*252-20T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.83-20T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.18-20T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-20T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*106-20T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.119-20T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.252-20T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.252-20T>A
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9050
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23043
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1997
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1618
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5360
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29146
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

7-42964423-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42964423
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42964423
    reference: chr 7
allele count: 1
allele frequency: 8.478887569950822e-6
allele num: 117940
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.119-27A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.83-27A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-27A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*106-27A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.252-27A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.18-27A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*252-27A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.252-27A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7995
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9820
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5144
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2561
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4680
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5703
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2156
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-42964427-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42964427
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42964427
    reference: chr 7
allele count: 1
allele frequency: 8.513101663460065e-6
allele num: 117466
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*252-31G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*106-31G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.252-31G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-31G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.83-31G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.119-31G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.18-31G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.252-31G>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9217
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8866
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4522
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 725
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2462
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP

7-42966094-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966094
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966094
    reference: chr 7
allele count: 1
allele frequency: 8.558566268978621e-6
allele num: 116842
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*105+41A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+888A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.17+41A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1698A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+888A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.251+41A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*251+41A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.251+41A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7707
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11931
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 751
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1314
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1822
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP

7-42966098-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966098
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966098
    reference: chr 7
allele count: 19
allele frequency: 1.6249593760156e-4
allele num: 116926
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*251+37A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*105+37A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.17+37A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1702A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+884A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+884A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.251+37A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.251+37A>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7879
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 23881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 4.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4190
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11924
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3594
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

7-42966101-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966101
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966101
    reference: chr 7
allele count: 26
allele frequency: 2.222754163389529e-4
allele num: 116972
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.17+34C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+881C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*251+34C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.251+34C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1705C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+881C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*105+34C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.251+34C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4193
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8032
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11934
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28691
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1966
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ

7-42966105-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966105
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966105
    reference: chr 7
allele count: 1
allele frequency: 8.542043940274029e-6
allele num: 117068
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.251+30C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*251+30C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1709C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*105+30C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+877C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+877C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.17+30C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.251+30C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11933
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23931
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8225
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 643
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9177
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2298
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ

http://identifiers.org/exac.variant/7-42966114-AC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966114
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966113
    reference: chr 7
allele count: 1
allele frequency: 8.511217785040683e-6
allele num: 117492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*251+20delG
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+867delG
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*105+20delG
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1719delG
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+867delG
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.251+20delG
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.17+20delG
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.251+20delG
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: VQSRTrancheINDEL95.00to96.00
genotype depth: GenotypeDepth
  all individuals: 1757
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24001
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8859
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1809
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11941
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1911
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: AC
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

7-42966118-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966118
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966118
    reference: chr 7
allele count: 2
allele frequency: 1.698686915014694e-5
allele num: 117738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*105+17A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+864A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+864A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.251+17A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.17+17A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*251+17A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.251+17A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1722A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9052
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24077
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1702
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1602
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11946
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3241
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

7-42966121-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966121
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966121
    reference: chr 7
allele count: 4
allele frequency: 3.391382497074933e-5
allele num: 117946
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.251+14T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+861T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1725T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*251+14T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*105+14T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+861T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.17+14T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.251+14T>C
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1616
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24104
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11954
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 143
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6313
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

7-42966127-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966127
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966127
    reference: chr 7
allele count: 1
allele frequency: 8.449371366770313e-6
allele num: 118352
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+855A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.251+8A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*251+8A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*105+8A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.17+8A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.251+8A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1731A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+855A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24203
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11959
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30547
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 2.25e1
  variant carriers: 0
hgvs: c.251+8A>G
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

7-42966127-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966127
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966127
    reference: chr 7
allele count: 1
allele frequency: 8.449371366770313e-6
allele num: 118352
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.251+8A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.17+8A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+855A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*251+8A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*105+8A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.251+8A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1731A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+855A>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2261
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24203
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9772
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2297
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3592
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9242
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 2.25e1
  variant carriers: 0
hgvs: c.251+8A>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

7-42966143-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966143
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966143
    reference: chr 7
allele count: 8
allele frequency: 6.65059439687422e-5
allele num: 120290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.9C>T
  hgvsp: ENST00000538645.1:c.9C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*97C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.243C>T
  hgvsp: ENST00000223321.4:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*243C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+839C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.243C>T
  hgvsp: ENST00000442788.1:c.243C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+839C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1747C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 600
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3612
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9364
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro81Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

7-42966143-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966143
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966143
    reference: chr 7
allele count: 2
allele frequency: 1.662648599218555e-5
allele num: 120290
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.243C>G
  hgvsp: ENST00000442788.1:c.243C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*243C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+839C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+839C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.243C>G
  hgvsp: ENST00000223321.4:c.243C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1747C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.9C>G
  hgvsp: ENST00000538645.1:c.9C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*97C>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4183
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 842
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1307
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6305
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro81Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

7-42966145-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966145
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966145
    reference: chr 7
allele count: 2
allele frequency: 1.660743348722888e-5
allele num: 120428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1749C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+837C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.241C>T
  hgvsp: ENSP00000455744.1:p.Pro81Ser
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+837C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.241C>T
  hgvsp: ENSP00000223321.4:p.Pro81Ser
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.7C>T
  hgvsp: ENSP00000440009.1:p.Pro3Ser
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*95C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*241C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11272
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2262
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6297
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Pro81Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

7-42966146-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966146
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966146
    reference: chr 7
allele count: 12
allele frequency: 9.959663363378318e-5
allele num: 120486
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1750C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.240C>T
  hgvsp: ENST00000223321.4:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*240C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.6C>T
  hgvsp: ENST00000538645.1:c.6C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+836C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+836C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.240C>T
  hgvsp: ENST00000442788.1:c.240C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*94C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24739
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9390
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3621
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly80Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

7-42966158-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966158
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966158
    reference: chr 7
allele count: 3
allele frequency: 2.479953707530793e-5
allele num: 120970
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*228C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.228C>T
  hgvsp: ENST00000223321.4:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1762C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.228C>T
  hgvsp: ENST00000442788.1:c.228C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*82C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+824C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+824C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-7C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4177
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25006
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12153
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33035
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6284
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3614
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9433
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Tyr76Tyr
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: MQ
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum

7-42966188-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966188
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966188
    reference: chr 7
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.198A>G
  hgvsp: ENST00000442788.1:c.198A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+794A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+794A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1792A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*52A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.198A>G
  hgvsp: ENST00000223321.4:c.198A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*198A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-37A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25123
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11398
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12101
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu66Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum

7-42966191-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966191
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966191
    reference: chr 7
allele count: 1
allele frequency: 8.252731654177533e-6
allele num: 121172
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1795A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.195A>G
  hgvsp: ENST00000223321.4:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+791A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.195A>G
  hgvsp: ENST00000442788.1:c.195A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*195A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*49A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-40A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+791A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25116
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4159
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33181
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 991
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val65Val
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

