5-115803326-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803326
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803326
    reference: chr 5
allele count: 2
allele frequency: 1.682283868579984e-5
allele num: 118886
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17813G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.128C>A
  hgvsp: ENSP00000422997.1:p.Thr43Lys
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1898C>A
  hgvsp: ENSP00000257414.8:p.Thr633Lys
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5443C>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17813G>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3561G>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1847C>A
  hgvsp: ENSP00000345512.6:p.Thr616Lys
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1847C>A
  hgvsp: ENSP00000424388.1:p.Thr616Lys
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17813G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5443C>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.578C>A
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1208
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 39192
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr616Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

5-115803345-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803345
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803345
    reference: chr 5
allele count: 1
allele frequency: 8.384056877441857e-6
allele num: 119274
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17832G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1879C>G
  hgvsp: ENSP00000257414.8:p.Leu627Val
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1828C>G
  hgvsp: ENSP00000424388.1:p.Leu610Val
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1828C>G
  hgvsp: ENSP00000345512.6:p.Leu610Val
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5424C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.109C>G
  hgvsp: ENSP00000422997.1:p.Leu37Val
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3542G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17832G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17832G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.559C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5424C>G
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38808
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu610Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-115803355-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803355
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803355
    reference: chr 5
allele count: 2
allele frequency: 1.67467720596855e-5
allele num: 119426
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3532C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5414G>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.549G>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17842C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.99G>C
  hgvsp: ENSP00000422997.1:p.Trp33Cys
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1869G>C
  hgvsp: ENSP00000257414.8:p.Trp623Cys
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1818G>C
  hgvsp: ENSP00000424388.1:p.Trp606Cys
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17842C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5414G>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17842C>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1818G>C
  hgvsp: ENSP00000345512.6:p.Trp606Cys
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2477
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3606
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Trp606Cys
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-115803357-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803357
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803357
    reference: chr 5
allele count: 1
allele frequency: 8.368621018628551e-6
allele num: 119494
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.97T>C
  hgvsp: ENSP00000422997.1:p.Trp33Arg
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1867T>C
  hgvsp: ENSP00000257414.8:p.Trp623Arg
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.547T>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1816T>C
  hgvsp: ENSP00000345512.6:p.Trp606Arg
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17844A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5412T>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5412T>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17844A>G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3530A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1816T>C
  hgvsp: ENSP00000424388.1:p.Trp606Arg
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17844A>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2455
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 928
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38837
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Trp606Arg
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

5-115803358-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803358
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803358
    reference: chr 5
allele count: 1
allele frequency: 8.368761088608442e-6
allele num: 119492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17845G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1815C>T
  hgvsp: ENST00000510263.1:c.1815C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1815C>T
  hgvsp: ENST00000343348.6:c.1815C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5411C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.96C>T
  hgvsp: ENST00000513137.1:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1866C>T
  hgvsp: ENST00000257414.8:c.1866C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3529G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.546C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17845G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5411C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17845G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13472
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2465
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp605Asp
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/5-115803361-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803361
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803361
    reference: chr 5
allele count: 1
allele frequency: 8.367360599772408e-6
allele num: 119512
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17848C>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1812G>T
  hgvsp: ENST00000343348.6:c.1812G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1812G>T
  hgvsp: ENST00000510263.1:c.1812G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3526C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17848C>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1863G>T
  hgvsp: ENST00000257414.8:c.1863G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17848C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.543G>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5408G>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.93G>T
  hgvsp: ENST00000513137.1:c.93G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5408G>T
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38741
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 571
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Leu604Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD

5-115803367-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803367
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803367
    reference: chr 5
allele count: 2
allele frequency: 1.672156915204923e-5
allele num: 119606
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1806A>T
  hgvsp: ENST00000343348.6:c.1806A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17854T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5402A>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.87A>T
  hgvsp: ENST00000513137.1:c.87A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1857A>T
  hgvsp: ENST00000257414.8:c.1857A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17854T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17854T>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1806A>T
  hgvsp: ENST00000510263.1:c.1806A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.537A>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5402A>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3520T>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13731
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 747
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 855
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2488
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38806
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly602Gly
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/5-115803374-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803374
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803374
    reference: chr 5
allele count: 2
allele frequency: 1.672017121455324e-5
allele num: 119616
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.80G>T
  hgvsp: ENSP00000422997.1:p.Arg27Met
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3513C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.530G>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5395G>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1799G>T
  hgvsp: ENSP00000424388.1:p.Arg600Met
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17861C>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1799G>T
  hgvsp: ENSP00000345512.6:p.Arg600Met
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1850G>T
  hgvsp: ENSP00000257414.8:p.Arg617Met
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17861C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5395G>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17861C>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38737
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13885
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2503
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg600Met
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP

5-115803381-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803381
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803381
    reference: chr 5
allele count: 1
allele frequency: 8.358967500334358e-6
allele num: 119632
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17868C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.523G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17868C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.73G>A
  hgvsp: ENSP00000422997.1:p.Glu25Lys
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1792G>A
  hgvsp: ENSP00000345512.6:p.Glu598Lys
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17868C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1792G>A
  hgvsp: ENSP00000424388.1:p.Glu598Lys
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3506C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5388G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1843G>A
  hgvsp: ENSP00000257414.8:p.Glu615Lys
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5388G>A
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu598Lys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/5-115803385-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803385
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803385
    reference: chr 5
allele count: 1
allele frequency: 8.365120792344242e-6
allele num: 119544
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1788G>T
  hgvsp: ENST00000343348.6:c.1788G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.69G>T
  hgvsp: ENST00000513137.1:c.69G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5384G>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17872C>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3502C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.519G>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1839G>T
  hgvsp: ENST00000257414.8:c.1839G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17872C>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1788G>T
  hgvsp: ENST00000510263.1:c.1788G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17872C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5384G>T
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly596Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

5-115803386-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803386
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803386
    reference: chr 5
allele count: 1
allele frequency: 8.369741709770836e-6
allele num: 119478
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5383G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.68G>A
  hgvsp: ENSP00000422997.1:p.Gly23Glu
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17873C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5383G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1787G>A
  hgvsp: ENSP00000345512.6:p.Gly596Glu
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17873C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1838G>A
  hgvsp: ENSP00000257414.8:p.Gly613Glu
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.518G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1787G>A
  hgvsp: ENSP00000424388.1:p.Gly596Glu
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17873C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3501C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly596Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/5-115803386-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803386
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803386
    reference: chr 5
allele count: 1
allele frequency: 8.369741709770836e-6
allele num: 119478
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17873C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5383G>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1838G>T
  hgvsp: ENSP00000257414.8:p.Gly613Val
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1787G>T
  hgvsp: ENSP00000345512.6:p.Gly596Val
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1787G>T
  hgvsp: ENSP00000424388.1:p.Gly596Val
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17873C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.518G>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.68G>T
  hgvsp: ENSP00000422997.1:p.Gly23Val
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3501C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17873C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5383G>T
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly596Val
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

5-115803387-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803387
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803387
    reference: chr 5
allele count: 1
allele frequency: 8.369321415419637e-6
allele num: 119484
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1786G>A
  hgvsp: ENSP00000345512.6:p.Gly596Arg
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.67G>A
  hgvsp: ENSP00000422997.1:p.Gly23Arg
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1786G>A
  hgvsp: ENSP00000424388.1:p.Gly596Arg
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1837G>A
  hgvsp: ENSP00000257414.8:p.Gly613Arg
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5382G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17874C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17874C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.517G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17874C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3500C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5382G>A
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38362
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly596Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ

