5-251645-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251645
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251645
    reference: chr 5
allele count: 84
allele frequency: 8.710620735425265e-4
allele num: 96434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+62C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+62C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+62C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+62C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1896C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+487C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+62C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+62C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2828C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+62C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2863C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+62C>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10768
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12463
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3194
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10601
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1821
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15841
  bin: 2.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 607
  bin: 9.75e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum

5-251652-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251652
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251652
    reference: chr 5
allele count: 1
allele frequency: 1.105216622458002e-5
allele num: 90480
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+69C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1903C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+69C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+69C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+69C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+69C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+69C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+494C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+69C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2821C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2856C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+69C>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12608
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2500
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2027
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8934
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14674
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12582
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2828
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

5-251654-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251654
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251654
    reference: chr 5
allele count: 1
allele frequency: 1.117093768850957e-5
allele num: 89518
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+71G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+71G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+71G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1905G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+496G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+71G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+71G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+71G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+71G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+71G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2819G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2854G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

5-251654-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251654
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251654
    reference: chr 5
allele count: 1
allele frequency: 1.117093768850957e-5
allele num: 89518
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2854G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2819G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+71G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+71G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+71G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+496G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+71G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1905G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+71G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+71G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+71G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+71G>C
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 823
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12330
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8726
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

5-251655-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251655
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251655
    reference: chr 5
allele count: 2
allele frequency: 2.257846014901784e-5
allele num: 88580
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2818C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+72C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+72C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+72C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1906C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+72C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+497C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+72C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+72C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+72C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2853C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+72C>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2847
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8439
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11889
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15191
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

5-251656-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251656
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251656
    reference: chr 5
allele count: 1
allele frequency: 1.140276859221419e-5
allele num: 87698
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+73A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2852A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+498A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+73A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+73A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2817A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+73A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1907A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+73A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+73A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+73A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+73A>G
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3079
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11363
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15561
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13441
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

5-251663-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251663
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251663
    reference: chr 5
allele count: 19
allele frequency: 2.355741810697548e-4
allele num: 80654
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+80C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2810C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+80C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+80C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2845C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+80C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+505C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+80C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1914C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+80C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+80C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+80C>G
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2227
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14818
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2502
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17017
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8363
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
reference allele: C
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

5-251665-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251665
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251665
    reference: chr 5
allele count: 3
allele frequency: 3.784247439325899e-5
allele num: 79276
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2843G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1916G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+82G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+82G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+82G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+82G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+82G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+507G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+82G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2808G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+82G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+82G>C
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 816
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15048
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1101
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 598
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17187
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

5-251667-AT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251667
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251666
    reference: chr 5
allele count: 256
allele frequency: 3.399192691735713e-3
allele num: 75312
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1922delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+88delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+88delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+513delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+88delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+88delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+88delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+88delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+88delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2802delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+88delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2837delT
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2051
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 15437
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 17490
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5223
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 6620
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: AT
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

5-251669-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251669
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251669
    reference: chr 5
allele count: 1
allele frequency: 1.394427866246479e-5
allele num: 71714
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2804T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+86T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+86T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+511T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1920T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+86T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+86T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+86T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+86T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+86T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2839T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+86T>C
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15828
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17552
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4425
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7777
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2684
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 713
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/5-251672-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251672
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251672
    reference: chr 5
allele count: 256
allele frequency: 3.753995952723113e-3
allele num: 68194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2836C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+89C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+89C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+89C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+89C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+514C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2801C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1923C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+89C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+89C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+89C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+89C>A
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 2.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 17434
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16164
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4985
  bin: 2.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8751
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

5-251674-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251674
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251674
    reference: chr 5
allele count: 260
allele frequency: 3.863987635239567e-3
allele num: 67288
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+91T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1925T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2834T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+91T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+91T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+91T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+91T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+516T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+91T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2799T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+91T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+91T>G
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2630
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 9086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 17321
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 16307
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1721
  bin: 3.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 9.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4836
  bin: 2.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

5-251675-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251675
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251675
    reference: chr 5
allele count: 1
allele frequency: 1.479640151515152e-5
allele num: 67584
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2798T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+517T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+92T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+92T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+92T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2833T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+92T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+92T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+92T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+92T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1926T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+92T>C
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2529
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17255
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16418
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

5-251676-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251676
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251676
    reference: chr 5
allele count: 4
allele frequency: 6.084575600851841e-5
allele num: 65740
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2832C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+518C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+93C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+93C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+93C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+93C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1927C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+93C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+93C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+93C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+93C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2797C>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4306
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9940
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17149
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16474
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-251677-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251677
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251677
    reference: chr 5
allele count: 5
allele frequency: 7.710813645055826e-5
allele num: 64844
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+94G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1928G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+519G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2796G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+94G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+94G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+94G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+94G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2831G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+94G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+94G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+94G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17141
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3342
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10247
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16576
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

5-251680-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251680
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251680
    reference: chr 5
allele count: 280
allele frequency: 4.832752252407746e-3
allele num: 57938
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2828G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+97G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2793G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+97G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+97G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+97G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+97G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+97G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+522G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1931G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+97G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+97G>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 4.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 17047
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2807
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11633
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 3.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 16521
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3044
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 9.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 8.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

5-251689-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251689
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251689
    reference: chr 5
allele count: 1
allele frequency: 2.011101279060413e-5
allele num: 49724
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+106G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+106G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+106G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+106G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2784G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+106G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+531G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1940G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2819G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+106G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+106G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+106G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16540
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14528
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16387
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

5-251703-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251703
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251702
    reference: chr 5
allele count: 1225
allele frequency: 3.990228013029316e-2
allele num: 30700
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+121delG
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+121delG
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2769delG
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2804delG
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+121delG
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1955delG
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+121delG
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+121delG
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+121delG
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+546delG
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+121delG
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+121delG
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 8136
  bin: 1.25e1
  variant carriers: 241
genotype depth: GenotypeDepth
  all individuals: 1371
  bin: 1.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 8.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 6.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 4.25e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 5.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 20700
  bin: 2.5e0
  variant carriers: 387
genotype depth: GenotypeDepth
  all individuals: 15325
  bin: 7.5e0
  variant carriers: 405
genotype depth: GenotypeDepth
  all individuals: 991
  bin: 9.75e1
  variant carriers: 298
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 2.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 3.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 5.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 1238
  bin: 3.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 9.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.25e1
  variant carriers: 97
genotype quality: GenotypeQuality
num of homozygotes: 48
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
population: Latino
population: South Asian
reference allele: TG
site quality: DP
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

5-251704-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251704
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251704
    reference: chr 5
allele count: 345
allele frequency: 1.281479830621796e-2
allele num: 26922
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+121G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+121G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+121G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1955G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+121G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+546G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+121G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2769G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2804G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+121G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+121G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+121G>C
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 15013
  bin: 7.5e0
  variant carriers: 348
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1157
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 7531
  bin: 1.25e1
  variant carriers: 128
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21006
  bin: 2.5e0
  variant carriers: 280
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 1.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1137
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum

5-251706-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251706
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251705
    reference: chr 5
allele count: 1
allele frequency: 3.601786486097104e-5
allele num: 27764
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1962delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+128delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+128delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2762delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+128delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+128delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2797delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+553delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+128delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+128delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+128delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+128delT
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22624
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: Other
reference allele: CT
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

5-251707-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251707
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251707
    reference: chr 5
allele count: 1191
allele frequency: 4.398729502142119e-2
allele num: 27076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+124T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+124T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+124T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+124T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2766T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1958T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+124T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+124T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2801T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+124T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+124T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+549T>C
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 23034
  bin: 2.5e0
  variant carriers: 439
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 2.75e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 13988
  bin: 7.5e0
  variant carriers: 387
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 1.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 6540
  bin: 1.25e1
  variant carriers: 239
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 2.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 3.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 4.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1206
  bin: 3.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 4.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 9.75e1
  variant carriers: 294
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 9.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
num of homozygotes: 47
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