7-42966194-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966194
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966194
    reference: chr 7
allele count: 3
allele frequency: 2.475942095967516e-5
allele num: 121166
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*46A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1798A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.192A>G
  hgvsp: ENST00000223321.4:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.192A>G
  hgvsp: ENST00000442788.1:c.192A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*192A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-43A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+788A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+788A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1295
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12076
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33254
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9413
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1295
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys64Lys
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-42966203-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966203
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966203
    reference: chr 7
allele count: 1
allele frequency: 8.259275166011431e-6
allele num: 121076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*37T>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+779T>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1807T>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*183T>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+779T>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-52T>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.183T>G
  hgvsp: ENSP00000455744.1:p.Ser61Arg
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.183T>G
  hgvsp: ENSP00000223321.4:p.Ser61Arg
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11400
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25033
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2270
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9375
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser61Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

7-42966207-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966207
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966207
    reference: chr 7
allele count: 1
allele frequency: 8.261322141995606e-6
allele num: 121046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*179G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.179G>A
  hgvsp: ENSP00000223321.4:p.Arg60Gln
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-56G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.179G>A
  hgvsp: ENSP00000455744.1:p.Arg60Gln
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*33G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+775G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+775G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1811G>A
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11956
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3521
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg60Gln
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: QD

7-42966212-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966212
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966212
    reference: chr 7
allele count: 5
allele frequency: 4.13352953820208e-5
allele num: 120962
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.174T>A
  hgvsp: ENSP00000223321.4:p.Asp58Glu
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.174T>A
  hgvsp: ENSP00000455744.1:p.Asp58Glu
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-61T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+770T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*28T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1816T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*174T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+770T>A
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24772
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4114
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11603
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11819
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6253
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp58Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/7-42966222-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966222
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966222
    reference: chr 7
allele count: 1
allele frequency: 8.274446853227862e-6
allele num: 120854
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*164T>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+760T>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1826T>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-71T>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.164T>G
  hgvsp: ENSP00000455744.1:p.Ile55Ser
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*18T>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+760T>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.164T>G
  hgvsp: ENSP00000223321.4:p.Ile55Ser
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2218
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4094
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24530
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 840
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1286
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3164
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile55Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD
site quality: ClippingRankSum

7-42966224-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966224
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966224
    reference: chr 7
allele count: 58
allele frequency: 4.799814627848855e-4
allele num: 120838
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*16C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*162C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+758C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+758C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1828C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.162C>T
  hgvsp: ENST00000442788.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.162C>T
  hgvsp: ENST00000223321.4:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-73C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4088
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24476
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2217
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11870
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11642
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser54Ser
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum

7-42966237-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966237
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966237
    reference: chr 7
allele count: 2
allele frequency: 1.658759911090469e-5
allele num: 120572
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*149A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+745A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+745A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1841A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.149A>G
  hgvsp: ENSP00000455744.1:p.Lys50Arg
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.*3A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.149A>G
  hgvsp: ENSP00000223321.4:p.Lys50Arg
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-86A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4047
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 892
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32577
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys50Arg
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP

7-42966245-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966245
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966245
    reference: chr 7
allele count: 5
allele frequency: 4.156690609204576e-5
allele num: 120288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+737A>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+737A>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.141A>C
  hgvsp: ENST00000442788.1:c.141A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-94A>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*141A>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.64A>C
  hgvsp: ENSP00000401954.1:p.Asn22His
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.141A>C
  hgvsp: ENST00000223321.4:c.141A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1849A>C
  variant of: http://identifiers.org/hgnc/9531
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 981
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12052
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 447
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11264
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23681
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Asn22His
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

7-42966270-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966270
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966271
    reference: chr 7
allele count: 34
allele frequency: 3.024534310673048e-4
allele num: 112414
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+711dupT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.119-4dupT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-4dupT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*119-4dupT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.119-4dupT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+711dupT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-4dupT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1875dupT
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 1.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 2.25e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 21173
  bin: 2.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 1.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1254
  bin: 4.25e1
  variant carriers: 3
hgvs: c.119-4dupT
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum

7-42966270-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966270
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966269
    reference: chr 7
allele count: 141
allele frequency: 1.254292170014411e-3
allele num: 112414
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+711delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-4delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*119-4delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-4delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1875delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.119-4delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.119-4delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+711delT
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 9694
  bin: 2.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 21173
  bin: 2.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 1.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 4102
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10257
  bin: 3.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 1488
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 5.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2258
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4548
  bin: 2.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 5271
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 1.75e1
  variant carriers: 27
hgvs: c.119-4delT
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: TA
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

7-42966274-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966274
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966274
    reference: chr 7
allele count: 1
allele frequency: 8.531112968997936e-6
allele num: 117218
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-7T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.119-7T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*119-7T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1878T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+708T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-7T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.119-7T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+708T>A
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22556
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5445
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1740
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5084
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1604
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 3.75e1
  variant carriers: 0
hgvs: c.119-7T>A
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-42966278-AAGAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966278
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966274
    reference: chr 7
allele count: 242
allele frequency: 2.071917808219178e-3
allele num: 116800
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+700_118+703delCTCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-15_-116-12delCTCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+700_82+703delCTCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*119-15_*119-12delCTCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-15_42-12delCTCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.119-15_119-12delCTCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1886_42-1883delCTCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.119-15_119-12delCTCT
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8525
  bin: 3.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10319
  bin: 2.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 21510
  bin: 2.75e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 3.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 5706
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27147
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 3
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: AAGAG
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

7-42966278-AAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966278
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966276
    reference: chr 7
allele count: 16
allele frequency: 1.36986301369863e-4
allele num: 116800
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.119-13_119-12delCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.119-13_119-12delCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+702_82+703delCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-13_-116-12delCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*119-13_*119-12delCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-13_42-12delCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+702_118+703delCT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1884_42-1883delCT
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6588
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21510
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8525
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2870
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10319
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 356
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5567
  bin: 9.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 2128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1916
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: AAG
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-42966284-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966284
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966284
    reference: chr 7
allele count: 4408
allele frequency: 3.80072082636362e-2
allele num: 115978
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-17C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.119-17C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*119-17C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+698C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+698C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1888C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-17C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.119-17C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 3.25e1
  variant carriers: 580
genotype depth: GenotypeDepth
  all individuals: 9721
  bin: 2.25e1
  variant carriers: 779
genotype depth: GenotypeDepth
  all individuals: 2777
  bin: 3.75e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 8482
  bin: 1.25e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 6.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 4.75e1
  variant carriers: 168
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 3370
  bin: 1.75e1
  variant carriers: 521
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 2416
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 9.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 19859
  bin: 2.75e1
  variant carriers: 805
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 5.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 4.25e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 5.25e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 6.25e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 7.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 7.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 9.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 3.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 8554
  bin: 9.75e1
  variant carriers: 4130
genotype quality: GenotypeQuality
  all individuals: 6350
  bin: 6.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 5.25e1
  variant carriers: 13
num of homozygotes: 114
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