5-115803397-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803397
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803397
    reference: chr 5
allele count: 3
allele frequency: 2.513699663164245e-5
allele num: 119346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1827G>A
  hgvsp: ENST00000257414.8:c.1827G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1776G>A
  hgvsp: ENST00000510263.1:c.1776G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.57G>A
  hgvsp: ENST00000513137.1:c.57G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5372G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17884C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1776G>A
  hgvsp: ENST00000343348.6:c.1776G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5372G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.507G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17884C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17884C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3490C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14192
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Thr592Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

5-115803398-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803398
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803398
    reference: chr 5
allele count: 1
allele frequency: 8.381105635455429e-6
allele num: 119316
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1775C>T
  hgvsp: ENSP00000424388.1:p.Thr592Met
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5371C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17885G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.506C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1826C>T
  hgvsp: ENSP00000257414.8:p.Thr609Met
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17885G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3489G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5371C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17885G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.56C>T
  hgvsp: ENSP00000422997.1:p.Thr19Met
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1775C>T
  hgvsp: ENSP00000345512.6:p.Thr592Met
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38139
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14182
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr592Met
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD

5-115803400-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803400
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803400
    reference: chr 5
allele count: 3
allele frequency: 2.51454243709453e-5
allele num: 119306
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.504G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1773G>A
  hgvsp: ENST00000343348.6:c.1773G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3487C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17887C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1824G>A
  hgvsp: ENST00000257414.8:c.1824G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5369G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.54G>A
  hgvsp: ENST00000513137.1:c.54G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1773G>A
  hgvsp: ENST00000510263.1:c.1773G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17887C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5369G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17887C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2538
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14180
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser591Ser
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

5-115803401-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803401
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803401
    reference: chr 5
allele count: 3
allele frequency: 2.515259239385606e-5
allele num: 119272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.503C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5368C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5368C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1823C>T
  hgvsp: ENSP00000257414.8:p.Ser608Leu
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17888G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17888G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1772C>T
  hgvsp: ENSP00000424388.1:p.Ser591Leu
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.53C>T
  hgvsp: ENSP00000422997.1:p.Ser18Leu
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1772C>T
  hgvsp: ENSP00000345512.6:p.Ser591Leu
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17888G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3486G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2530
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 568
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 865
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser591Leu
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/5-115803402-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803402
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803402
    reference: chr 5
allele count: 1
allele frequency: 8.382510729613734e-6
allele num: 119296
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17889A>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3485A>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1771T>G
  hgvsp: ENSP00000345512.6:p.Ser591Ala
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.52T>G
  hgvsp: ENSP00000422997.1:p.Ser18Ala
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1822T>G
  hgvsp: ENSP00000257414.8:p.Ser608Ala
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17889A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17889A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5367T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.502T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1771T>G
  hgvsp: ENSP00000424388.1:p.Ser591Ala
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5367T>G
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 38271
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ser591Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

5-115803410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803410
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803410
    reference: chr 5
allele count: 1
allele frequency: 8.403078888104602e-6
allele num: 119004
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1814C>T
  hgvsp: ENSP00000257414.8:p.Thr605Ile
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5359C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.44C>T
  hgvsp: ENSP00000422997.1:p.Thr15Ile
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5359C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17897G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17897G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.494C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3477G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1763C>T
  hgvsp: ENSP00000345512.6:p.Thr588Ile
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1763C>T
  hgvsp: ENSP00000424388.1:p.Thr588Ile
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17897G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37976
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14205
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 858
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr588Ile
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

5-115803413-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803413
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803413
    reference: chr 5
allele count: 1
allele frequency: 8.4199181583955e-6
allele num: 118766
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1760C>G
  hgvsp: ENSP00000424388.1:p.Thr587Ser
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3474G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17900G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.491C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17900G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1811C>G
  hgvsp: ENSP00000257414.8:p.Thr604Ser
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5356C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.41C>G
  hgvsp: ENSP00000422997.1:p.Thr14Ser
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17900G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1760C>G
  hgvsp: ENSP00000345512.6:p.Thr587Ser
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5356C>G
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37653
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr587Ser
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-115803415-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803415
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803415
    reference: chr 5
allele count: 1
allele frequency: 8.424032078714155e-6
allele num: 118708
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5354A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1809A>C
  hgvsp: ENST00000257414.8:c.1809A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17902T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5354A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1758A>C
  hgvsp: ENST00000510263.1:c.1758A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17902T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17902T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.489A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.39A>C
  hgvsp: ENST00000513137.1:c.39A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1758A>C
  hgvsp: ENST00000343348.6:c.1758A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3472T>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 989
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37626
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1094
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr586Thr
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

5-115803427-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803427
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803427
    reference: chr 5
allele count: 2
allele frequency: 1.703461433633143e-5
allele num: 117408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17914G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1797C>T
  hgvsp: ENST00000257414.8:c.1797C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1746C>T
  hgvsp: ENST00000510263.1:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17914G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1746C>T
  hgvsp: ENST00000343348.6:c.1746C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5342C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.27C>T
  hgvsp: ENST00000513137.1:c.27C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5342C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17914G>A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3460G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.477C>T
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14007
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2464
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2114
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Leu582Leu
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

5-115803431-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803431
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803431
    reference: chr 5
allele count: 1
allele frequency: 8.557687370564979e-6
allele num: 116854
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17918G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1742C>T
  hgvsp: ENSP00000345512.6:p.Ser581Phe
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17918G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1793C>T
  hgvsp: ENSP00000257414.8:p.Ser598Phe
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5338C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3456G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1742C>T
  hgvsp: ENSP00000424388.1:p.Ser581Phe
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.23C>T
  hgvsp: ENSP00000422997.1:p.Ser8Phe
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5338C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.473C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17918G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1855
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35433
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13751
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ser581Phe
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/5-115803456-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803456
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803455
    reference: chr 5
allele count: 1
allele frequency: 8.964750600638291e-6
allele num: 111548
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.461-14delT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1730-14delT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3428delA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1730-14delT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17946delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5312delT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17946delA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17946delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1781-14delT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.-4delT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5312delT
  variant of: http://identifiers.org/hgnc/10738
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 9373
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28003
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11175
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 835
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35865
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: CA
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

5-115803460-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803460
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803460
    reference: chr 5
allele count: 8
allele frequency: 7.238115918426433e-5
allele num: 110526
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1730-17A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3427T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17947T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5309A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5309A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1781-17A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.461-17A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.-7A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1730-17A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17947T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17947T>C
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10513
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25584
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11530
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.5e0
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-115803471-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803471
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803471
    reference: chr 5
allele count: 6
allele frequency: 5.585136091149421e-5
allele num: 107428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17958A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1781-28T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3416A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17958A>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.-18T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5298T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17958A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5298T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1730-28T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1730-28T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.461-28T>A
  variant of: http://identifiers.org/hgnc/10738
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20116
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15330
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5861
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7390
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4660
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

5-115803472-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803472
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803473
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 107438
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1730-30_1730-29insC
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1781-30_1781-29insC
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17959_194+17960insG
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3415_380-3414insG
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.-20_-19insC
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17959_88+17960insG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5296_438+5297insC
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5296_325+5297insC
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.461-30_461-29insC
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17959_190+17960insG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1730-30_1730-29insC
  variant of: http://identifiers.org/hgnc/10738
canonical: false
consequence: 5' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20126
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6142
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 820
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15329
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

http://identifiers.org/exac.variant/5-115803473-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803473
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803473
    reference: chr 5
allele count: 1
allele frequency: 9.351737552837317e-6
allele num: 106932
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17960A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17960A>C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3414A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.461-30T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5296T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.-20T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1781-30T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1730-30T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1730-30T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5296T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17960A>C
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6264
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6768
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4985
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD

5-115803475-ATCACCAGAGAGACCCACAT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803475
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803456
    reference: chr 5
allele count: 1
allele frequency: 9.395317373820887e-6
allele num: 106436
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  variant of: http://identifiers.org/hgnc/10738
canonical: false
consequence: 5' UTR
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22076
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6443
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7613
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12465
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18054
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 888
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5300
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: ATCACCAGAGAGACCCACAT
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

5-115803479-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803479
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803479
    reference: chr 5
allele count: 1
allele frequency: 9.565716472163766e-6
allele num: 104540
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17966C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3408C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17966C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.461-36G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17966C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5290G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1781-36G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.-26G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1730-36G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5290G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1730-36G>A
  variant of: http://identifiers.org/hgnc/10738
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 819
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9772
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9736
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1561
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6992
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 558
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11338
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-115803487-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803487
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803487
    reference: chr 5
allele count: 1
allele frequency: 9.720251171290265e-6
allele num: 102878
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1730-44T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5282T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5282T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1730-44T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.461-44T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.-34T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17974A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1781-44T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3400A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17974A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17974A>C
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1426
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23535
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11910
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7519
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7709
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3998
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD

5-115803496-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803496
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803496
    reference: chr 5
allele count: 1
allele frequency: 1.03005706516141e-5
allele num: 97082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5273G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1730-53G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1730-53G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17983C>T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3391C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17983C>T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.-43G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1781-53G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5273G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17983C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.461-53G>A
  variant of: http://identifiers.org/hgnc/10738
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5814
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14188
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2682
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21951
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6561
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

5-115803498-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803498
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803498
    reference: chr 5
allele count: 31
allele frequency: 3.234017693206476e-4
allele num: 95856
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1781-55G>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1730-55G>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17985C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17985C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17985C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5271G>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.-45G>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5271G>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.461-55G>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3389C>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1730-55G>C
  variant of: http://identifiers.org/hgnc/10738
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21651
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2665
  bin: 9.75e1
  variant carriers: 33
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

5-115803498-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803498
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803497
    reference: chr 5
allele count: 5
allele frequency: 5.216157569687865e-5
allele num: 95856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17988delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1730-56delA
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3386delT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17988delT
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.-46delA
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5270delA
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17988delT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1781-56delA
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5270delA
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.461-56delA
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1730-56delA
  variant of: http://identifiers.org/hgnc/10738
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10460
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21651
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 213
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: CT
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

5-115803501-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803501
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803501
    reference: chr 5
allele count: 2
allele frequency: 2.128882549549742e-5
allele num: 93946
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5268A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3386T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17988T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1730-58A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1781-58A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17988T>G
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.-48A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5268A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1730-58A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.461-58A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17988T>G
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21194
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13802
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6069
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11118
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13630
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1963
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

5-115803503-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115803503
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115803503
    reference: chr 5
allele count: 1
allele frequency: 1.09072664208896e-5
allele num: 91682
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+5266G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1730-60G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1730-60G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+5266G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422997
  ensembl transcript: ENST00000513137
  gene symbol: SEMA6A
  hgvsc: ENST00000513137.1:c.-50G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.190+17990C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+17990C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+17990C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.461-60G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508424
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508424.1:n.380-3384C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1781-60G>A
  variant of: http://identifiers.org/hgnc/10738
canonical: false
consequence: 5' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11254
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21146
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2327
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9228
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: DP

5-115808537-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808537
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808537
    reference: chr 5
allele count: 9
allele frequency: 8.290346352247605e-4
allele num: 10856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1780+44A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+232A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+232A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+232A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+232A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+232A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23024T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22715T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23024T>C
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3202
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2634
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 853
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 326
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

5-115808545-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808545
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808545
    reference: chr 5
allele count: 20
allele frequency: 1.850138760407031e-3
allele num: 10810
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23032C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+224G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+224G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+224G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22707C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+224G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1780+36G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+224G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23032C>T
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2278
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2909
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 873
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 701
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1002
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

5-115808546-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808546
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808546
    reference: chr 5
allele count: 1
allele frequency: 9.276437847866419e-5
allele num: 10780
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+223C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22706G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23033G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+223C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+223C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23033G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+223C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1780+35C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+223C>T
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2254
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 844
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2846
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-115808551-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808551
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808550
    reference: chr 5
allele count: 3690
allele frequency: 4.402290622763064e-1
allele num: 8382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22685delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+217delT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1780+29delT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+217delT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+217delT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23054delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+217delT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23054delA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+217delT
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 1.75e1
  variant carriers: 1499
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 1.25e1
  variant carriers: 1530
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 7.5e0
  variant carriers: 661
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.5e0
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.75e1
  variant carriers: 236
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 726
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 164
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 225
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.25e1
  variant carriers: 272
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 165
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.25e1
  variant carriers: 119
num of homozygotes: 1
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: TA
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

5-115808551-TAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808551
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808549
    reference: chr 5
allele count: 429
allele frequency: 5.118110236220472e-2
allele num: 8382
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23053_88+23054delAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23053_194+23054delAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+216_325+217delTT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+216_438+217delTT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+216_460+217delTT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22686_191-22685delAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+216_1729+217delTT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1780+28_1780+29delTT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+216_1729+217delTT
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 7.5e0
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 1.25e1
  variant carriers: 203
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 117
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 1.75e1
  variant carriers: 221
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.5e0
  variant carriers: 48
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 6.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.25e1
  variant carriers: 27
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
reference allele: TAA
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

5-115808551-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808551
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808552
    reference: chr 5
allele count: 69
allele frequency: 8.231925554760201e-3
allele num: 8382
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+217dupT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+217dupT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23054dupA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1780+29dupT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+217dupT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+217dupT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+217dupT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22685dupA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23054dupA
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 1.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 7.5e0
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 1.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.5e0
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 15
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS

5-115808551-TAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808551
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808548
    reference: chr 5
allele count: 17
allele frequency: 2.028155571462658e-3
allele num: 8382
alternate allele: T
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1932
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1328
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1231
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3233
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 96
  num of homozygotes: 0
population: African
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 168
  num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 4
  allele frequency: 1.855287569573284e-3
  allele num: 2156
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 0
  allele frequency: 0.0e0
  allele num: 64
  num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: TAAA
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

5-115808556-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808556
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808556
    reference: chr 5
allele count: 1
allele frequency: 7.68403258029814e-5
allele num: 13014
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23043A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+213T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23043A>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+213T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22696A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+213T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1780+25T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+213T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+213T>A
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1007
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2988
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3084
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 660
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1227
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/5-115808558-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808558
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808558
    reference: chr 5
allele count: 1
allele frequency: 7.57002271006813e-5
allele num: 13210
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+211T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23045A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+211T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+211T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+211T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22694A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23045A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+211T>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1780+23T>G
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3355
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

5-115808570-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808570
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808570
    reference: chr 5
allele count: 1
allele frequency: 7.60225026607876e-5
allele num: 13154
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+199G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+199G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+199G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23057C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+199G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23057C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22682C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1780+11G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+199G>A
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1487
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

5-115808571-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808571
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808571
    reference: chr 5
allele count: 202
allele frequency: 1.539164888753429e-2
allele num: 13124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+198C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23058G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+198C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+198C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+198C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1780+10C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22681G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23058G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+198C>T
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 3.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 2.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4701
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1524
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 997
  bin: 1.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 2.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 3.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 629
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4425
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2647
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.75e1
  variant carriers: 2
num of homozygotes: 6
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

5-115808572-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808572
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808572
    reference: chr 5
allele count: 8
allele frequency: 6.836438215689625e-4
allele num: 11702
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22680T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23059T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1780+9A>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+197A>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+197A>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23059T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+197A>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+197A>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+197A>T
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 990
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 999
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4849
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 2.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1424
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 1.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 463
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.25e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