5-251710-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251710
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251710
    reference: chr 5
allele count: 1
allele frequency: 3.892868265337901e-5
allele num: 25688
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2798T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+127T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1961T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+127T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+127T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+127T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2763T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+127T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+127T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+127T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+552T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+127T>A
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 968
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25066
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

5-251711-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251711
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251711
    reference: chr 5
allele count: 182
allele frequency: 7.700770077007701e-3
allele num: 23634
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+128T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+128T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+128T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+128T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1962T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2762T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+128T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2797T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+553T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+128T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+128T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+128T>C
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25410
  bin: 2.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 701
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4909
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11961
  bin: 7.5e0
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Latino
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-251712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251712
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251712
    reference: chr 5
allele count: 2315
allele frequency: 1.269884805266045e-1
allele num: 18230
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2796C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1963C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+129C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+554C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+129C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+129C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+129C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+129C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+129C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+129C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2761C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+129C>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 4.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 577
  bin: 2.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 4.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 1.25e1
  variant carriers: 184
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 9.75e1
  variant carriers: 1551
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 1.75e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 25474
  bin: 2.5e0
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 5.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 11733
  bin: 7.5e0
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 7.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 3.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: FS

http://identifiers.org/exac.variant/5-251716-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251716
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251716
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 19276
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+133C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+133C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+133C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1967C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+133C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+558C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2757C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+133C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+133C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+133C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2792C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+133C>A
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 29702
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9307
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum

5-251716-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251716
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251716
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 19276
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+133C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+133C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+133C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+133C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+558C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+133C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1967C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+133C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2757C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2792C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+133C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+133C>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2980
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29702
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1062
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: QD

5-251717-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251717
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251716
    reference: chr 5
allele count: 51
allele frequency: 2.713343264524367e-3
allele num: 18796
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+135delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1969delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+135delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+135delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+135delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2755delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+135delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+135delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+560delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2790delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+135delT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+135delT
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9013
  bin: 7.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2781
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1053
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29868
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 9.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: CT
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

5-251742-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251742
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251742
    reference: chr 5
allele count: 8
allele frequency: 5.471956224350205e-4
allele num: 14620
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+159C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+159C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+159C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+159C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1993C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+159C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2766C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+159C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2731C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+584C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+159C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+159C>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4987
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26415
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2229
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

5-251743-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251743
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251743
    reference: chr 5
allele count: 1
allele frequency: 6.902263942573165e-5
allele num: 14488
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1994G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+160G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+160G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+160G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+160G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+585G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2765G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+160G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2730G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+160G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+160G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+160G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 825
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2225
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

5-251748-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251748
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251748
    reference: chr 5
allele count: 2974
allele frequency: 2.329625567914774e-1
allele num: 12766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2760C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+165C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+165C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+165C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+165C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2725C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+165C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+590C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+165C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.1999C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+165C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+165C>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4609
  bin: 7.5e0
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 4.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 103
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 3.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.25e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 2.75e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 3.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 7.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 6.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 23435
  bin: 2.5e0
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 9.25e1
  variant carriers: 42
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

5-251760-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251760
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251760
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 13622
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+177T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+602T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2748T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+177T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.2011T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2713T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+177T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+177T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+177T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+177T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+177T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+177T>C
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20931
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP

5-251768-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251768
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251768
    reference: chr 5
allele count: 2304
allele frequency: 1.894113778362381e-1
allele num: 12164
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+185T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+185T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2705T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+185T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+185T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+610T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2740T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+185T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+185T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+185T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.2019T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+185T>G
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 16409
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 8.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 9.75e1
  variant carriers: 1328
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 2.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 3.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 7.5e0
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 6.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 6.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 9.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 2.25e1
  variant carriers: 140
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 3.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: T
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum

5-251771-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251771
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251771
    reference: chr 5
allele count: 3
allele frequency: 2.280328367284889e-4
allele num: 13156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+188C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+613C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.2022C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+188C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+188C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+188C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2702C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+188C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+188C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+188C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+188C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2737C>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1396
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16658
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

5-251780-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251780
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251780
    reference: chr 5
allele count: 1
allele frequency: 7.722007722007723e-5
allele num: 12950
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+197G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+622G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2693G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2728G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+197G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+197G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+197G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+197G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+197G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.2031G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+197G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+197G>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD

5-251784-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251784
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251784
    reference: chr 5
allele count: 1501
allele frequency: 1.17338961851157e-1
allele num: 12792
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+201C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+201C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+201C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.2035C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+201C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+626C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+201C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2724C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2689C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+201C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+201C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+201C>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 1.25e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 6.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 7.5e0
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 5.75e1
  variant carriers: 135
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 5.25e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 2.25e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 2.75e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 6.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 1.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 9895
  bin: 2.5e0
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 134
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.25e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 3.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 8.25e1
  variant carriers: 40
genotype quality: GenotypeQuality
num of homozygotes: 78
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

5-251785-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251785
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251785
    reference: chr 5
allele count: 906
allele frequency: 7.624978959771082e-2
allele num: 11882
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2688G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+202G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.2036G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+202G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+202G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+202G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+202G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+627G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2723G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+202G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+202G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+202G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 9.75e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 8.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 4.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 10644
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1100
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 7.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 6.25e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 8.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff

5-251792-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251792
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251792
    reference: chr 5
allele count: 1030
allele frequency: 8.319870759289176e-2
allele num: 12380
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+209A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+209A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+209A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2681A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+209A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.2043A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+634A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2716A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+209A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+209A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+209A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+209A>G
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.25e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 4.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 8773
  bin: 2.5e0
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 3.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 7.5e0
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.75e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 4.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
num of homozygotes: 38
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

5-251805-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251805
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251805
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 12088
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2703G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.2056G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2668G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+222G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+222G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+222G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+222G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+222G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+222G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+647G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+222G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+222G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7823
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

5-251806-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 251806
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 251806
    reference: chr 5
allele count: 1
allele frequency: 8.280887711162637e-5
allele num: 12076
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1749+223T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1794+223T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000505555
  gene symbol: SDHA
  hgvsc: ENST00000505555.1:n.2057T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-2702T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1966+223T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.85+648T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.128+223T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-2667T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1380+223T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2541+223T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1650+223T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.132+223T>G
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7723
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

5-254427-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254427
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254427
    reference: chr 5
allele count: 1
allele frequency: 5.618608832453085e-5
allele num: 17798
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-81A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-2022A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-81A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-81A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-81A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-81A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-81A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-46A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-81A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.133-46A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-81A>G
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2397
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11134
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1500
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2094
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

5-254437-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254437
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254437
    reference: chr 5
allele count: 1
allele frequency: 5.54569653948536e-5
allele num: 18032
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-71A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-71A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-71A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-36A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-2012A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-71A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-71A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-71A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-71A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-71A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.133-36A>G
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4167
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1372
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11894
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1601
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum

5-254439-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254439
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254439
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 18188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-69T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-69T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.133-34T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-34T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-69T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-2010T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-69T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-69T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-69T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-69T>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-69T>A
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4812
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 970
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13358
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS

5-254442-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254442
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254442
    reference: chr 5
allele count: 19941
allele frequency: 9.947620472912302e-1
allele num: 20046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-66C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-66C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-31C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-66C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-2007C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.133-31C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-66C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-66C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-66C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-66C>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-66C>T
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 2.25e1
  variant carriers: 842
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 6.25e1
  variant carriers: 188
genotype depth: GenotypeDepth
  all individuals: 5483
  bin: 2.5e0
  variant carriers: 5273
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.25e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 492
  bin: 5.25e1
  variant carriers: 492
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 1.25e1
  variant carriers: 595
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 2.75e1
  variant carriers: 1129
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 288
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 9.75e1
  variant carriers: 600
genotype depth: GenotypeDepth
  all individuals: 1428
  bin: 3.25e1
  variant carriers: 1427
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 1376
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.25e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.75e1
  variant carriers: 617
genotype depth: GenotypeDepth
  all individuals: 2048
  bin: 7.5e0
  variant carriers: 2035
genotype depth: GenotypeDepth
  all individuals: 1183
  bin: 4.25e1
  variant carriers: 1182
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 9.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 4.75e1
  variant carriers: 804
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.75e1
  variant carriers: 149
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 2.25e1
  variant carriers: 528
num of homozygotes: 9922
population: South Asian
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD

5-254457-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254457
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254457
    reference: chr 5
allele count: 23
allele frequency: 1.137937858697803e-3
allele num: 20212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1992T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-51T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-51T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-51T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.133-16T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-51T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-51T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-51T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-16T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-51T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-51T>C
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4218
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1209
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1365
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1240
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34707
  bin: 2.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQ

5-254458-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254458
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254458
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 20248
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207-15G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-50G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-50G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-50G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-50G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1991G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-50G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.133-15G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-50G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-50G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-50G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35214
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1244
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

5-254473-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254473
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254473
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 22046
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.133A>T
  hgvsp: ENSP00000421911.1:p.Ser45Cys
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-35A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-35A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-35A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-35A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-35A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-35A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-35A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-35A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.207A>T
  hgvsp: ENSP00000422404.1:p.Ser70Cys
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1976A>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 28791
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18727
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2143
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser70Cys
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: FS
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-254477-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254477
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254477
    reference: chr 5
allele count: 2
allele frequency: 8.544087491455913e-5
allele num: 23408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-31A>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1972A>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-31A>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-31A>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-31A>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-31A>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-31A>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-31A>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.211A>C
  hgvsp: ENSP00000422404.1:p.Asn71Thr
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.137A>C
  hgvsp: ENSP00000421911.1:p.Asn46Thr
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-31A>C
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24767
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asn71Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

5-254477-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254477
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254477
    reference: chr 5
allele count: 1
allele frequency: 4.272043745727957e-5
allele num: 23408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-31A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-31A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1972A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-31A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-31A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.137A>G
  hgvsp: ENSP00000421911.1:p.Asn46Ser
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.211A>G
  hgvsp: ENSP00000422404.1:p.Asn71Ser
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-31A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-31A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-31A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-31A>G
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1251
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22830
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24767
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn71Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

5-254481-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254481
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254481
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 24500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1968G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.141G>A
  hgvsp: ENST00000509564.1:c.141G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-27G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-27G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-27G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-27G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-27G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-27G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.215G>A
  hgvsp: ENST00000515815.1:c.215G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-27G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-27G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 803
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27277
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 5.75e1
  variant carriers: 1
hgvs: p.Lys72Lys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum

5-254486-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254486
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254486
    reference: chr 5
allele count: 2
allele frequency: 7.39863865048831e-5
allele num: 27032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-22G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-22G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.146G>A
  hgvsp: ENSP00000421911.1:p.Arg49His
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1963G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-22G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.220G>A
  hgvsp: ENSP00000422404.1:p.Arg74His
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-22G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-22G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-22G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-22G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-22G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 32919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg74His
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

5-254486-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254486
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254486
    reference: chr 5
allele count: 1
allele frequency: 3.699319325244155e-5
allele num: 27032
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.146G>C
  hgvsp: ENSP00000421911.1:p.Arg49Pro
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-22G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-22G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-22G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-22G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-22G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-22G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.220G>C
  hgvsp: ENSP00000422404.1:p.Arg74Pro
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-22G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1963G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-22G>C
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Arg74Pro
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

5-254486-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254486
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254486
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 27032
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.220G>T
  hgvsp: ENSP00000422404.1:p.Arg74Leu
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-22G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1963G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.146G>T
  hgvsp: ENSP00000421911.1:p.Arg49Leu
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-22G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-22G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-22G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-22G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-22G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-22G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-22G>T
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4100
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1254
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32919
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg74Leu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

5-254496-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254496
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254496
    reference: chr 5
allele count: 1
allele frequency: 2.903769092281782e-5
allele num: 34438
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.156T>G
  hgvsp: ENST00000509564.1:c.156T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-12T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-12T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-12T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-12T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-12T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-12T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1953T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.230T>G
  hgvsp: ENST00000515815.1:c.230T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-12T>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-12T>G
  variant of: http://identifiers.org/hgnc/10680
canonical: false
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1281
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6086
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1903
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Val77Val
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/5-254502-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254502
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254502
    reference: chr 5
allele count: 1
allele frequency: 2.476718842876956e-5
allele num: 40376
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-6C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-6C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1947C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-6C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-6C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-6C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-6C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-6C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.236C>A
  hgvsp: ENST00000515815.1:c.236C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-6C>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.162C>A
  hgvsp: ENST00000509564.1:c.162C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 36648
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3518
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2250
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9093
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1795-6C>A
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD

5-254507-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254507
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254507
    reference: chr 5
allele count: 2
allele frequency: 4.263665046473949e-5
allele num: 46908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2542-1G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1795-1G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.241G>T
  hgvsp: ENSP00000422404.1:p.Arg81Met
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.167G>T
  hgvsp: ENSP00000421911.1:p.Arg56Met
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1552-1G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1651-1G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1381-1G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1967-1G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1750-1G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1942G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.202-1G>T
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 551
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 1.25e1
  variant carriers: 0
hgvs: c.1795-1G>T
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

5-254512-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254512
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254512
    reference: chr 5
allele count: 2
allele frequency: 3.773584905660378e-5
allele num: 53000
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1385G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1655G>A
  hgvsp: ENSP00000427703.1:p.Arg552Gln
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1556G>A
  hgvsp: ENSP00000426514.1:p.Arg519Gln
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.172G>A
  hgvsp: ENSP00000421911.1:p.Gly58Arg
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1799G>A
  hgvsp: ENSP00000264932.6:p.Arg600Gln
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.206G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1937G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1971G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2546G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.246G>A
  hgvsp: ENSP00000422404.1:p.Gly83Arg
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1754G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1307
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2914
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14156
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1255
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Arg600Gln
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

5-254526-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254526
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254526
    reference: chr 5
allele count: 1
allele frequency: 1.8114629374683e-5
allele num: 55204
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.220G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1768G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1669G>A
  hgvsp: ENSP00000427703.1:p.Asp557Asn
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1399G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1985G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1813G>A
  hgvsp: ENSP00000264932.6:p.Asp605Asn
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1923G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1570G>A
  hgvsp: ENSP00000426514.1:p.Asp524Asn
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.186G>A
  hgvsp: ENST00000509564.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.260G>A
  hgvsp: ENST00000515815.1:c.260G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2560G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1748
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1256
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31028
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp605Asn
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD

5-254533-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254533
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254533
    reference: chr 5
allele count: 1
allele frequency: 1.841010346478147e-5
allele num: 54318
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1820C>G
  hgvsp: ENSP00000264932.6:p.Ser607Cys
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.193C>G
  hgvsp: ENSP00000421911.1:p.Pro65Ala
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.267C>G
  hgvsp: ENSP00000422404.1:p.Pro90Ala
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1577C>G
  hgvsp: ENSP00000426514.1:p.Ser526Cys
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.227C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1406C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1676C>G
  hgvsp: ENSP00000427703.1:p.Ser559Cys
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2567C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1775C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.1992C>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1916C>G
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30919
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10339
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1467
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1156
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser607Cys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff

5-254595-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254595
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254596
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 26918
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.2056dupC
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1852dupC
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1839dupC
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2631dupC
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1740dupC
  hgvsp: ENSP00000427703.1:p.Tyr581LeufsTer14
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.257dupC
  hgvsp: ENSP00000421911.1:p.Met87TyrfsTer37
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.291dupC
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1884dupC
  hgvsp: ENSP00000264932.6:p.Tyr629LeufsTer14
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.331dupC
  hgvsp: ENSP00000422404.1:p.Met112TyrfsTer37
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1641dupC
  hgvsp: ENSP00000426514.1:p.Tyr548LeufsTer14
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1470dupC
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: frameshift
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3347
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26016
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1722
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr629LeufsTer14
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff

5-254597-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254597
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254598
    reference: chr 5
allele count: 1
allele frequency: 3.743916136278547e-5
allele num: 26710
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1471dupT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.2057dupT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1851dupT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1741dupT
  hgvsp: ENSP00000427703.1:p.Tyr581LeufsTer14
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.258dupT
  hgvsp: ENSP00000421911.1:p.Met87TyrfsTer37
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.292dupT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1885dupT
  hgvsp: ENSP00000264932.6:p.Tyr629LeufsTer14
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2632dupT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1840dupT
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.332dupT
  hgvsp: ENSP00000422404.1:p.Met112TyrfsTer37
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1642dupT
  hgvsp: ENSP00000426514.1:p.Tyr548LeufsTer14
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 26391
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18202
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3321
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr629LeufsTer14
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

5-254599-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254599
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254599
    reference: chr 5
allele count: 4108
allele frequency: 1.515308004426411e-1
allele num: 27110
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1850A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1841A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.259A>T
  hgvsp: ENSP00000421911.1:p.Met87Leu
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2633A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1643A>T
  hgvsp: ENSP00000426514.1:p.Tyr548Phe
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.293A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.333A>T
  hgvsp: ENSP00000422404.1:p.Met112Leu
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1472A>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1742A>T
  hgvsp: ENSP00000427703.1:p.Tyr581Phe
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1886A>T
  hgvsp: ENSP00000264932.6:p.Tyr629Phe
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.2058A>T
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.25e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 24367
  bin: 2.5e0
  variant carriers: 986
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 3.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 139
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 1.25e1
  variant carriers: 892
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.25e1
  variant carriers: 105
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 132
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.75e1
  variant carriers: 620
genotype depth: GenotypeDepth
  all individuals: 18012
  bin: 7.5e0
  variant carriers: 3555
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 317
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 114
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 2.25e1
  variant carriers: 268
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 2.75e1
  variant carriers: 154
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 94
genotype quality: GenotypeQuality
hgvs: p.Tyr629Phe
num of homozygotes: 500
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

5-254599-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254599
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254599
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 27110
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1850A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.333A>G
  hgvsp: ENSP00000422404.1:p.Met112Val
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1472A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.259A>G
  hgvsp: ENSP00000421911.1:p.Met87Val
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1643A>G
  hgvsp: ENSP00000426514.1:p.Tyr548Cys
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1886A>G
  hgvsp: ENSP00000264932.6:p.Tyr629Cys
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1742A>G
  hgvsp: ENSP00000427703.1:p.Tyr581Cys
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2633A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.2058A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1841A>G
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.293A>G
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24367
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3562
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1004
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 930
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr629Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum

5-254604-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254604
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254604
    reference: chr 5
allele count: 1
allele frequency: 3.950383187169155e-5
allele num: 25314
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1477G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1891G>T
  hgvsp: ENSP00000264932.6:p.Asp631Tyr
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2638G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1845G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1648G>T
  hgvsp: ENSP00000426514.1:p.Asp550Tyr
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.264G>T
  hgvsp: ENSP00000421911.1:p.Trp88Cys
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1747G>T
  hgvsp: ENSP00000427703.1:p.Asp583Tyr
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1846G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.338G>T
  hgvsp: ENSP00000422404.1:p.Trp113Cys
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.2063G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.298G>T
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31253
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2939
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp631Tyr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: DP

5-254607-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254607
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254607
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 24684
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.341G>A
  hgvsp: ENST00000515815.1:c.341G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.301G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1894G>A
  hgvsp: ENSP00000264932.6:p.Val632Ile
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1842G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1849G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2641G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1651G>A
  hgvsp: ENSP00000426514.1:p.Val551Ile
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1750G>A
  hgvsp: ENSP00000427703.1:p.Val584Ile
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.2066G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.267G>A
  hgvsp: ENST00000509564.1:c.267G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1480G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12050
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32213
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val632Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

5-254607-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254607
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254607
    reference: chr 5
allele count: 0
allele frequency: 0.0e0
allele num: 24684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1849G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1842G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1480G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.2066G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.341G>T
  hgvsp: ENST00000515815.1:c.341G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1750G>T
  hgvsp: ENSP00000427703.1:p.Val584Phe
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1651G>T
  hgvsp: ENSP00000426514.1:p.Val551Phe
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1894G>T
  hgvsp: ENSP00000264932.6:p.Val632Phe
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.267G>T
  hgvsp: ENST00000509564.1:c.267G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2641G>T
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.301G>T
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12050
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2783
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32213
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val632Phe
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

5-254608-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254608
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254608
    reference: chr 5
allele count: 1
allele frequency: 4.044652968775279e-5
allele num: 24724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.302T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1850T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1652T>C
  hgvsp: ENSP00000426514.1:p.Val551Ala
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1481T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1751T>C
  hgvsp: ENSP00000427703.1:p.Val584Ala
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1841T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1895T>C
  hgvsp: ENSP00000264932.6:p.Val632Ala
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2642T>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.268T>C
  hgvsp: ENST00000509564.1:c.268T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.342T>C
  hgvsp: ENST00000515815.1:c.342T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.2067T>C
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32336
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val632Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

5-254626-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254626
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254626
    reference: chr 5
allele count: 1
allele frequency: 4.545454545454545e-5
allele num: 22000
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000509082
  gene symbol: SDHA
  hgvsc: ENST00000509082.1:n.86-1823G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000507522
  gene symbol: SDHA
  hgvsc: ENST00000507522.1:n.315+5G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1764+5G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000426514
  ensembl transcript: ENST00000504309
  gene symbol: SDHA
  hgvsc: ENST00000504309.1:c.1665+5G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2655+5G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000421911
  ensembl transcript: ENST00000509564
  gene symbol: SDHA
  hgvsc: ENST00000509564.1:c.281+5G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.2080+5G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1863+5G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000515752
  gene symbol: SDHA
  hgvsc: ENST00000515752.1:n.1494+5G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000422404
  ensembl transcript: ENST00000515815
  gene symbol: SDHA
  hgvsc: ENST00000515815.1:c.355+5G>C
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1908+5G>C
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1964
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1068
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33936
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1908+5G>C
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: G
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD

5-254630-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 254630
    reference: chr 5
  end: Position
    type: ExactPosition
    position: 254630
    reference: chr 5
allele count: 2
allele frequency: 9.37031484257871e-5
allele num: 21344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000427703
  ensembl transcript: ENST00000510361
  gene symbol: SDHA
  hgvsc: ENST00000510361.1:c.1764+9G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000503674
  gene symbol: SDHA
  hgvsc: ENST00000503674.1:n.2080+9G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000511810
  gene symbol: SDHA
  hgvsc: ENST00000511810.1:n.2655+9G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl protein: ENSP00000264932
  ensembl transcript: ENST00000264932
  gene symbol: SDHA
  hgvsc: ENST00000264932.6:c.1908+9G>A
  variant of: http://identifiers.org/hgnc/10680
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000073578
  ensembl transcript: ENST00000514027
  gene symbol: SDHA
  hgvsc: ENST00000514027.1:n.1863+9G>A
  variant of: http://identifiers.org/hgnc/10680
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
num of homozygotes: 0
reference allele: G

GenotypeDepth
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24546
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 431
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 443
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1656
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20841
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1242
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2743
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3024
bin: 9.75e1
variant carriers: 81

GenotypeQuality
all individuals: 209
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6960
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7564
num of homozygotes: 0

South Asian
type: Population
allele count: 82
allele frequency: 5.790960451977401e-3
allele num: 14160
num of homozygotes: 1

African
type: Population
allele count: 1
allele frequency: 1.275510204081633e-4
allele num: 7840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.852949896234806e-5
allele num: 53968
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.34e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 4.062e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.009e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