7-42966286-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966286
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966286
    reference: chr 7
allele count: 1
allele frequency: 8.665511265164645e-6
allele num: 115400
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1890C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-19C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+696C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.119-19C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.119-19C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+696C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-19C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*119-19C>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9983
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9082
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7653
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7612
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1968
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 546
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum

7-42966290-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966290
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966289
    reference: chr 7
allele count: 19
allele frequency: 1.654014903544815e-4
allele num: 114872
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-24delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+691delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.119-24delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*119-24delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1895delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+691delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-24delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.119-24delT
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 17721
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2492
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7203
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7888
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2863
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11713
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8240
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2662
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: TA
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

7-42966303-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966303
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966303
    reference: chr 7
allele count: 1
allele frequency: 8.836107871204892e-6
allele num: 113172
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.119-36T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-1907T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-36T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+679T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.119-36T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+679T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*119-36T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-36T>C
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6735
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13105
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6247
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8679
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5227
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15452
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-42966938-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966938
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966938
    reference: chr 7
allele count: 1
allele frequency: 8.49314603115286e-6
allele num: 117742
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+44T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*118+44T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.118+44T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+44T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2542T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.118+44T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-671T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-671T>C
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8151
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 676
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17173
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13803
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2944
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2643
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2206
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20095
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

7-42966942-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966942
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966942
    reference: chr 7
allele count: 1
allele frequency: 8.487667419239845e-6
allele num: 117818
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+40G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.118+40G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-675G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*118+40G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.118+40G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2546G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+40G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-675G>A
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1630
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8345
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14217
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4245
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7259
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3081
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1958
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

7-42966949-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966949
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966949
    reference: chr 7
allele count: 8
allele frequency: 6.756756756756757e-5
allele num: 118400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+33G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+33G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-682G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.118+33G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.118+33G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*118+33G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2553G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-682G>A
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8640
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1415
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14952
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23535
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4306
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3138
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1773
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum

7-42966955-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966955
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966955
    reference: chr 7
allele count: 2
allele frequency: 1.679458542565877e-5
allele num: 119086
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*118+27A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.118+27A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+27A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-688A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-688A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+27A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2559A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.118+27A>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3729
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24333
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15595
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8784
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29493
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1778
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7713
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

7-42966959-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966959
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966959
    reference: chr 7
allele count: 1
allele frequency: 8.366800535475235e-6
allele num: 119520
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+23T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-692T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*118+23T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2563T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-692T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.118+23T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.118+23T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+23T>C
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24681
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15957
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 913
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4362
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1349
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

7-42966963-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966963
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966963
    reference: chr 7
allele count: 1
allele frequency: 8.341814177747376e-6
allele num: 119878
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*118+19C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.118+19C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.118+19C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2567C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.82+19C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.118+19C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-696C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-696C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8898
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16119
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25017
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1680
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7812
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1780
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6316
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD

7-42966989-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966989
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966989
    reference: chr 7
allele count: 1
allele frequency: 8.265829062654984e-6
allele num: 120980
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.111A>T
  hgvsp: ENST00000433579.1:c.111A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-722A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2593A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.111A>T
  hgvsp: ENST00000223321.4:c.111A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.111A>T
  hgvsp: ENST00000442788.1:c.111A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*111A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.75A>T
  hgvsp: ENST00000457444.1:c.75A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-722A>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6317
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly37Gly
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-42966992-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966992
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966992
    reference: chr 7
allele count: 1
allele frequency: 8.263097008758882e-6
allele num: 121020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2596G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-725G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.108G>T
  hgvsp: ENST00000433579.1:c.108G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-725G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.108G>T
  hgvsp: ENST00000223321.4:c.108G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.72G>T
  hgvsp: ENST00000457444.1:c.72G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.108G>T
  hgvsp: ENST00000442788.1:c.108G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*108G>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16829
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val36Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ

7-42966994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966994
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966994
    reference: chr 7
allele count: 1
allele frequency: 8.260776182530111e-6
allele num: 121054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2598G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.106G>A
  hgvsp: ENSP00000456999.1:p.Val36Met
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.106G>A
  hgvsp: ENSP00000223321.4:p.Val36Met
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.106G>A
  hgvsp: ENSP00000455744.1:p.Val36Met
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-727G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.70G>A
  hgvsp: ENSP00000414832.1:p.Val24Met
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-727G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*106G>A
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3749
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25517
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4381
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3176
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val36Met
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

7-42966995-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966995
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966995
    reference: chr 7
allele count: 2
allele frequency: 1.651554938975045e-5
allele num: 121098
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.105C>T
  hgvsp: ENST00000433579.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-728C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-728C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.105C>T
  hgvsp: ENST00000223321.4:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.69C>T
  hgvsp: ENST00000457444.1:c.69C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.105C>T
  hgvsp: ENST00000442788.1:c.105C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*105C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2599C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16909
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1782
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser35Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: Other
reference allele: G
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

7-42966999-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42966999
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42966999
    reference: chr 7
allele count: 2
allele frequency: 1.650764303872693e-5
allele num: 121156
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-732C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.101C>T
  hgvsp: ENSP00000223321.4:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2603C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.101C>T
  hgvsp: ENSP00000455744.1:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-732C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.101C>T
  hgvsp: ENSP00000456999.1:p.Pro34Leu
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*101C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.65C>T
  hgvsp: ENSP00000414832.1:p.Pro22Leu
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25500
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8991
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32252
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3135
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro34Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

7-42967016-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967016
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967016
    reference: chr 7
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.48T>C
  hgvsp: ENST00000457444.1:c.48T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.84T>C
  hgvsp: ENST00000442788.1:c.84T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2620T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-749T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.84T>C
  hgvsp: ENST00000223321.4:c.84T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*84T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.84T>C
  hgvsp: ENST00000433579.1:c.84T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-749T>C
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17061
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25452
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8992
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32249
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1783
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala28Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

7-42967055-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967055
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967055
    reference: chr 7
allele count: 15
allele frequency: 1.238175424694171e-4
allele num: 121146
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-788G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-788G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.45G>A
  hgvsp: ENST00000223321.4:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*45G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.45G>A
  hgvsp: ENST00000442788.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000414832
  ensembl transcript: ENST00000457444
  gene symbol: PSMA2
  hgvsc: ENST00000457444.1:c.9G>A
  hgvsp: ENST00000457444.1:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2659G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.45G>A
  hgvsp: ENST00000433579.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17105
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4362
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro15Pro
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