5-115808579-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808579
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808579
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 13508
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23066A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23066A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+190T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1780+2T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+190T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22673A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+190T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+190T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+190T>A
  variant of: http://identifiers.org/hgnc/10738
canonical: false
consequence: splice donor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2263
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1027
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6111
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3672
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1780+2T>A
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

5-115808588-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808588
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808588
    reference: chr 5
allele count: 1
allele frequency: 7.209805335255949e-5
allele num: 13870
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1773A>G
  hgvsp: ENST00000257414.8:c.1773A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+181A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23075T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23075T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+181A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+181A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+181A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22664T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+181A>G
  variant of: http://identifiers.org/hgnc/10738
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2268
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7051
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2302
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Thr591Thr
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

5-115808609-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808609
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808609
    reference: chr 5
allele count: 2
allele frequency: 1.376083665886886e-4
allele num: 14534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+160T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23096A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+160T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+160T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+160T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+160T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1752T>A
  hgvsp: ENSP00000257414.8:p.Asp584Glu
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22643A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23096A>T
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2487
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2463
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Asp584Glu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

5-115808620-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808620
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808620
    reference: chr 5
allele count: 1
allele frequency: 6.651589729945457e-5
allele num: 15034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23107G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+149C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+149C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22632G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+149C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+149C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1741C>G
  hgvsp: ENSP00000257414.8:p.Pro581Ala
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23107G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+149C>G
  variant of: http://identifiers.org/hgnc/10738
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2764
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11085
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2558
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2640
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Pro581Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

5-115808635-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808635
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808636
    reference: chr 5
allele count: 1
allele frequency: 6.279040562602035e-5
allele num: 15926
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23129dupA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+133dupT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+133dupT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+133dupT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23129dupA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+133dupT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1730-5dupT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+133dupT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22610dupA
canonical: false
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2673
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15037
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1621
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2764
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 0
hgvs: c.1730-5dupT
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum

5-115808681-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808681
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808681
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 22072
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23168T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+88A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+88A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+88A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+88A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23168T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22571T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1730-50A>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+88A>G
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7752
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35219
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6229
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

5-115808726-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808726
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808726
    reference: chr 5
allele count: 3
allele frequency: 6.017812725667977e-5
allele num: 49852
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23213G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1729+43C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+43C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22526G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+43C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+43C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+43C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23213G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+43C>T
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2189
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9706
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26416
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1962
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1718
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4566
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6792
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 382
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

5-115808731-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808731
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808731
    reference: chr 5
allele count: 1
allele frequency: 2.005293976096896e-5
allele num: 49868
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+38G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23218C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+38G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23218C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22521C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1729+38G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+38G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+38G>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+38G>A
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1844
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26756
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9704
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5922
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3448
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff

5-115808739-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808739
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808739
    reference: chr 5
allele count: 1
allele frequency: 1.99100067694023e-5
allele num: 50226
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+30T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23226A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23226A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1729+30T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+30T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22513A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+30T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+30T>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+30T>A
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3253
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27594
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2646
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4583
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2555
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2680
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5924
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum

5-115808745-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808745
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808745
    reference: chr 5
allele count: 1
allele frequency: 1.978239366963403e-5
allele num: 50550
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+24A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+24A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+24A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1729+24A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23232T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23232T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+24A>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22507T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+24A>C
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9251
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 645
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27761
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2509
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum

5-115808745-T-TACTGTAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808745
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808752
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 50550
alternate allele: TACTGTAA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+23_325+24insTTACAGT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1729+23_1729+24insTTACAGT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+23_1729+24insTTACAGT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+23_438+24insTTACAGT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+23_460+24insTTACAGT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+23_1729+24insTTACAGT
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2138
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1146
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3767
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28125
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

5-115808748-T-TCAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808748
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808751
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 50634
alternate allele: TCAA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+20_1729+21insTTG
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+20_1729+21insTTG
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+20_460+21insTTG
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+20_438+21insTTG
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1729+20_1729+21insTTG
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+20_325+21insTTG
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22504_191-22503insCAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23235_88+23236insCAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23235_194+23236insCAA
canonical: true
consequence: intron
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9065
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28373
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2169
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6452
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1192
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2461
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: T
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

5-115808749-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808749
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808749
    reference: chr 5
allele count: 3
allele frequency: 5.936597142517909e-5
allele num: 50534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1729+20C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+20C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+20C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23236G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+20C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22503G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+20C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+20C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23236G>A
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28413
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1881
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9011
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2178
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 520
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5410
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 329
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2071
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5926
  bin: 9.75e1
  variant carriers: 3
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

5-115808753-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808753
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808753
    reference: chr 5
allele count: 2
allele frequency: 3.934839065082238e-5
allele num: 50828
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23240G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22499G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1729+16C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+16C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+16C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+16C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23240G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+16C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+16C>T
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28686
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28888
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2292
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: ClippingRankSum

5-115808753-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808753
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808753
    reference: chr 5
allele count: 1
allele frequency: 1.967419532541119e-5
allele num: 50828
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+16C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23240G>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+16C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22499G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+16C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1729+16C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+16C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23240G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+16C>G
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8806
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28686
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1891
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2208
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5639
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1478
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28888
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2407
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

5-115808755-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808755
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808755
    reference: chr 5
allele count: 31
allele frequency: 6.053978049447331e-4
allele num: 51206
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1729+14T>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1729+14T>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23242A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.325+14T>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22497A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1729+14T>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.438+14T>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.460+14T>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23242A>G
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8765
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28783
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4658
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1260
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2494
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29452
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1212
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2223
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 5.75e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-115808770-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808770
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808770
    reference: chr 5
allele count: 52
allele frequency: 9.941878250229429e-4
allele num: 52304
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22482A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1728T>C
  hgvsp: ENST00000257414.8:c.1728T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23257A>G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1728T>C
  hgvsp: ENST00000510263.1:c.1728T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1728T>C
  hgvsp: ENST00000343348.6:c.1728T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.324T>C
  hgvsp: ENST00000282394.6:c.324T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.437T>C
  hgvsp: ENST00000515129.1:c.437T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.459T>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23257A>G
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2499
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 29172
  bin: 7.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5980
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 1.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4855
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8148
  bin: 1.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2353
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 537
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
hgvs: c.1728T>C
num of homozygotes: 1
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

5-115808783-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808783
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808783
    reference: chr 5
allele count: 1
allele frequency: 1.902659918566155e-5
allele num: 52558
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23270A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.311T>C
  hgvsp: ENSP00000282394.6:p.Phe104Ser
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1715T>C
  hgvsp: ENSP00000345512.6:p.Phe572Ser
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.446T>C
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.424T>C
  hgvsp: ENSP00000422275.1:p.Phe142Ser
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1715T>C
  hgvsp: ENSP00000257414.8:p.Phe572Ser
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22469A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23270A>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1715T>C
  hgvsp: ENSP00000424388.1:p.Phe572Ser
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5206
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8894
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28501
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5922
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 826
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Phe572Ser
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