MQ
type: SiteQuality
SIO_000300: 5.486e1

QD
type: SiteQuality
SIO_000300: 1.399e1

DP
type: SiteQuality
SIO_000300: 1.265935e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.5e0

GenotypeDepth
all individuals: 146
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2746
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24490
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19754
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2431
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 412
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2966
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6770
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 660
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.978630787495053e-5
allele num: 50540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6618
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.591e1

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.742e0

VQSLOD
type: SiteQuality
SIO_000300: -1.288e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.3e-3

DP
type: SiteQuality
SIO_000300: 1.17964e6

MQ
type: SiteQuality
SIO_000300: 5.749e1

GenotypeDepth
all individuals: 127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25022
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19564
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2925
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 2.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.332453438920662e-5
allele num: 13638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7176
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.069e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.106e0

MQ
type: SiteQuality
SIO_000300: 5.489e1

FS
type: SiteQuality
SIO_000300: 3.816e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.493e0

QD
type: SiteQuality
SIO_000300: 1.042e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

DP
type: SiteQuality
SIO_000300: 1.168258e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

GenotypeDepth
all individuals: 134
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2925
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 545
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2389
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19564
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25022
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 647
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 434
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7176
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.528117359413203e-4
allele num: 6544
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4848
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50016
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.489e1

MQRankSum
type: SiteQuality
SIO_000300: 5.49e-1

DP
type: SiteQuality
SIO_000300: 1.168258e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.493e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.19e-1

FS
type: SiteQuality
SIO_000300: 3.816e0

VQSLOD
type: SiteQuality
SIO_000300: -1.069e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.106e0

QD
type: SiteQuality
SIO_000300: 1.042e1

GenotypeDepth
all individuals: 335
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2966
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 152
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 434
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1659
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1353
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3142
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 636
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18827
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25541
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2368
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7092
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4772
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.475143826523086e-4
allele num: 13558
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.257e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

MQ
type: SiteQuality
SIO_000300: 5.728e1

FS
type: SiteQuality
SIO_000300: 5.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.067e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-1

DP
type: SiteQuality
SIO_000300: 1.154995e6

QD
type: SiteQuality
SIO_000300: 1.071e1

GenotypeDepth
all individuals: 120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26087
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3395
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 407
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2965
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 672
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18017
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 631
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.408504963698325e-5
allele num: 13498
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4710
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7024
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48984
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.5e-3

DP
type: SiteQuality
SIO_000300: 1.140426e6

VQSLOD
type: SiteQuality
SIO_000300: -1.321e0

MQ
type: SiteQuality
SIO_000300: 5.561e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.195e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.168e0

QD
type: SiteQuality
SIO_000300: 1.073e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.8e-2

GenotypeDepth
all individuals: 120
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28309
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13262
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 803
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 432
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 621
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5569
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1523
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 173
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 601
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2982
bin: 9.75e1
variant carriers: 20

GenotypeQuality
all individuals: 183
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 590
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.45275625612254e-5
allele num: 44916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 602
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.623921085080148e-4
allele num: 12976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 1.987712323816408e-3
allele num: 5534
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.132e1

FS
type: SiteQuality
SIO_000300: 5.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.493e0

MQRankSum
type: SiteQuality
SIO_000300: 6.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.59e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.01e0

DP
type: SiteQuality
SIO_000300: 1.050587e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.34e-2

MQ
type: SiteQuality
SIO_000300: 5.47e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeDepth
all individuals: 81
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.75e1
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GenotypeQuality
all individuals: 399
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28644
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 532
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 3.75e1
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GenotypeQuality
all individuals: 582
bin: 7.75e1
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GenotypeQuality
all individuals: 2968
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1783
bin: 2.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.5e0
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GenotypeQuality
all individuals: 6005
bin: 7.5e0
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 431
bin: 9.25e1
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GenotypeQuality
all individuals: 588
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
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variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 584
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.797172376291462e-5
allele num: 44136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4194
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12864
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.096e0

MQRankSum
type: SiteQuality
SIO_000300: 1.12e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.52e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.606e0

MQ
type: SiteQuality
SIO_000300: 5.549e1

QD
type: SiteQuality
SIO_000300: 1.841e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.2e-2

FS
type: SiteQuality
SIO_000300: 4.346e0

DP
type: SiteQuality
SIO_000300: 1.036272e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.86e-1

GenotypeDepth
all individuals: 712
bin: 9.75e1
variant carriers: 113

GenotypeQuality
all individuals: 805
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variant carriers: 12

GenotypeQuality
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bin: 1.75e1
variant carriers: 8

GenotypeQuality
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bin: 5.25e1
variant carriers: 13

GenotypeQuality
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
all individuals: 362
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variant carriers: 12

GenotypeQuality
all individuals: 136
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variant carriers: 7

GenotypeQuality
all individuals: 237
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GenotypeQuality
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bin: 3.25e1
variant carriers: 15

GenotypeQuality
all individuals: 29034
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GenotypeQuality
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variant carriers: 10

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
all individuals: 1798
bin: 2.75e1
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GenotypeQuality
all individuals: 10842
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variant carriers: 19

GenotypeQuality
all individuals: 514
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 208
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 553
bin: 7.25e1
variant carriers: 6

GenotypeQuality
all individuals: 551
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variant carriers: 6

GenotypeQuality
all individuals: 2717
bin: 9.75e1
variant carriers: 109

Other
type: Population
allele count: 3
allele frequency: 5.474452554744526e-3
allele num: 548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 118
allele frequency: 2.817574021012416e-3
allele num: 41880
num of homozygotes: 0

South Asian
type: Population
allele count: 70
allele frequency: 5.567928730512249e-3
allele num: 12572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.0e-3
allele num: 4000
num of homozygotes: 0

African
type: Population
allele count: 44
allele frequency: 7.457627118644068e-3
allele num: 5900
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.617541337167505e-3
allele num: 5564
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 1.65016501650165e-3
allele num: 4848
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.813e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.259e0

DP
type: SiteQuality
SIO_000300: 1.007896e6

MQ
type: SiteQuality
SIO_000300: 5.29e1

FS
type: SiteQuality
SIO_000300: 8.379e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.21e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -1.08e0

QD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeDepth
all individuals: 807
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1814
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8989
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 237
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GenotypeQuality
all individuals: 557
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variant carriers: 0

GenotypeQuality
all individuals: 536
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variant carriers: 0

GenotypeQuality
all individuals: 28991
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variant carriers: 0

GenotypeQuality
all individuals: 230
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variant carriers: 0

GenotypeQuality
all individuals: 812
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variant carriers: 0

GenotypeQuality
all individuals: 1532
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variant carriers: 0

GenotypeQuality
all individuals: 544
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variant carriers: 0

GenotypeQuality
all individuals: 2858
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8764
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GenotypeQuality
all individuals: 1177
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
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GenotypeQuality
all individuals: 407
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GenotypeQuality
all individuals: 986
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variant carriers: 0

GenotypeQuality
all individuals: 352
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variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5248
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.601456815816858e-4
allele num: 3844
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39876
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5576
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.69709e5

BaseQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.763e0

MQRankSum
type: SiteQuality
SIO_000300: 6.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.811e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 9.5e0

GenotypeDepth
all individuals: 77
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1105
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 7645
bin: 6.25e1
variant carriers: 19

GenotypeQuality
all individuals: 1172
bin: 1.75e1
variant carriers: 10

GenotypeQuality
all individuals: 532
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 1502
bin: 3.25e1
variant carriers: 14

GenotypeQuality
all individuals: 9927
bin: 7.5e0
variant carriers: 15

GenotypeQuality
all individuals: 269
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variant carriers: 10

GenotypeQuality
all individuals: 806
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 662
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variant carriers: 12

GenotypeQuality
all individuals: 518
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variant carriers: 5

GenotypeQuality
all individuals: 238
bin: 4.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1829
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 2713
bin: 9.75e1
variant carriers: 109

GenotypeQuality
all individuals: 411
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variant carriers: 5