7-42967066-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967066
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967066
    reference: chr 7
allele count: 1
allele frequency: 8.267605866693123e-6
allele num: 120954
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.42-8C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-799C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.42-8C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2670C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*42-8C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-799C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.42-8C>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8970
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6313
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31594
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3095
  bin: 7.25e1
  variant carriers: 0
hgvs: c.42-8C>G
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS

7-42967074-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967074
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967074
    reference: chr 7
allele count: 1
allele frequency: 8.278693953241936e-6
allele num: 120792
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.42-16C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.42-16C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2678C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.42-16C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*42-16C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-807C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-807C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16965
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3087
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30983
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-42967077-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967077
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967077
    reference: chr 7
allele count: 1
allele frequency: 8.282808203293245e-6
allele num: 120732
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.42-19T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-810T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.42-19T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.42-19T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-810T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2681T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*42-19T>C
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23855
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3742
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16910
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8948
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1339
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30625
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ

7-42967078-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967078
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967078
    reference: chr 7
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2682A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-811A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.42-20A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*42-20A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-811A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.42-20A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.42-20A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3740
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23742
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6311
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30468
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 457
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff

7-42967086-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967086
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967086
    reference: chr 7
allele count: 1
allele frequency: 8.29531314807134e-6
allele num: 120550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-819A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.42-28A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.42-28A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2690A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-819A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.42-28A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*42-28A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16507
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8918
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22281
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1523
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4331
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28658
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

7-42967090-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967090
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967090
    reference: chr 7
allele count: 1
allele frequency: 8.30357884248111e-6
allele num: 120430
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.42-32G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.42-32G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*42-32G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2694G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.42-32G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-823G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-823G>A
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8946
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16382
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4299
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27423
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: DP

7-42967091-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967091
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967091
    reference: chr 7
allele count: 1
allele frequency: 8.308960382876895e-6
allele num: 120352
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.42-33T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.42-33T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*42-33T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2695T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-824T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-824T>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.42-33T>C
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8950
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25090
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1752
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum

7-42967094-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967094
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967094
    reference: chr 7
allele count: 5
allele frequency: 4.154825414236094e-5
allele num: 120342
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.42-36A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.42-36A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-827A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.42-36A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2698A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*42-36A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-827A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8831
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3746
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1753
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6308
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/7-42967095-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967095
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967095
    reference: chr 7
allele count: 1
allele frequency: 8.312690152787244e-6
allele num: 120298
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2699G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.42-37G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-828G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.42-37G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-828G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.42-37G>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*42-37G>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3208
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3750
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6307
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 942
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1506
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1889
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25879
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1763
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

7-42967097-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967097
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967097
    reference: chr 7
allele count: 1
allele frequency: 8.313381218409152e-6
allele num: 120288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2701A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-830A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-830A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.42-39A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.42-39A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.42-39A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*42-39A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8774
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3291
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15756
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3735
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7157
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25071
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1775
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS

7-42967109-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967109
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967109
    reference: chr 7
allele count: 1
allele frequency: 8.357989402069439e-6
allele num: 119646
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2713A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-842A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.42-51A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*42-51A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.42-51A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.42-51A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-842A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6393
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3230
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8425
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14479
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3723
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1666
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4055
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1723
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6307
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2015
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14721
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3327
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

7-42967110-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42967110
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42967110
    reference: chr 7
allele count: 1
allele frequency: 8.36372152152822e-6
allele num: 119564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.42-843C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.42-52C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.42-2714C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.42-52C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.42-52C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-116-843C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*42-52C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 707
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 517
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15270
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3125
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4065
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2939
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

7-42970733-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42970733
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42970733
    reference: chr 7
allele count: 12287
allele frequency: 9.976453393959077e-1
allele num: 12316
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.41+984G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.41+984G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-117+984G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.41+984G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.41+984G>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.41+984G>A
  variant of: http://identifiers.org/hgnc/9531
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.25e1
  variant carriers: 461
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 1.25e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 7.5e0
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 802
  bin: 2.75e1
  variant carriers: 802
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 2.5e0
  variant carriers: 643
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 1.75e1
  variant carriers: 204
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 9.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 3.25e1
  variant carriers: 915
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.75e1
  variant carriers: 1037
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 4.75e1
  variant carriers: 657
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 269
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 5.25e1
  variant carriers: 466
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 6.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.25e1
  variant carriers: 938
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 2.25e1
  variant carriers: 58
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 1.25e1
  variant carriers: 236
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 7.25e1
  variant carriers: 112
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 8.75e1
  variant carriers: 204
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 1.75e1
  variant carriers: 210
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 7.75e1
  variant carriers: 271
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 55
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 7.5e0
  variant carriers: 405
num of homozygotes: 6130
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum

7-42970736-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42970736
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42970736
    reference: chr 7
allele count: 1
allele frequency: 8.179290037624735e-5
allele num: 12226
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.41+981A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.41+981A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.41+981A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.41+981A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: stop_retained_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.56A>G
  hgvsp: ENST00000436986.1:c.56A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.41+981A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-117+981A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: false
consequence: stop retained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1587
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1461
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 441
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ter19Ter
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD

7-42970743-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42970743
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42970743
    reference: chr 7
allele count: 2
allele frequency: 1.636661211129296e-4
allele num: 12220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.41+974T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.41+974T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.41+974T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.41+974T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.49T>A
  hgvsp: ENSP00000410750.1:p.Met17Lys
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.41+974T>A
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-117+974T>A
  variant of: http://identifiers.org/hgnc/9531
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1615
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3151
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 436
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met17Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-42970787-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42970787
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42970787
    reference: chr 7
allele count: 1
allele frequency: 8.23045267489712e-5
allele num: 12150
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.41+930C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-117+930C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.41+930C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.41+930C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.38-33C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.41+930C>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.41+930C>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1549
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

7-42970789-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42970789
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42970789
    reference: chr 7
allele count: 1
allele frequency: 8.23045267489712e-5
allele num: 12150
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.41+928A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.41+928A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.41+928A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-117+928A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.41+928A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.41+928A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.38-35A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 358
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

7-42970790-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42970790
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42970790
    reference: chr 7
allele count: 1
allele frequency: 8.239947264337508e-5
allele num: 12136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-117+927C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.41+927C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.41+927C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.41+927C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.41+927C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.41+927C>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.38-36C>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

7-42970799-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42970799
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42970799
    reference: chr 7
allele count: 2
allele frequency: 1.658374792703151e-4
allele num: 12060
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.41+918A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.41+918A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.41+918A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.41+918A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.38-45A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.41+918A>T
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-117+918A>T
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2058
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1241
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1486
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 597
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

7-42971669-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42971669
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42971669
    reference: chr 7
allele count: 1
allele frequency: 8.257774694875225e-6
allele num: 121098
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.41+48A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.41+48A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-117+48A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.41+48A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.37+48A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.41+48A>G
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.41+48A>G
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3124
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6412
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2569
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1843
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