5-115808785-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808785
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808785
    reference: chr 5
allele count: 1
allele frequency: 1.900634812027217e-5
allele num: 52614
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.444C>A
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.422C>A
  hgvsp: ENST00000515129.1:c.422C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1713C>A
  hgvsp: ENST00000343348.6:c.1713C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.309C>A
  hgvsp: ENST00000282394.6:c.309C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23272G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22467G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1713C>A
  hgvsp: ENST00000257414.8:c.1713C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23272G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1713C>A
  hgvsp: ENST00000510263.1:c.1713C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5246
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5351
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8891
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 801
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1902
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1288
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2074
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser571Ser
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-115808792-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808792
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808792
    reference: chr 5
allele count: 1
allele frequency: 1.908834084141406e-5
allele num: 52388
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1709-3C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22460G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.305-3C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.440-3C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.418-3C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23279G>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1709-3C>T
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23279G>A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1709-3C>T
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9535
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27902
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5922
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1269
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 317
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31205
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6034
  bin: 7.5e0
  variant carriers: 0
hgvs: c.1709-3C>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

5-115808796-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 115808796
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 115808796
    reference: chr 5
allele count: 1
allele frequency: 1.908688349366315e-5
allele num: 52392
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000345512
  ensembl transcript: ENST00000343348
  gene symbol: SEMA6A
  hgvsc: ENST00000343348.6:c.1709-7C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl transcript: ENST00000506114
  gene symbol: SEMA6A
  hgvsc: ENST00000506114.1:n.440-7C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000424388
  ensembl transcript: ENST00000510263
  gene symbol: SEMA6A
  hgvsc: ENST00000510263.1:c.1709-7C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000257414
  ensembl transcript: ENST00000257414
  gene symbol: SEMA6A
  hgvsc: ENST00000257414.8:c.1709-7C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000514214
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000514214.1:n.88+23283G>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000422275
  ensembl transcript: ENST00000515129
  gene symbol: SEMA6A
  hgvsc: ENST00000515129.1:c.418-7C>G
  variant of: http://identifiers.org/hgnc/10738
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000510682
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000510682.1:n.194+23283G>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000248445
  ensembl transcript: ENST00000508640
  gene symbol: CTB-118N6.3
  hgvsc: ENST00000508640.1:n.191-22456G>C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000092421
  ensembl protein: ENSP00000282394
  ensembl transcript: ENST00000282394
  gene symbol: SEMA6A
  hgvsc: ENST00000282394.6:c.305-7C>G
  variant of: http://identifiers.org/hgnc/10738
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9943
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27488
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2498
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1897
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5922
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1606
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1709-7C>G
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3550
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46742
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 592
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 933
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2643
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66010
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.765848490199541e-4
allele num: 11326
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15966
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.121e1

VQSLOD
type: SiteQuality
SIO_000300: 7.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.657e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 4.739e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.71e-1

DP
type: SiteQuality
SIO_000300: 1.49394e6

GenotypeQuality
all individuals: 232
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 587
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3608
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2642
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 257
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5109391998066e-5
allele num: 66184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.112e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: -3.02e-1

DP
type: SiteQuality
SIO_000300: 1.503415e6

BaseQRankSum
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SIO_000300: -2.512e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.431e1

VQSLOD
type: SiteQuality
SIO_000300: 2.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.029e0

GenotypeQuality
all individuals: 16
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018321209743141e-5
allele num: 66262
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

FS
type: SiteQuality
SIO_000300: 2.704e0

MQRankSum
type: SiteQuality
SIO_000300: -1.188e0

QD
type: SiteQuality
SIO_000300: 1.505e1

MQ
type: SiteQuality
SIO_000300: 5.983e1

DP
type: SiteQuality
SIO_000300: 1.50795e6

VQSLOD
type: SiteQuality
SIO_000300: 1.2e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.44e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508477644361311e-5
allele num: 66292
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.6e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.57e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.03e0

DP
type: SiteQuality
SIO_000300: 1.508505e6

QD
type: SiteQuality
SIO_000300: 9.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.37e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9650
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169590643274854e-4
allele num: 8550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66296
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16138
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 9.66e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.422e0

FS
type: SiteQuality
SIO_000300: 9.1e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.19e-1

QD
type: SiteQuality
SIO_000300: 1.186e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.76e-1

DP
type: SiteQuality
SIO_000300: 1.509086e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508204633204633e-5
allele num: 66304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.221e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.172e0

VQSLOD
type: SiteQuality
SIO_000300: -2.384e-1

FS
type: SiteQuality
SIO_000300: 3.292e0

MQRankSum
type: SiteQuality
SIO_000300: 4.84e-1

DP
type: SiteQuality
SIO_000300: 1.510861e6

QD
type: SiteQuality
SIO_000300: 9.130000000000001e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16168
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.754078231889142e-4
allele num: 11402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66338
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.512821e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.01e-1

VQSLOD
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.22e1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 4.91e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.26e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11402
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9664
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.013682116810319e-5
allele num: 66364
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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QD
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
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DP
type: SiteQuality
SIO_000300: 1.515219e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66380
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.185056902523504e-5
allele num: 16168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11400
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9668
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.592e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.610000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.11e-1

DP
type: SiteQuality
SIO_000300: 1.515907e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.01e-1

QD
type: SiteQuality
SIO_000300: 9.960000000000001e0

GenotypeQuality
all individuals: 335
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3685
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507567991316408e-5
allele num: 66332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11384
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 2.052e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.860000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.213e0

QD
type: SiteQuality
SIO_000300: 1.528e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.88e-1

DP
type: SiteQuality
SIO_000300: 1.516178e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.19348445435402e-5
allele num: 16146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 1.515326e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.692e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.216e1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 315
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variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.519295047098146e-4
allele num: 6582
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11376
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

QD
type: SiteQuality
SIO_000300: 1.216e1

DP
type: SiteQuality
SIO_000300: 1.515326e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.692e0

MQ
type: SiteQuality
SIO_000300: 5.982e1

MQRankSum
type: SiteQuality
SIO_000300: 4.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.33e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

GenotypeQuality
all individuals: 179
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508250128201261e-5
allele num: 66302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.515397e6

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.354e0

QD
type: SiteQuality
SIO_000300: 4.47e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.97e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.208866261020738e-5
allele num: 16106
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.018503426001389e-5
allele num: 66258
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.64e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.514697e6

FS
type: SiteQuality
SIO_000300: 4.736e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 4.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

QD
type: SiteQuality
SIO_000300: 1.057e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.99e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.210408644888833e-5
allele num: 16102
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66250
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -1.224e0

MQ
type: SiteQuality
SIO_000300: 5.909e1

DP
type: SiteQuality
SIO_000300: 1.515534e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.399999999999999e-3

QD
type: SiteQuality
SIO_000300: 7.4e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 3
allele frequency: 3.11332503113325e-4
allele num: 9636
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16098
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66254
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8514
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.944e1

DP
type: SiteQuality
SIO_000300: 1.514433e6

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.264e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

BaseQRankSum
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SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.3e-3

QD
type: SiteQuality
SIO_000300: 1.247e1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25
bin: 1.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.529395778603134e-5
allele num: 66234
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.79e-1

QD
type: SiteQuality
SIO_000300: 1.19e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

DP
type: SiteQuality
SIO_000300: 1.514367e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.373e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 6.697e0

GenotypeQuality
all individuals: 48678
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509433962264151e-5
allele num: 66250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.026e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

FS
type: SiteQuality
SIO_000300: 1.274e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.54e-1

DP
type: SiteQuality
SIO_000300: 1.513574e6

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 2.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11326
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.245316012990258e-5
allele num: 16012
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.972e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.202e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -4.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.06e0

FS
type: SiteQuality
SIO_000300: 1.98e0

DP
type: SiteQuality
SIO_000300: 1.509818e6

VQSLOD
type: SiteQuality
SIO_000300: 7.9e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.31e-1

QD
type: SiteQuality
SIO_000300: 1.517e1

GenotypeQuality
all individuals: 230
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 116
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variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15944
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.043405676126878e-4
allele num: 9584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66022
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.800000000000001e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e0