GenotypeQuality
all individuals: 357
bin: 8.75e1
variant carriers: 12

GenotypeQuality
all individuals: 509
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 314
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 28565
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 804
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 236
bin: 5.25e1
variant carriers: 13

African
type: Population
allele count: 44
allele frequency: 8.419441255262151e-3
allele num: 5226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 118
allele frequency: 3.113620771544672e-3
allele num: 37898
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 2.050230650948232e-3
allele num: 3902
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.798561151079137e-3
allele num: 5004
num of homozygotes: 0

South Asian
type: Population
allele count: 70
allele frequency: 5.814919421830869e-3
allele num: 12038
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 6.147540983606557e-3
allele num: 488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.099505222649808e-3
allele num: 3638
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.187e0

FS
type: SiteQuality
SIO_000300: 8.379e0

MQRankSum
type: SiteQuality
SIO_000300: -2.834e0

VQSLOD
type: SiteQuality
SIO_000300: -2.966e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

MQ
type: SiteQuality
SIO_000300: 5.296e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.511e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.76e-2

QD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

DP
type: SiteQuality
SIO_000300: 9.41116e5

GenotypeDepth
all individuals: 144
bin: 6.75e1
variant carriers: 15

GenotypeQuality
all individuals: 513
bin: 8.25e1
variant carriers: 13

GenotypeQuality
all individuals: 10283
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GenotypeQuality
all individuals: 28648
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GenotypeQuality
all individuals: 7452
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variant carriers: 19

GenotypeQuality
all individuals: 769
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GenotypeQuality
all individuals: 261
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variant carriers: 9

GenotypeQuality
all individuals: 193
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GenotypeQuality
all individuals: 512
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GenotypeQuality
all individuals: 1491
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GenotypeQuality
all individuals: 1087
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GenotypeQuality
all individuals: 358
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GenotypeQuality
all individuals: 1818
bin: 2.75e1
variant carriers: 8

GenotypeQuality
all individuals: 694
bin: 1.25e1
variant carriers: 11

GenotypeQuality
all individuals: 776
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1081
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 219
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 413
bin: 9.25e1
variant carriers: 5

GenotypeQuality
all individuals: 537
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variant carriers: 6

GenotypeQuality
all individuals: 2710
bin: 9.75e1
variant carriers: 110

GenotypeQuality
all individuals: 248
bin: 4.75e1
variant carriers: 8

African
type: Population
allele count: 44
allele frequency: 8.583690987124463e-3
allele num: 5126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 122
allele frequency: 3.262904519925114e-3
allele num: 37390
num of homozygotes: 0

South Asian
type: Population
allele count: 70
allele frequency: 5.857740585774059e-3
allele num: 11950
num of homozygotes: 0

Latino
type: Population
allele count: 8
allele frequency: 2.115282919090428e-3
allele num: 3782
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 1.106806862202546e-3
allele num: 3614
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 6.097560975609756e-3
allele num: 492
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.824077827320632e-3
allele num: 4934
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.164e0

DP
type: SiteQuality
SIO_000300: 9.30822e5

MQRankSum
type: SiteQuality
SIO_000300: -2.753e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 1.2642e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.87e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.4e0

QD
type: SiteQuality
SIO_000300: 9.5e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.325e0

MQ
type: SiteQuality
SIO_000300: 5.302e1

GenotypeDepth
all individuals: 137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 527
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
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GenotypeQuality
all individuals: 142
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GenotypeQuality
all individuals: 989
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GenotypeQuality
all individuals: 351
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GenotypeQuality
all individuals: 1135
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GenotypeQuality
all individuals: 10563
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GenotypeQuality
all individuals: 7318
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GenotypeQuality
all individuals: 140
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GenotypeQuality
all individuals: 777
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GenotypeQuality
all individuals: 616
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variant carriers: 0

GenotypeQuality
all individuals: 351
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GenotypeQuality
all individuals: 28658
bin: 2.25e1
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GenotypeQuality
all individuals: 247
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GenotypeQuality
all individuals: 1554
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GenotypeQuality
all individuals: 204
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GenotypeQuality
all individuals: 1859
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GenotypeQuality
all individuals: 3082
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 538
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GenotypeQuality
all individuals: 524
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5156
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.663825253063399e-4
allele num: 3754
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12000
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4940
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 37638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3606
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.64e0

QD
type: SiteQuality
SIO_000300: 6.2e0

VQSLOD
type: SiteQuality
SIO_000300: -1.89e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.37e-2

DP
type: SiteQuality
SIO_000300: 9.18231e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
SIO_000300: 5.79e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

GenotypeDepth
all individuals: 202
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
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GenotypeQuality
all individuals: 28277
bin: 2.25e1
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GenotypeQuality
all individuals: 739
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GenotypeQuality
all individuals: 532
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GenotypeQuality
all individuals: 3083
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GenotypeQuality
all individuals: 1103
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variant carriers: 0

GenotypeQuality
all individuals: 11226
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GenotypeQuality
all individuals: 242
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GenotypeQuality
all individuals: 6650
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GenotypeQuality
all individuals: 421
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GenotypeQuality
all individuals: 167
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GenotypeQuality
all individuals: 511
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GenotypeQuality
all individuals: 1096
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GenotypeQuality
all individuals: 1542
bin: 3.25e1
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GenotypeQuality
all individuals: 350
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GenotypeQuality
all individuals: 192
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 172
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1865
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 1.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.733285956376756e-5
allele num: 36586
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3516
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3514
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.013693113169553e-4
allele num: 4966
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.152823920265781e-4
allele num: 4816
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11864
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.04589e5

MQ
type: SiteQuality
SIO_000300: 5.382e1

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.56e-2

QD
type: SiteQuality
SIO_000300: 1.385e1

VQSLOD
type: SiteQuality
SIO_000300: -8.813e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.1e-2

GenotypeDepth
all individuals: 806
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 538
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 703
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 130
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6411
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1854
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 3.25e1
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GenotypeQuality
all individuals: 144
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11579
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1024
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 4.25e1
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GenotypeQuality
all individuals: 421
bin: 9.25e1
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GenotypeQuality
all individuals: 28364
bin: 2.25e1
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GenotypeQuality
all individuals: 702
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.75e1
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GenotypeQuality
all individuals: 518
bin: 7.25e1
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GenotypeQuality
all individuals: 1079
bin: 6.75e1
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GenotypeQuality
all individuals: 3086
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3476
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.210526315789474e-4
allele num: 4750
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11778
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4892
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 5.824111822947001e-4
allele num: 3434
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.774079005770084e-5
allele num: 36048
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.398e1

MQRankSum
type: SiteQuality
SIO_000300: 4.39e-1

DP
type: SiteQuality
SIO_000300: 8.95674e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -9.149e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.906e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.65e-1

QD
type: SiteQuality
SIO_000300: 1.071e1

GenotypeDepth
all individuals: 480
bin: 4.75e1
variant carriers: 19

GenotypeQuality
all individuals: 197
bin: 5.75e1
variant carriers: 10

GenotypeQuality
all individuals: 446
bin: 7.25e1
variant carriers: 8

GenotypeQuality
all individuals: 939
bin: 1.25e1
variant carriers: 17

GenotypeQuality
all individuals: 387
bin: 9.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1186
bin: 3.25e1
variant carriers: 14

GenotypeQuality
all individuals: 4715
bin: 6.25e1
variant carriers: 19

GenotypeQuality
all individuals: 2375
bin: 2.5e0
variant carriers: 11

GenotypeQuality
all individuals: 474
bin: 8.25e1
variant carriers: 12

GenotypeQuality
all individuals: 197
bin: 5.25e1
variant carriers: 13

GenotypeQuality
all individuals: 204
bin: 4.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1198
bin: 1.75e1
variant carriers: 20

GenotypeQuality
all individuals: 27063
bin: 2.25e1
variant carriers: 15

GenotypeQuality
all individuals: 13482
bin: 7.5e0
variant carriers: 21

GenotypeQuality
all individuals: 1662
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 201
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 14