7-42971672-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42971672
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42971672
    reference: chr 7
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.41+45G>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.41+45G>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.37+45G>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.41+45G>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-117+45G>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.41+45G>C
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.41+45G>C
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 852
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3121
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4189
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5235
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5233
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6412
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2328
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2619
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-42971675-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 42971675
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 42971674
    reference: chr 7
allele count: 1
allele frequency: 8.257638315441784e-6
allele num: 121100
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000455744
  ensembl transcript: ENST00000442788
  gene symbol: PSMA2
  hgvsc: ENST00000442788.1:c.41+41delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000223321
  ensembl transcript: ENST00000223321
  gene symbol: PSMA2
  hgvsc: ENST00000223321.4:c.41+41delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000440009
  ensembl transcript: ENST00000538645
  gene symbol: PSMA2
  hgvsc: ENST00000538645.1:c.-117+41delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000410750
  ensembl transcript: ENST00000436986
  gene symbol: PSMA2
  hgvsc: ENST00000436986.1:c.37+41delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000256646
  ensembl protein: ENSP00000456999
  ensembl transcript: ENST00000433579
  gene symbol: PSMA2
  hgvsc: ENST00000433579.1:c.41+41delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000404858
  ensembl transcript: ENST00000445517
  gene symbol: PSMA2
  hgvsc: ENST00000445517.1:c.41+41delT
  variant of: http://identifiers.org/hgnc/9531
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106588
  ensembl protein: ENSP00000401954
  ensembl transcript: ENST00000411875
  gene symbol: PSMA2
  hgvsc: ENST00000411875.1:c.41+41delT
  variant of: http://identifiers.org/hgnc/9531
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4312
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6208
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2716
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1608
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5236
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5232
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5910
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3123
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6412
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4365
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47052
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
reference allele: CA

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6346
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1013
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4013
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1572
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 505
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 403
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 634
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1675
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65144
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.80126738250308e-5
allele num: 11362
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8442
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10228
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.0e-2

FS
type: SiteQuality
SIO_000300: 6.769e0

DP
type: SiteQuality
SIO_000300: 1.671042e6

QD
type: SiteQuality
SIO_000300: 1.524e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.04e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.24e-1

GenotypeQuality
all individuals: 1886
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5356
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 148
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2556
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2680
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3682
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25781
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.539930395146139e-5
allele num: 64938
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11348
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.37e0

DP
type: SiteQuality
SIO_000300: 1.610213e6

FS
type: SiteQuality
SIO_000300: 8.855e0

QD
type: SiteQuality
SIO_000300: 2.503e1

MQ
type: SiteQuality
SIO_000300: 5.948e1

MQRankSum
type: SiteQuality
SIO_000300: 6.53e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.474e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.676e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5364
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1612
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545165178157545e-5
allele num: 64718
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15398
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10194
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11322
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

QD
type: SiteQuality
SIO_000300: 5.57e0

VQSLOD
type: SiteQuality
SIO_000300: -1.747e0

MQRankSum
type: SiteQuality
SIO_000300: -2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.27e-1

FS
type: SiteQuality
SIO_000300: 1.0234e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.34e-1

DP
type: SiteQuality
SIO_000300: 1.566905e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 28316
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GenotypeQuality
all individuals: 1000
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65380
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.68e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.764e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.39e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

FS
type: SiteQuality
SIO_000300: 8.090000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.53e-1

MQ
type: SiteQuality
SIO_000300: 5.902e1

QD
type: SiteQuality
SIO_000300: 1.638e1

DP
type: SiteQuality
SIO_000300: 1.882525e6

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 19

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.140934670907756e-4
allele num: 65392
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.613240418118467e-4
allele num: 11480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.472320376914016e-4
allele num: 13584
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

MQ
type: SiteQuality
SIO_000300: 5.968e1

VQSLOD
type: SiteQuality
SIO_000300: 4.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.7e0

MQRankSum
type: SiteQuality
SIO_000300: 3.07e-1

QD
type: SiteQuality
SIO_000300: 1.259e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.03e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

FS
type: SiteQuality
SIO_000300: 6.02e-1

DP
type: SiteQuality
SIO_000300: 1.884517e6

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 26

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 3588
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528677999266235e-5
allele num: 65416
num of homozygotes: 0

East Asian
type: Population
allele count: 23
allele frequency: 2.662653391988886e-3
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.347538574577516e-5
allele num: 13610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.712319219376198e-5
allele num: 11478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.37e0

DP
type: SiteQuality
SIO_000300: 1.885881e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.517e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

FS
type: SiteQuality
SIO_000300: 1.231e0

QD
type: SiteQuality
SIO_000300: 1.158e1

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 143
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528304193666707e-5
allele num: 65432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.172e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -1.537e0

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.887134e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.855e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.973e0

FS
type: SiteQuality
SIO_000300: 2.777e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.526158354190831e-5
allele num: 65524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13996
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11484
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.1e0

BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.913e0

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e-2

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

DP
type: SiteQuality
SIO_000300: 1.894996e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.707767328456984e-5
allele num: 11484
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524808636516117e-5
allele num: 65582
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.185e0

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.898881e6

MQRankSum
type: SiteQuality
SIO_000300: 7.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11486
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.570662441343165e-5
allele num: 65636
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14316
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8644
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QD
type: SiteQuality
SIO_000300: 1.359e1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.523e0

MQRankSum
type: SiteQuality
SIO_000300: 8.36e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 484
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GenotypeQuality
all individuals: 60
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.859651529702291e-5
allele num: 14578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65762
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.91e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

DP
type: SiteQuality
SIO_000300: 1.908833e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6309
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GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.63948332369385e-5
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65762
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.91e-1

DP
type: SiteQuality
SIO_000300: 1.908833e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.08e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.81e0

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 8

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 4.807692307692308e-4
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.737619461337967e-4
allele num: 11510
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15866
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507249871883761e-5
allele num: 66346
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.935652e6

QD
type: SiteQuality
SIO_000300: 1.235e1

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 104
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2300
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3612
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.688097306689835e-5
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.28e-1

DP
type: SiteQuality
SIO_000300: 1.935652e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.56e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.99e-1

QD
type: SiteQuality
SIO_000300: 1.235e1

MQ
type: SiteQuality
SIO_000300: 5.966e1

GenotypeQuality
all individuals: 63
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2306
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.012411133871551e-5
allele num: 66392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15958
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.334e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.44e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.53e-1

DP
type: SiteQuality
SIO_000300: 1.93654e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.349e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 46
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6300
bin: 9.75e1
variant carriers: 12

GenotypeQuality
all individuals: 3277
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 7.502813555083156e-4
allele num: 15994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66414
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.05e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.33e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.65e0