DP
type: SiteQuality
SIO_000300: 1.506346e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.273e0

QD
type: SiteQuality
SIO_000300: 1.392e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.909999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e0

GenotypeQuality
all individuals: 804
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 905
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variant carriers: 0

GenotypeQuality
all individuals: 1712
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variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 230
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GenotypeQuality
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GenotypeQuality
all individuals: 8
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 3546
bin: 6.75e1
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GenotypeQuality
all individuals: 48095
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15932
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11298
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515427047341941e-5
allele num: 65988
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.775e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.442e1

MQRankSum
type: SiteQuality
SIO_000300: -1.35e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.17e-1

DP
type: SiteQuality
SIO_000300: 1.505381e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.830000000000001e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11144
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8418
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.06063110213326e-5
allele num: 65346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15678
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9452
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ClippingRankSum
type: SiteQuality
SIO_000300: -3.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.87e-1

QD
type: SiteQuality
SIO_000300: 8.65e0

FS
type: SiteQuality
SIO_000300: 3.502e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.34e0

VQSLOD
type: SiteQuality
SIO_000300: -4.34e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.484964e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11078
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537231753059091e-5
allele num: 65052
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.19e0

VQSLOD
type: SiteQuality
SIO_000300: -4.907e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.45e-1

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.473881e6

FS
type: SiteQuality
SIO_000300: 2.315e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.955e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.604724308363823e-5
allele num: 62316
num of homozygotes: 0

Other
type: Population
allele count: 0
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allele num: 824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.346645e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

FS
type: SiteQuality
SIO_000300: 4.481e0

BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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SIO_000300: 4.36e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1228
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 616
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2529
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2644
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 11813
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2697
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2293
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 33057
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 6
allele frequency: 5.784805244890089e-4
allele num: 10372
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.23907621546335e-5
allele num: 61746
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9036
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14450
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 4.861e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.39e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.310255e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

GenotypeQuality
all individuals: 5875
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17141
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19849
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2641
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1671
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 5.75e1
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GenotypeQuality
all individuals: 570
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 509
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2934
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 607
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6098
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13980
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9974
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8830
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.979044007584074e-5
allele num: 60126
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.168634e6

VQSLOD
type: SiteQuality
SIO_000300: 1.87e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.061e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

QD
type: SiteQuality
SIO_000300: 9.699999999999999e0

GenotypeQuality
all individuals: 20309
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4666
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 570
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 262
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1674
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8834
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60120
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13986
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 6.66e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.331e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.2e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.97e0

DP
type: SiteQuality
SIO_000300: 1.168098e6

GenotypeQuality
all individuals: 766
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1568
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 219
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 582
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17658
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3336
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 708
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6433
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
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variant carriers: 0

GenotypeQuality
all individuals: 17637
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9938
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.203572972194209e-5
allele num: 13882
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8776
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.146703e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.179999999999999e-1

QD
type: SiteQuality
SIO_000300: 2.357e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.486e0

GenotypeQuality
all individuals: 62
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 751
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 696
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 674
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 566
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3666
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6999
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 492
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15760
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 437
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 786
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7558
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8738
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.246376811594203e-5
allele num: 13800
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.7e0

DP
type: SiteQuality
SIO_000300: 1.126423e6

MQ
type: SiteQuality
SIO_000300: 4.712e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: -5.765e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.12e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.016e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.69e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

GenotypeQuality
all individuals: 968
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5801
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18319
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1157
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4516
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8089
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variant carriers: 0

GenotypeQuality
all individuals: 457
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variant carriers: 0

GenotypeQuality
all individuals: 831
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2636
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 899
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1051
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1262
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.706484641638225e-5
allele num: 58600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9636
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 780
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6014
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.577e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.6e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.65e-1

DP
type: SiteQuality
SIO_000300: 1.087648e6

MQ
type: SiteQuality
SIO_000300: 5.814e1

QD
type: SiteQuality
SIO_000300: 1.855e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.852e0

GenotypeQuality
all individuals: 5354
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1463
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 485
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GenotypeQuality
all individuals: 215
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GenotypeQuality
all individuals: 1150
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GenotypeQuality
all individuals: 18609
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 141
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GenotypeQuality
all individuals: 6117
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variant carriers: 0

GenotypeQuality
all individuals: 391
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variant carriers: 0

GenotypeQuality
all individuals: 8801
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variant carriers: 0

GenotypeQuality
all individuals: 837
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1297
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2634
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1154
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.733162327983639e-5
allele num: 57698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8474
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5956
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.88e0

VQSLOD
type: SiteQuality
SIO_000300: -3.61e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.93e0

MQRankSum
type: SiteQuality
SIO_000300: 1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.333e0

DP
type: SiteQuality
SIO_000300: 1.052773e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 7.9e0

GenotypeQuality
all individuals: 4086
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15578
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2899
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variant carriers: 0

GenotypeQuality
all individuals: 9322
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variant carriers: 0

GenotypeQuality
all individuals: 1959
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GenotypeQuality
all individuals: 990
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GenotypeQuality
all individuals: 954
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GenotypeQuality
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GenotypeQuality
all individuals: 1747
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GenotypeQuality
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GenotypeQuality
all individuals: 316
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GenotypeQuality
all individuals: 2276
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GenotypeQuality
all individuals: 525
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GenotypeQuality
all individuals: 349
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GenotypeQuality
all individuals: 480
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GenotypeQuality
all individuals: 212
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GenotypeQuality
all individuals: 2632
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2649
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.141996417521577e-5
allele num: 12282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8796
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.202e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

MQRankSum
type: SiteQuality
SIO_000300: 2.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -2.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.027e0

DP
type: SiteQuality
SIO_000300: 1.012494e6

GenotypeQuality
all individuals: 955
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 376
bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 2010
bin: 7.5e0
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GenotypeQuality
all individuals: 6534
bin: 3.75e1
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GenotypeQuality
all individuals: 2311
bin: 4.25e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 6241
bin: 2.75e1
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GenotypeQuality
all individuals: 477
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 26
allele frequency: 4.585537918871252e-3
allele num: 5670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 9.254803242883056e-5
allele num: 54026
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8054
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 1.026e0

QD
type: SiteQuality
SIO_000300: 1.374e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.415e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

DP
type: SiteQuality
SIO_000300: 1.008625e6

GenotypeQuality
all individuals: 1196
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 477
bin: 8.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 15020
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2311
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9309
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 5
allele frequency: 6.208095356344674e-4
allele num: 8054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5670
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6640
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54026
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12094
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.41e-1

DP
type: SiteQuality
SIO_000300: 1.008625e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.29e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.02e-1

FS
type: SiteQuality
SIO_000300: 1.026e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

QD
type: SiteQuality
SIO_000300: 1.374e1

VQSLOD
type: SiteQuality
SIO_000300: 3.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.415e0

GenotypeQuality
all individuals: 366
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1955
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2636
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1706
bin: 5.25e1
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GenotypeQuality
all individuals: 477
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GenotypeQuality
all individuals: 350
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11866
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7930
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.773300128292204e-5
allele num: 53004
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.203e0

VQSLOD
type: SiteQuality
SIO_000300: 8.120000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.44e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 8.31e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

DP
type: SiteQuality
SIO_000300: 1.003621e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.44e-1

GenotypeQuality
all individuals: 918
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2345
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variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 2635
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2045
bin: 7.5e0
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GenotypeQuality
all individuals: 351
bin: 9.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 6144
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12691
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 51862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5480
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.236093943139679e-4
allele num: 8090
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7784
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.279999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.7e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.003183e6