GenotypeQuality
all individuals: 879
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 2667
bin: 9.75e1
variant carriers: 115

GenotypeQuality
all individuals: 490
bin: 3.75e1
variant carriers: 13

GenotypeQuality
all individuals: 483
bin: 7.75e1
variant carriers: 8

Latino
type: Population
allele count: 7
allele frequency: 2.494654312188168e-3
allele num: 2806
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 1.676727028839705e-3
allele num: 2982
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 131
allele frequency: 4.084050380346677e-3
allele num: 32076
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 9.1324200913242e-3
allele num: 438
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 2.103786816269285e-3
allele num: 4278
num of homozygotes: 0

South Asian
type: Population
allele count: 81
allele frequency: 7.263271162123386e-3
allele num: 11152
num of homozygotes: 0

African
type: Population
allele count: 43
allele frequency: 1.022349025202092e-2
allele num: 4206
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.317e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.494e0

FS
type: SiteQuality
SIO_000300: 8.130000000000001e0

QD
type: SiteQuality
SIO_000300: 8.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.877e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.923e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.09e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.194e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.76e-1

DP
type: SiteQuality
SIO_000300: 8.88154e5

GenotypeDepth
all individuals: 83
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1044
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 478
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1171
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19282
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variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1688
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GenotypeQuality
all individuals: 2975
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variant carriers: 1

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 23988
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 1

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 480
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variant carriers: 0

GenotypeQuality
all individuals: 325
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GenotypeQuality
all individuals: 788
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
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variant carriers: 0

GenotypeQuality
all individuals: 394
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variant carriers: 0

GenotypeQuality
all individuals: 413
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variant carriers: 0

GenotypeQuality
all individuals: 2776
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10542
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.696871628910464e-4
allele num: 3708
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 27390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1926
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3374
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2410
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.7059e5

MQ
type: SiteQuality
SIO_000300: 5.344e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.95e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.313e0

QD
type: SiteQuality
SIO_000300: 1.009e1

GenotypeDepth
all individuals: 57
bin: 8.25e1
variant carriers: 16

GenotypeQuality
all individuals: 4668
bin: 2.5e0
variant carriers: 69

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 28

GenotypeQuality
all individuals: 1007
bin: 2.75e1
variant carriers: 46

GenotypeQuality
all individuals: 2156
bin: 1.75e1
variant carriers: 86

GenotypeQuality
all individuals: 398
bin: 3.75e1
variant carriers: 36

GenotypeQuality
all individuals: 12483
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variant carriers: 37

GenotypeQuality
all individuals: 884
bin: 3.25e1
variant carriers: 26

GenotypeQuality
all individuals: 571
bin: 6.75e1
variant carriers: 21

GenotypeQuality
all individuals: 3477
bin: 9.75e1
variant carriers: 1082

GenotypeQuality
all individuals: 1969
bin: 1.25e1
variant carriers: 123

GenotypeQuality
all individuals: 465
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variant carriers: 32

GenotypeQuality
all individuals: 456
bin: 7.75e1
variant carriers: 20

GenotypeQuality
all individuals: 141
bin: 4.25e1
variant carriers: 32

GenotypeQuality
all individuals: 21526
bin: 7.5e0
variant carriers: 193

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 16

GenotypeQuality
all individuals: 351
bin: 8.75e1
variant carriers: 38

GenotypeQuality
all individuals: 403
bin: 7.25e1
variant carriers: 27

GenotypeQuality
all individuals: 423
bin: 9.25e1
variant carriers: 48

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 26

GenotypeQuality
all individuals: 1172
bin: 6.25e1
variant carriers: 24

East Asian
type: Population
allele count: 42
allele frequency: 1.748542880932556e-2
allele num: 2402
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 495
allele frequency: 3.173483779971791e-2
allele num: 15598
num of homozygotes: 6

Other
type: Population
allele count: 10
allele frequency: 4.0e-2
allele num: 250
num of homozygotes: 0

African
type: Population
allele count: 370
allele frequency: 2.424639580602883e-1
allele num: 1526
num of homozygotes: 37

European (Finnish)
type: Population
allele count: 6
allele frequency: 5.357142857142857e-3
allele num: 1120
num of homozygotes: 0

Latino
type: Population
allele count: 50
allele frequency: 6.25e-2
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 252
allele frequency: 2.798756108396268e-2
allele num: 9004
num of homozygotes: 3

DP
type: SiteQuality
SIO_000300: 6.58988e5

FS
type: SiteQuality
SIO_000300: 1.5676e1

QD
type: SiteQuality
SIO_000300: 6.54e0

MQ
type: SiteQuality
SIO_000300: 5.253e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.114e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.33e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e0

GenotypeDepth
all individuals: 746
bin: 9.75e1
variant carriers: 160

GenotypeQuality
all individuals: 11692
bin: 2.25e1
variant carriers: 41

GenotypeQuality
all individuals: 2261
bin: 9.75e1
variant carriers: 250

GenotypeQuality
all individuals: 1540
bin: 1.25e1
variant carriers: 73

GenotypeQuality
all individuals: 390
bin: 7.25e1
variant carriers: 21

GenotypeQuality
all individuals: 1723
bin: 1.75e1
variant carriers: 72

GenotypeQuality
all individuals: 365
bin: 3.75e1
variant carriers: 20

GenotypeQuality
all individuals: 6872
bin: 2.5e0
variant carriers: 38

GenotypeQuality
all individuals: 463
bin: 7.75e1
variant carriers: 17

GenotypeQuality
all individuals: 135
bin: 4.75e1
variant carriers: 32

GenotypeQuality
all individuals: 968
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variant carriers: 41

GenotypeQuality
all individuals: 137
bin: 4.25e1
variant carriers: 16

GenotypeQuality
all individuals: 20567
bin: 7.5e0
variant carriers: 146

GenotypeQuality
all individuals: 456
bin: 8.25e1
variant carriers: 22

GenotypeQuality
all individuals: 577
bin: 6.75e1
variant carriers: 34

GenotypeQuality
all individuals: 392
bin: 9.25e1
variant carriers: 20

GenotypeQuality
all individuals: 336
bin: 8.75e1
variant carriers: 20

GenotypeQuality
all individuals: 1155
bin: 6.25e1
variant carriers: 34

GenotypeQuality
all individuals: 61
bin: 5.75e1
variant carriers: 28

GenotypeQuality
all individuals: 98
bin: 5.25e1
variant carriers: 42

GenotypeQuality
all individuals: 859
bin: 3.25e1
variant carriers: 30

European (Finnish)
type: Population
allele count: 5
allele frequency: 4.892367906066536e-3
allele num: 1022
num of homozygotes: 0

African
type: Population
allele count: 50
allele frequency: 6.218905472636816e-2
allele num: 804
num of homozygotes: 0

South Asian
type: Population
allele count: 122
allele frequency: 1.494365507104361e-2
allele num: 8164
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 7.668711656441718e-3
allele num: 652
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 1.769911504424779e-2
allele num: 226
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 4.472271914132379e-3
allele num: 2236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 149
allele frequency: 1.078303661890288e-2
allele num: 13818
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 5.83762e5

QD
type: SiteQuality
SIO_000300: 3.24e0

VQSLOD
type: SiteQuality
SIO_000300: -4.989e0

MQ
type: SiteQuality
SIO_000300: 5.344e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.89e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

FS
type: SiteQuality
SIO_000300: 2.6914e1

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.386e0

GenotypeDepth
all individuals: 39
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10750
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
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variant carriers: 0

GenotypeQuality
all individuals: 70
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GenotypeQuality
all individuals: 954
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 395
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variant carriers: 0

GenotypeQuality
all individuals: 168
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GenotypeQuality
all individuals: 2316
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GenotypeQuality
all individuals: 1060
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GenotypeQuality
all individuals: 339
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GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 1859
bin: 2.5e0
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GenotypeQuality
all individuals: 2847
bin: 1.75e1
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GenotypeQuality
all individuals: 24424
bin: 7.5e0
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GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 462
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3072
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8786
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.344300822561692e-5
allele num: 13616
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2076
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.125e1