MQRankSum
type: SiteQuality
SIO_000300: 4.51e-1

DP
type: SiteQuality
SIO_000300: 1.937339e6

QD
type: SiteQuality
SIO_000300: 1.304e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 999
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502133028901039e-5
allele num: 66572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.923076923076923e-4
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.022e1

FS
type: SiteQuality
SIO_000300: 1.538e0

DP
type: SiteQuality
SIO_000300: 1.943601e6

VQSLOD
type: SiteQuality
SIO_000300: 9.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.645e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.66e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 27
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GenotypeQuality
all individuals: 172
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500780405811022e-5
allele num: 66632
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.585e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -5.02e-1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3565
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66634
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.943619e6

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.65e0

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

GenotypeQuality
all individuals: 192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 36
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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allele count: 3
allele frequency: 1.819725827975252e-4
allele num: 16486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66628
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.865e0

ClippingRankSum
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SIO_000300: 1.1e-2

BaseQRankSum
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SIO_000300: 2.67e0

DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.067961165048543e-5
allele num: 16480
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66578
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MQRankSum
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SIO_000300: -2.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.56e-1

DP
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.637e0

VQSLOD
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ReadPosRankSum
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SIO_000300: -3.03e-1

MQ
type: SiteQuality
SIO_000300: 5.836e1

QD
type: SiteQuality
SIO_000300: 1.233e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11474
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502403846153846e-5
allele num: 66560
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.3e-1

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.528e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.34e0

VQSLOD
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DP
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MQRankSum
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SIO_000300: 1.29e0

MQ
type: SiteQuality
SIO_000300: 5.968e1

QD
type: SiteQuality
SIO_000300: 1.255e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.035454103933948e-4
allele num: 16472
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.7e-1

InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.51e0

QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.946e-1

DP
type: SiteQuality
SIO_000300: 1.933383e6

MQ
type: SiteQuality
SIO_000300: 5.963e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16460
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.16144018583043e-4
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66444
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 7.4e-1

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 5.10597302504817e-3
allele num: 10380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
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num of homozygotes: 0

Latino
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allele frequency: 3.493449781659388e-4
allele num: 11450
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505253334136135e-5
allele num: 66434
num of homozygotes: 0

South Asian
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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FS
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InbreedingCoeff
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DP
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MQ
type: SiteQuality
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ClippingRankSum
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VQSLOD
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QD
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.017956843217142e-5
allele num: 66270
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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African
type: Population
allele count: 0
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Other
type: Population
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
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MQRankSum
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QD
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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East Asian
type: Population
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Latino
type: Population
allele count: 0
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African
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele frequency: 3.060350104051903e-4
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InbreedingCoeff
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MQRankSum
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QD
type: SiteQuality
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ClippingRankSum
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VQSLOD
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MQ
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BaseQRankSum
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FS
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1990
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variant carriers: 6

Latino
type: Population
allele count: 4
allele frequency: 3.694126339120798e-4
allele num: 10828
num of homozygotes: 0

East Asian
type: Population
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African
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European (Finnish)
type: Population
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allele frequency: 1.540832049306626e-4
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European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.743528500419598e-4
allele num: 61964
num of homozygotes: 0

South Asian
type: Population
allele count: 12
allele frequency: 8.559201141226819e-4
allele num: 14020
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

QD
type: SiteQuality
SIO_000300: 3.8e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 9.24e-1

DP
type: SiteQuality
SIO_000300: 1.828962e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

GenotypeQuality
all individuals: 23750
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 1580
bin: 3.75e1
variant carriers: 22

GenotypeQuality
all individuals: 671
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 880
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1917
bin: 2.75e1
variant carriers: 27

GenotypeQuality
all individuals: 1327
bin: 2.5e0
variant carriers: 15

GenotypeQuality
all individuals: 1990
bin: 3.25e1
variant carriers: 13

GenotypeQuality
all individuals: 620
bin: 1.25e1
variant carriers: 23

GenotypeQuality
all individuals: 6655
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1342
bin: 4.75e1
variant carriers: 13

GenotypeQuality
all individuals: 1254
bin: 4.25e1
variant carriers: 13

GenotypeQuality
all individuals: 2108
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 676
bin: 7.5e0
variant carriers: 25

GenotypeQuality
all individuals: 711
bin: 5.75e1
variant carriers: 4

European (Non-Finnish)
type: Population
allele count: 84
allele frequency: 1.355625847266155e-3
allele num: 61964
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 7.388252678241596e-4
allele num: 10828
num of homozygotes: 0

African
type: Population
allele count: 9
allele frequency: 8.932115919015483e-4
allele num: 10076
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.386634844868735e-3
allele num: 838
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 9.758477677482313e-4
allele num: 8198
num of homozygotes: 0

South Asian
type: Population
allele count: 30
allele frequency: 2.139800285306705e-3
allele num: 14020
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 7.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

DP
type: SiteQuality
SIO_000300: 1.828962e6

MQRankSum
type: SiteQuality
SIO_000300: 3.91e-1

FS
type: SiteQuality
SIO_000300: 9.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -6.29e-1

QD
type: SiteQuality
SIO_000300: 3.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

GenotypeQuality
all individuals: 435
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5337
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7480
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2406
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 686
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2239
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64582
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.798157946306095e-5
allele num: 10206
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11276
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15280
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.101e1

FS
type: SiteQuality
SIO_000300: 4.893e0

DP
type: SiteQuality
SIO_000300: 1.745853e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.139999999999999e-1

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5567
bin: 9.75e1
variant carriers: 229

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2128
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1165
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2198
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 603
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2377
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 356
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7224
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 8.75e1
variant carriers: 1

East Asian
type: Population
allele count: 239
allele frequency: 2.843883864826273e-2
allele num: 8404
num of homozygotes: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10186
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.979414093428345e-4
allele num: 15156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64372
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.484e0

QD
type: SiteQuality
SIO_000300: 1.024e1

DP
type: SiteQuality
SIO_000300: 1.721248e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.01e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

MQ
type: SiteQuality
SIO_000300: 5.796e1

GenotypeQuality
all individuals: 442
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5706
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27147
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2377
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7224
bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.189909566872918e-4
allele num: 8404
num of homozygotes: 0

African
type: Population
allele count: 13
allele frequency: 1.276261535440801e-3
allele num: 10186
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15156
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.777145903678692e-4
allele num: 11254
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.796e1

DP
type: SiteQuality
SIO_000300: 1.721248e6

VQSLOD
type: SiteQuality
SIO_000300: 1.45e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.52e-1

FS
type: SiteQuality
SIO_000300: 4.484e0

QD
type: SiteQuality
SIO_000300: 1.024e1

MQRankSum
type: SiteQuality
SIO_000300: -2.69e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.01e-2