GenotypeQuality
all individuals: 12
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 32
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 750
bin: 2.75e1
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GenotypeQuality
all individuals: 579
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 391
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
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GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 1035
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.25e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 226
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 3.424657534246575e-2
allele num: 146
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1042
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2814
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 6.257822277847309e-4
allele num: 6392
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.41e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.07e-1

FS
type: SiteQuality
SIO_000300: 1.091e0

DP
type: SiteQuality
SIO_000300: 1.13585e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.7e-2

QD
type: SiteQuality
SIO_000300: 1.527e1

GenotypeQuality
all individuals: 335
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2644
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 23
bin: 9.75e1
variant carriers: 20

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 146
bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 480
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
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GenotypeQuality
all individuals: 107
bin: 6.75e1
variant carriers: 1

Other
type: Population
allele count: 2
allele frequency: 1.428571428571429e-2
allele num: 140
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 944
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 240
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 5.341880341880342e-3
allele num: 2808
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 4.659832246039142e-4
allele num: 6438
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 2.699e0

VQSLOD
type: SiteQuality
SIO_000300: 6.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.537e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.7e-2

MQ
type: SiteQuality
SIO_000300: 5.914e1

DP
type: SiteQuality
SIO_000300: 1.19581e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.200000000000001e-3

QD
type: SiteQuality
SIO_000300: 1.322e1

GenotypeQuality
all individuals: 315
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 731
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1739
bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
all individuals: 497
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GenotypeQuality
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GenotypeQuality
all individuals: 115
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GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 7.75e1
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GenotypeQuality
all individuals: 677
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 92
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6462
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.571428571428571e-4
allele num: 2800
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: -1.093e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.1e-1

QD
type: SiteQuality
SIO_000300: 1.067e1

DP
type: SiteQuality
SIO_000300: 1.20951e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

GenotypeQuality
all individuals: 1328
bin: 9.75e1
variant carriers: 1216

GenotypeQuality
all individuals: 1231
bin: 7.5e0
variant carriers: 138

GenotypeQuality
all individuals: 3233
bin: 2.5e0
variant carriers: 116

GenotypeQuality
all individuals: 198
bin: 1.75e1
variant carriers: 135

GenotypeQuality
all individuals: 224
bin: 7.75e1
variant carriers: 198

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 193

GenotypeQuality
all individuals: 256
bin: 6.25e1
variant carriers: 232

GenotypeQuality
all individuals: 279
bin: 7.25e1
variant carriers: 251

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 182

GenotypeQuality
all individuals: 234
bin: 8.75e1
variant carriers: 216

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 253

GenotypeQuality
all individuals: 279
bin: 6.75e1
variant carriers: 257

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 119

European (Non-Finnish)
type: Population
allele count: 948
allele frequency: 4.397031539888683e-1
allele num: 2156
num of homozygotes: 0

African
type: Population
allele count: 73
allele frequency: 4.345238095238095e-1
allele num: 168
num of homozygotes: 0

Other
type: Population
allele count: 38
allele frequency: 3.958333333333333e-1
allele num: 96
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 391
allele frequency: 4.791666666666667e-1
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 60
allele frequency: 4.545454545454545e-1
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 31
allele frequency: 4.84375e-1
allele num: 64
num of homozygotes: 1

South Asian
type: Population
allele count: 2149
allele frequency: 4.341414141414142e-1
allele num: 4950
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.34e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

DP
type: SiteQuality
SIO_000300: 1.24193e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.03e-2

GenotypeQuality
all individuals: 228
bin: 1.25e1
variant carriers: 37

GenotypeQuality
all individuals: 279
bin: 6.75e1
variant carriers: 22

GenotypeQuality
all individuals: 3233
bin: 2.5e0
variant carriers: 45

GenotypeQuality
all individuals: 221
bin: 8.25e1
variant carriers: 26

GenotypeQuality
all individuals: 204
bin: 3.25e1
variant carriers: 27

GenotypeQuality
all individuals: 1328
bin: 9.75e1
variant carriers: 107

GenotypeQuality
all individuals: 279
bin: 7.25e1
variant carriers: 27

GenotypeQuality
all individuals: 224
bin: 4.25e1
variant carriers: 19

GenotypeQuality
all individuals: 234
bin: 8.75e1
variant carriers: 19

GenotypeQuality
all individuals: 249
bin: 4.75e1
variant carriers: 17

GenotypeQuality
all individuals: 224
bin: 7.75e1
variant carriers: 26

GenotypeQuality
all individuals: 198
bin: 1.75e1
variant carriers: 43

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 14

European (Non-Finnish)
type: Population
allele count: 111
allele frequency: 5.148423005565863e-2
allele num: 2156
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 36
allele frequency: 4.411764705882353e-2
allele num: 816
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 4.6875e-2
allele num: 64
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 4.166666666666666e-2
allele num: 168
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 8.333333333333333e-2
allele num: 96
num of homozygotes: 0

South Asian
type: Population
allele count: 261
allele frequency: 5.272727272727273e-2
allele num: 4950
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 2.272727272727273e-2
allele num: 132
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

DP
type: SiteQuality
SIO_000300: 1.24193e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.03e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 5.34e0

GenotypeQuality
all individuals: 228
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 3233
bin: 2.5e0
variant carriers: 14

GenotypeQuality
all individuals: 256
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1328
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 234
bin: 2.25e1
variant carriers: 12

GenotypeQuality
all individuals: 178
bin: 2.75e1
variant carriers: 19

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 6

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 306
bin: 5.25e1
variant carriers: 6

GenotypeQuality
all individuals: 279
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 224
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 6.75e1
variant carriers: 1

Other
type: Population
allele count: 2
allele frequency: 2.083333333333333e-2
allele num: 96
num of homozygotes: 0

South Asian
type: Population
allele count: 43
allele frequency: 8.686868686868687e-3
allele num: 4950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.225490196078431e-3
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.515151515151515e-2
allele num: 132
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.19047619047619e-2
allele num: 168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 19
allele frequency: 8.812615955473098e-3
allele num: 2156
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

DP
type: SiteQuality
SIO_000300: 1.24193e5

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

QD
type: SiteQuality
SIO_000300: 5.34e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.03e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

South Asian
type: Population
allele count: 13
allele frequency: 2.626262626262626e-3
allele num: 4950
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 132
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.03e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.79e-1

DP
type: SiteQuality
SIO_000300: 1.24193e5

MQRankSum
type: SiteQuality
SIO_000300: 4.11e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

QD
type: SiteQuality
SIO_000300: 5.34e0

GenotypeQuality
all individuals: 355
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 840
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 684
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 517
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.847380410022779e-4
allele num: 3512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1470
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 174
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.226e0

DP
type: SiteQuality
SIO_000300: 1.76665e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.564e0

MQ
type: SiteQuality
SIO_000300: 6.013e1

VQSLOD
type: SiteQuality
SIO_000300: -2.002e0

MQRankSum
type: SiteQuality
SIO_000300: -1.159e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

QD
type: SiteQuality
SIO_000300: 2.012e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

GenotypeQuality
all individuals: 632
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 324
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1369
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 366
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 310
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7386
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.799552071668533e-4
allele num: 3572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1474
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.73e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

VQSLOD
type: SiteQuality
SIO_000300: -5.676e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.757e0

MQ
type: SiteQuality
SIO_000300: 6.011e1

MQRankSum
type: SiteQuality
SIO_000300: 8.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.84e-2

QD
type: SiteQuality
SIO_000300: 1.788e1

DP
type: SiteQuality
SIO_000300: 1.77848e5

GenotypeQuality
all individuals: 113
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1515
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 570
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 580
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 493
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 347
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4215
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7352
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1476
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.82326369282891e-4
allele num: 3542
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.075e1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

FS
type: SiteQuality
SIO_000300: 5.118e0

QD
type: SiteQuality
SIO_000300: 8.01e0

VQSLOD
type: SiteQuality
SIO_000300: -1.397e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.64e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

MQRankSum
type: SiteQuality
SIO_000300: -9.1e-2

DP
type: SiteQuality
SIO_000300: 1.78685e5

GenotypeQuality
all individuals: 1527
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 447
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 312
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 44
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 91
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 555
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 513
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 225
bin: 9.75e1
variant carriers: 182

GenotypeQuality
all individuals: 228
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 40
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 304
bin: 1.25e1
variant carriers: 2

South Asian
type: Population
allele count: 184
allele frequency: 2.496607869742198e-2
allele num: 7370
num of homozygotes: 5

East Asian
type: Population
allele count: 9
allele frequency: 5.0e-2
allele num: 180
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 9.316770186335404e-3
allele num: 322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1418
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.310344827586207e-2
allele num: 116
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.816901408450704e-4
allele num: 3550
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 168
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.994e1

FS
type: SiteQuality
SIO_000300: 1.909e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-2

DP
type: SiteQuality
SIO_000300: 1.80617e5

VQSLOD
type: SiteQuality
SIO_000300: 4.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.32e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.6e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.75e-1

QD
type: SiteQuality
SIO_000300: 1.219e1

GenotypeQuality
all individuals: 1365
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 291
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 4465
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 393
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 227
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 1.75e1
variant carriers: 4

GenotypeQuality
all individuals: 194
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 454
bin: 3.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 128
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7248
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.119951040391676e-4
allele num: 3268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.276595744680851e-2
allele num: 470
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.98e-2

FS
type: SiteQuality
SIO_000300: 5.2913e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.725e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

QD
type: SiteQuality
SIO_000300: 2.0e-1

DP
type: SiteQuality
SIO_000300: 1.85349e5

MQRankSum
type: SiteQuality
SIO_000300: -1.8e-1

MQ
type: SiteQuality
SIO_000300: 5.996e1

VQSLOD
type: SiteQuality
SIO_000300: -1.231e1

GenotypeQuality
all individuals: 1906
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5736
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 806
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 194
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7450
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 366
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.97498e5

VQSLOD
type: SiteQuality
SIO_000300: -2.645e0

QD
type: SiteQuality
SIO_000300: 2.836e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.44e-2

GenotypeQuality
all individuals: 51
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 372
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4143
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 53
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6699
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 182
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 394
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7458
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 2.541942043721403e-4
allele num: 3934
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e-1

MQRankSum
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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QD
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VQSLOD
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FS
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ReadPosRankSum
type: SiteQuality
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 2.653927813163482e-4
allele num: 7536
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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num of homozygotes: 0

QD
type: SiteQuality
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MQRankSum
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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MQ
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ClippingRankSum
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BaseQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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South Asian
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allele num: 7574
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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FS
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QD
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MQRankSum
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VQSLOD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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allele num: 1586
num of homozygotes: 0

Other
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
type: SiteQuality
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QD
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DP
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
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SIO_000300: 1.3e0

DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 9.640102827763496e-4
allele num: 3112
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Other
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ClippingRankSum
type: SiteQuality
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MQRankSum
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MQ
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FS
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ReadPosRankSum
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VQSLOD
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DP
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InbreedingCoeff
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Non-Finnish)
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European (Finnish)
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allele num: 3274
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African
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Other
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Latino
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South Asian
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DP
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BaseQRankSum
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QD
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MQRankSum
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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MQ
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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DP
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MQ
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MQRankSum
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QD
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FS
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Latino
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East Asian
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European (Finnish)
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Other
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South Asian
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ClippingRankSum
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MQ
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InbreedingCoeff
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FS
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MQRankSum
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BaseQRankSum
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QD
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DP
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VQSLOD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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European (Non-Finnish)
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South Asian
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2974
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.271e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.44e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

QD
type: SiteQuality
SIO_000300: 1.347e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.11e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.08e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.07e0

DP
type: SiteQuality
SIO_000300: 1.155622e6

GenotypeQuality
all individuals: 520
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5365
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26458
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3228
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5028
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.159893e6

MQ
type: SiteQuality
SIO_000300: 4.712e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.59e0

VQSLOD
type: SiteQuality
SIO_000300: 8.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.067e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.21e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.067e0

QD
type: SiteQuality
SIO_000300: 2.648e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2458
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 2.28310502283105e-3
allele num: 438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2976
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26384
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.169668040789759e-4
allele num: 9218
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.08e0

FS
type: SiteQuality
SIO_000300: 2.262e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.24e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.429999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.24e-1

DP
type: SiteQuality
SIO_000300: 1.161718e6

VQSLOD
type: SiteQuality
SIO_000300: 2.49e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.1e-2

MQ
type: SiteQuality
SIO_000300: 5.933e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.649e0

GenotypeQuality
all individuals: 649
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.760529482551143e-5
allele num: 26592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.34001336005344e-4
allele num: 2994
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3270
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

VQSLOD
type: SiteQuality
SIO_000300: -1.957e0

DP
type: SiteQuality
SIO_000300: 1.167869e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.15e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 2.781e0

QD
type: SiteQuality
SIO_000300: 6.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

GenotypeQuality
all individuals: 280
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1998
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1198
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3270
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2994
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.980982567353407e-4
allele num: 5048
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9234
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26592
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 1.167869e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.04e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.15e-1

FS
type: SiteQuality
SIO_000300: 2.781e0

VQSLOD
type: SiteQuality
SIO_000300: -1.957e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 5953
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variant carriers: 35

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 265
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3298
num of homozygotes: 0

South Asian
type: Population
allele count: 31
allele frequency: 3.344842468709538e-3
allele num: 9268
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26804
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3040
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

QD
type: SiteQuality
SIO_000300: 1.188e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.15e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 2.567e0

DP
type: SiteQuality
SIO_000300: 1.17249e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.6e-2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.75e1
variant carriers: 47

GenotypeQuality
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GenotypeQuality
all individuals: 2100
bin: 2.75e1
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GenotypeQuality
all individuals: 283
bin: 8.75e1
variant carriers: 2

African
type: Population
allele count: 52
allele frequency: 1.007751937984496e-2
allele num: 5160
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3334
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3386
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27428
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.9e-3

DP
type: SiteQuality
SIO_000300: 1.194596e6

FS
type: SiteQuality
SIO_000300: 1.145e0

VQSLOD
type: SiteQuality
SIO_000300: 3.91e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e-1

QD
type: SiteQuality
SIO_000300: 1.312e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.72e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.63e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.39e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.071122536418166e-4
allele num: 9336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3408
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5172
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.13e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.186943e6

QD
type: SiteQuality
SIO_000300: 8.619999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: 6.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.1e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 112
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GenotypeQuality
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GenotypeQuality
all individuals: 637
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GenotypeQuality
all individuals: 436
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GenotypeQuality
all individuals: 1218
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.946375957572186e-4
allele num: 3394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3286
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9344
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27612
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.188172e6

MQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQ
type: SiteQuality
SIO_000300: 5.907e1

FS
type: SiteQuality
SIO_000300: 6.123e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.14e-2

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -2.26e-1

QD
type: SiteQuality
SIO_000300: 6.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.7e-2

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1426
bin: 1.75e1
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GenotypeQuality
all individuals: 965
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1206
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6104
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5921
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 635
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9326
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.958579881656805e-4
allele num: 3380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3248
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e0

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

DP
type: SiteQuality
SIO_000300: 1.177973e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.029e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 2.476e1

GenotypeQuality
all individuals: 124
bin: 4.25e1
variant carriers: 0