GenotypeQuality
all individuals: 66
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 365
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 54
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 24163
bin: 6.25e1
variant carriers: 12

GenotypeQuality
all individuals: 463
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 6605
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 1900
bin: 7.25e1
variant carriers: 14

GenotypeQuality
all individuals: 2006
bin: 7.75e1
variant carriers: 26

GenotypeQuality
all individuals: 2215
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1417
bin: 3.75e1
variant carriers: 9

GenotypeQuality
all individuals: 410
bin: 5.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1292
bin: 8.25e1
variant carriers: 18

GenotypeQuality
all individuals: 560
bin: 8.75e1
variant carriers: 21

Latino
type: Population
allele count: 148
allele frequency: 1.320485367594575e-2
allele num: 11208
num of homozygotes: 0

African
type: Population
allele count: 79
allele frequency: 7.801698597669366e-3
allele num: 10126
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 408
allele frequency: 6.242350061199511e-2
allele num: 6536
num of homozygotes: 12

South Asian
type: Population
allele count: 94
allele frequency: 6.276709401709402e-3
allele num: 14976
num of homozygotes: 1

Other
type: Population
allele count: 26
allele frequency: 2.96127562642369e-2
allele num: 878
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3653
allele frequency: 5.714956195244055e-2
allele num: 63920
num of homozygotes: 101

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8334
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.364e0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.72e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

QD
type: SiteQuality
SIO_000300: 1.32e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.183e0

DP
type: SiteQuality
SIO_000300: 1.677717e6

GenotypeQuality
all individuals: 28
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1831
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6674
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3374
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4739
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2668
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2076
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6532
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8328
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.900990099009902e-5
allele num: 10100
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11176
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.24e-1

DP
type: SiteQuality
SIO_000300: 1.617275e6

FS
type: SiteQuality
SIO_000300: 4.603e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.43e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

QD
type: SiteQuality
SIO_000300: 1.86e1

VQSLOD
type: SiteQuality
SIO_000300: -7.978e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.53e-1

GenotypeQuality
all individuals: 4384
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 667
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1917
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4757
bin: 9.75e1
variant carriers: 19

GenotypeQuality
all individuals: 795
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21119
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2028
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6520
num of homozygotes: 0

African
type: Population
allele count: 17
allele frequency: 1.688853566461355e-3
allele num: 10066
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63192
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.792435920415845e-4
allele num: 11158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14748
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8320
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 5.4e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.0e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e-1

DP
type: SiteQuality
SIO_000300: 1.57268e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.599999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.64e-1

QD
type: SiteQuality
SIO_000300: 1.237e1

GenotypeQuality
all individuals: 3796
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1785
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4737
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 370
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1915
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4505
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11082
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62334
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8242
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.044237813468582e-5
allele num: 14196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.53e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

VQSLOD
type: SiteQuality
SIO_000300: -2.06e-1

DP
type: SiteQuality
SIO_000300: 1.467264e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.02e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.277e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
all individuals: 7100
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1499
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2698
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1753
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3076
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4230
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1322
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 1.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16128
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6522
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9904
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8384
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.548802775454574e-5
allele num: 64566
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
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MQRankSum
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SIO_000300: 7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
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VQSLOD
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SIO_000300: -2.511e0

ClippingRankSum
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SIO_000300: 1.21e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.134e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9918
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 64620
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.190759704691593e-4
allele num: 8398
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.628522e6

ClippingRankSum
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QD
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 3.1e-3

FS
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BaseQRankSum
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MQRankSum
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SIO_000300: -8.699999999999999e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.92e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11378
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

East Asian
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allele count: 8
allele frequency: 9.449562957713206e-4
allele num: 8466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.670227e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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SIO_000300: -3.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.73e-1

ReadPosRankSum
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SIO_000300: 3.32e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-3

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.72e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11416
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16302
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.063443923658977e-5
allele num: 65286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

DP
type: SiteQuality
SIO_000300: 1.690505e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.26e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.91e-1

QD
type: SiteQuality
SIO_000300: 1.326e1

FS
type: SiteQuality
SIO_000300: 5.804e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.163873370577281e-4
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.371e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

DP
type: SiteQuality
SIO_000300: 1.701496e6

MQ
type: SiteQuality
SIO_000300: 5.957e1

QD
type: SiteQuality
SIO_000300: 1.521e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11434
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.520542529574552e-5
allele num: 65766
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.934e1

FS
type: SiteQuality
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MQRankSum
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.02e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10324
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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DP
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VQSLOD
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QD
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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BaseQRankSum
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FS
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MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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African
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East Asian
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Latino
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Other
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num of homozygotes: 0

European (Non-Finnish)
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allele num: 66524
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DP
type: SiteQuality
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QD
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ReadPosRankSum
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FS
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele num: 66540
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Other
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European (Finnish)
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African
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allele frequency: 9.678668215253581e-5
allele num: 10332
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Latino
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ReadPosRankSum
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QD
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ClippingRankSum
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BaseQRankSum
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DP
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MQ
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InbreedingCoeff
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004446580939791e-5
allele num: 66568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.14e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.75e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.47e-1

DP
type: SiteQuality
SIO_000300: 1.730179e6

MQRankSum
type: SiteQuality
SIO_000300: 3.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.15e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501321162623108e-5
allele num: 66608
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16508
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FS
type: SiteQuality
SIO_000300: 5.55e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
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QD
type: SiteQuality
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

DP
type: SiteQuality
SIO_000300: 1.730949e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10348
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.45e-1

VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.979e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.75e-1

FS
type: SiteQuality
SIO_000300: 2.063e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.66e-1

QD
type: SiteQuality
SIO_000300: 6.99e0

DP
type: SiteQuality
SIO_000300: 1.732012e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 15

South Asian
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allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10334
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 14
allele frequency: 1.212541139788671e-3
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

FS
type: SiteQuality
SIO_000300: 2.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.43e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.31e-1

DP
type: SiteQuality
SIO_000300: 1.730628e6

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.126e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.667013347200555e-5
allele num: 11538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66452
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

MQ
type: SiteQuality
SIO_000300: 5.867e1

VQSLOD
type: SiteQuality
SIO_000300: -4.555e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.9e-2

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.578e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-3

DP
type: SiteQuality
SIO_000300: 1.724332e6

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 16492
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East Asian
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allele count: 0
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African
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Other
type: Population
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ClippingRankSum
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SIO_000300: 2.04e-1

FS
type: SiteQuality
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QD
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DP
type: SiteQuality
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66304
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Latino
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10280
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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FS
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QD
type: SiteQuality
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DP
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MQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.508659706716553e-5
allele num: 66284
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
type: Population
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East Asian
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QD
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FS
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BaseQRankSum
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ReadPosRankSum
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MQRankSum
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VQSLOD
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ClippingRankSum
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DP
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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African
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East Asian
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European (Finnish)
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South Asian
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Other
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InbreedingCoeff
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BaseQRankSum
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MQ
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VQSLOD
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FS
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7485
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 9.775171065493646e-5
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66108
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

QD
type: SiteQuality
SIO_000300: 1.283e1

FS
type: SiteQuality
SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.687709e6

GenotypeQuality
all individuals: 51
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1508
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7216
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6308
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 930
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3003
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4283
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3143
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.807767752059631e-5
allele num: 10196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66080
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.2e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.43e0

FS
type: SiteQuality
SIO_000300: 2.753e0

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.676715e6

QD
type: SiteQuality
SIO_000300: 1.204e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.58e-1

GenotypeQuality
all individuals: 3003
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 524
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7213
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4280
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3140
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1882
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 7.569105937206697e-5
allele num: 66058
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16466
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8616
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.675056e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.63e0

FS
type: SiteQuality
SIO_000300: 9.44e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.0e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.8e-1

QD
type: SiteQuality
SIO_000300: 1.43e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

GenotypeQuality
all individuals: 43
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7180
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3138
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1775
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1336
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514279657167086e-5
allele num: 66038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.423e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.907e1

QD
type: SiteQuality
SIO_000300: 1.144e1

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

DP
type: SiteQuality
SIO_000300: 1.675363e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.461e0

VQSLOD
type: SiteQuality
SIO_000300: 2.06e-1

GenotypeQuality
all individuals: 61
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1012
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 291
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4283
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6307
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2988
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1919
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3138
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-5
allele num: 66040
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10170
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.668385e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.24e0

MQRankSum
type: SiteQuality
SIO_000300: 2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.37e1

VQSLOD
type: SiteQuality
SIO_000300: -8.68e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.826e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 3302
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1192
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1026
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2494
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6577
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 305
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4238
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.09979260705136e-5
allele num: 16394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.645772e6

MQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 3.41e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

VQSLOD
type: SiteQuality
SIO_000300: -2.567e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.661e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.72e-1

GenotypeQuality
all individuals: 1188
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1335
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2029
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4234
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 557
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2493
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6549
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6306
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1751
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16384
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65608
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.946290033817386e-5
allele num: 10054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

DP
type: SiteQuality
SIO_000300: 1.646114e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.3e-1

QD
type: SiteQuality
SIO_000300: 1.466e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.535e0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 14

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 87

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 30

GenotypeQuality
all individuals: 200
bin: 6.75e1
variant carriers: 200

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 68

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 25

GenotypeQuality
all individuals: 4238
bin: 9.75e1
variant carriers: 4237

GenotypeQuality
all individuals: 327
bin: 8.25e1
variant carriers: 327

GenotypeQuality
all individuals: 153
bin: 6.25e1
variant carriers: 153

GenotypeQuality
all individuals: 364
bin: 9.25e1
variant carriers: 364

South Asian
type: Population
allele count: 7611
allele frequency: 9.998686284813453e-1
allele num: 7612
num of homozygotes: 3805

European (Non-Finnish)
type: Population
allele count: 3619
allele frequency: 9.997237569060774e-1
allele num: 3620
num of homozygotes: 1809

African
type: Population
allele count: 535
allele frequency: 9.519572953736655e-1
allele num: 562
num of homozygotes: 255

Latino
type: Population
allele count: 188
allele frequency: 1.0e0
allele num: 188
num of homozygotes: 94

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.0e0
allele num: 4
num of homozygotes: 2

East Asian
type: Population
allele count: 198
allele frequency: 1.0e0
allele num: 198
num of homozygotes: 99

Other
type: Population
allele count: 132
allele frequency: 1.0e0
allele num: 132
num of homozygotes: 66

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.4e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.3e0

FS
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.697e-1

QD
type: SiteQuality
SIO_000300: 3.201e1

DP
type: SiteQuality
SIO_000300: 2.42657e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.58e0

GenotypeQuality
all individuals: 272
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3073
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.801120448179272e-4
allele num: 3570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

QD
type: SiteQuality
SIO_000300: 8.130000000000001e0

FS
type: SiteQuality
SIO_000300: 1.3546e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.81e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.900000000000001e-2

DP
type: SiteQuality
SIO_000300: 1.80313e5

MQ
type: SiteQuality
SIO_000300: 5.956e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.4e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.46e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.921e0

GenotypeQuality
all individuals: 85
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 256
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 1.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.642007926023778e-4
allele num: 7570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.19e0

FS
type: SiteQuality
SIO_000300: 1.317e0

DP
type: SiteQuality
SIO_000300: 1.80065e5

MQRankSum
type: SiteQuality
SIO_000300: -7.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.07e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.25e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.769e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.8e-1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3534
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.326611833377554e-4
allele num: 7538
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.169e0

DP
type: SiteQuality
SIO_000300: 1.67462e5

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.93e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

FS
type: SiteQuality
SIO_000300: 9.234e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.81e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.177e0

QD
type: SiteQuality
SIO_000300: 1.29e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.62e-1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 5.319148936170213e-3
allele num: 188
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.525e0

DP
type: SiteQuality
SIO_000300: 1.65637e5

FS
type: SiteQuality
SIO_000300: 1.48e0

VQSLOD
type: SiteQuality
SIO_000300: -3.648e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.624e0

QD
type: SiteQuality
SIO_000300: 9.890000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.98e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.74e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 211
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.8328611898017e-4
allele num: 3530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-2

DP
type: SiteQuality
SIO_000300: 1.65579e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.05e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.153e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.69e0

FS
type: SiteQuality
SIO_000300: 2.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e-1

GenotypeQuality
all individuals: 362
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 398
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 288
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
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variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 188
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 558
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.671653753673524e-4
allele num: 7486
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

FS
type: SiteQuality
SIO_000300: 1.817e0

QD
type: SiteQuality
SIO_000300: 1.08e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.29e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.26e-2

DP
type: SiteQuality
SIO_000300: 1.55634e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.12e-1

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1809
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 202
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variant carriers: 0

GenotypeQuality
all individuals: 17
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variant carriers: 0

GenotypeQuality
all individuals: 1960
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variant carriers: 0

GenotypeQuality
all individuals: 975
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 47054
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66480
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.52e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.291e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.87e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: -1.187e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

DP
type: SiteQuality
SIO_000300: 3.713973e6

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1860
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157139551029854e-4
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66484
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 1.858e0

MQRankSum
type: SiteQuality
SIO_000300: -1.98e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.737e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -7.06e-1

QD
type: SiteQuality
SIO_000300: 1.078e1

DP
type: SiteQuality
SIO_000300: 3.713951e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1955
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2674
bin: 6.25e1
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GenotypeQuality
all individuals: 964
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 40
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0