MQRankSum
type: SiteQuality
SIO_000300: -3.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.6e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.78e-1

DP
type: SiteQuality
SIO_000300: 6.33608e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.55e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

QD
type: SiteQuality
SIO_000300: 9.399999999999999e-1

GenotypeDepth
all individuals: 40
bin: 8.25e1
variant carriers: 17

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 33

GenotypeQuality
all individuals: 369
bin: 3.75e1
variant carriers: 36

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 16

GenotypeQuality
all individuals: 463
bin: 8.25e1
variant carriers: 32

GenotypeQuality
all individuals: 10721
bin: 2.25e1
variant carriers: 37

GenotypeQuality
all individuals: 839
bin: 2.75e1
variant carriers: 46

GenotypeQuality
all individuals: 1815
bin: 1.25e1
variant carriers: 123

GenotypeQuality
all individuals: 4618
bin: 2.5e0
variant carriers: 70

GenotypeQuality
all individuals: 534
bin: 6.75e1
variant carriers: 20

GenotypeQuality
all individuals: 754
bin: 3.25e1
variant carriers: 26

GenotypeQuality
all individuals: 23076
bin: 7.5e0
variant carriers: 193

GenotypeQuality
all individuals: 2008
bin: 1.75e1
variant carriers: 86

GenotypeQuality
all individuals: 388
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variant carriers: 28

GenotypeQuality
all individuals: 1082
bin: 6.25e1
variant carriers: 25

GenotypeQuality
all individuals: 64
bin: 5.25e1
variant carriers: 25

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 47

GenotypeQuality
all individuals: 460
bin: 7.75e1
variant carriers: 21

GenotypeQuality
all individuals: 357
bin: 8.75e1
variant carriers: 38

GenotypeQuality
all individuals: 47
bin: 5.75e1
variant carriers: 28

GenotypeQuality
all individuals: 3423
bin: 9.75e1
variant carriers: 1081

Other
type: Population
allele count: 10
allele frequency: 4.347826086956522e-2
allele num: 230
num of homozygotes: 0

East Asian
type: Population
allele count: 40
allele frequency: 1.921229586935639e-2
allele num: 2082
num of homozygotes: 2

South Asian
type: Population
allele count: 249
allele frequency: 2.864044168391994e-2
allele num: 8694
num of homozygotes: 3

African
type: Population
allele count: 358
allele frequency: 2.745398773006135e-1
allele num: 1304
num of homozygotes: 36

Latino
type: Population
allele count: 52
allele frequency: 8.333333333333333e-2
allele num: 624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 479
allele frequency: 3.611823254411099e-2
allele num: 13262
num of homozygotes: 6

European (Finnish)
type: Population
allele count: 3
allele frequency: 3.409090909090909e-3
allele num: 880
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.23e0

DP
type: SiteQuality
SIO_000300: 6.30082e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.393e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.38e-1

MQ
type: SiteQuality
SIO_000300: 5.236e1

FS
type: SiteQuality
SIO_000300: 1.4045e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.521e0

QD
type: SiteQuality
SIO_000300: 6.7e0

GenotypeDepth
all individuals: 46
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1034
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2024
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2623
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1352
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9581
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25999
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2958
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 384
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1334
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.154201292705448e-4
allele num: 8664
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12202
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1880
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.494e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.56e-1

QD
type: SiteQuality
SIO_000300: 1.169e1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.56e-1

DP
type: SiteQuality
SIO_000300: 5.94901e5

FS
type: SiteQuality
SIO_000300: 3.413e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.83e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.095e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.5e0

GenotypeDepth
all individuals: 953
bin: 9.75e1
variant carriers: 143

GenotypeQuality
all individuals: 347
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 146
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 84
bin: 5.25e1
variant carriers: 5

GenotypeQuality
all individuals: 2788
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 777
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2850
bin: 1.75e1
variant carriers: 23

GenotypeQuality
all individuals: 423
bin: 9.25e1
variant carriers: 4

GenotypeQuality
all individuals: 25404
bin: 7.5e0
variant carriers: 10

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 480
bin: 7.75e1
variant carriers: 4

GenotypeQuality
all individuals: 535
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1885
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 57
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 973
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 465
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 8161
bin: 2.25e1
variant carriers: 10

GenotypeQuality
all individuals: 755
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 377
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 3023
bin: 9.75e1
variant carriers: 171

GenotypeQuality
all individuals: 367
bin: 3.75e1
variant carriers: 3

South Asian
type: Population
allele count: 104
allele frequency: 1.226993865030675e-2
allele num: 8476
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 1.363636363636364e-2
allele num: 220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 61
allele frequency: 5.586080586080586e-3
allele num: 10920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.428571428571429e-3
allele num: 700
num of homozygotes: 0

African
type: Population
allele count: 11
allele frequency: 9.874326750448833e-3
allele num: 1114
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 5.847953216374269e-4
allele num: 1710
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.024291497975709e-3
allele num: 494
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.2033e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.39e-1

QD
type: SiteQuality
SIO_000300: 2.15e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.05e0

MQ
type: SiteQuality
SIO_000300: 5.157e1

DP
type: SiteQuality
SIO_000300: 5.82854e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.754e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.67e-2

GenotypeDepth
all individuals: 45
bin: 8.25e1
variant carriers: 26

GenotypeQuality
all individuals: 318
bin: 7.25e1
variant carriers: 62

GenotypeQuality
all individuals: 265
bin: 8.75e1
variant carriers: 46

GenotypeQuality
all individuals: 356
bin: 7.75e1
variant carriers: 52

GenotypeQuality
all individuals: 24094
bin: 7.5e0
variant carriers: 78

GenotypeQuality
all individuals: 175
bin: 4.75e1
variant carriers: 86

GenotypeQuality
all individuals: 211
bin: 3.75e1
variant carriers: 86

GenotypeQuality
all individuals: 978
bin: 1.25e1
variant carriers: 77

GenotypeQuality
all individuals: 171
bin: 4.25e1
variant carriers: 67

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 69

GenotypeQuality
all individuals: 1104
bin: 1.75e1
variant carriers: 78

GenotypeQuality
all individuals: 9718
bin: 2.5e0
variant carriers: 50

GenotypeQuality
all individuals: 336
bin: 2.75e1
variant carriers: 72

GenotypeQuality
all individuals: 351
bin: 8.25e1
variant carriers: 50

GenotypeQuality
all individuals: 308
bin: 3.25e1
variant carriers: 73

GenotypeQuality
all individuals: 861
bin: 6.25e1
variant carriers: 79

GenotypeQuality
all individuals: 284
bin: 9.25e1
variant carriers: 37

GenotypeQuality
all individuals: 467
bin: 6.75e1
variant carriers: 74

GenotypeQuality
all individuals: 6733
bin: 2.25e1
variant carriers: 70

GenotypeQuality
all individuals: 146
bin: 5.75e1
variant carriers: 72

GenotypeQuality
all individuals: 2713
bin: 9.75e1
variant carriers: 1516

East Asian
type: Population
allele count: 75
allele frequency: 7.115749525616698e-2
allele num: 1054
num of homozygotes: 0

South Asian
type: Population
allele count: 1048
allele frequency: 1.348777348777349e-1
allele num: 7770
num of homozygotes: 0

Latino
type: Population
allele count: 48
allele frequency: 1.44578313253012e-1
allele num: 332
num of homozygotes: 0

Other
type: Population
allele count: 29
allele frequency: 1.611111111111111e-1
allele num: 180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 33
allele frequency: 8.68421052631579e-2
allele num: 380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 909
allele frequency: 1.196052631578947e-1
allele num: 7600
num of homozygotes: 0

African
type: Population
allele count: 173
allele frequency: 1.892778993435449e-1
allele num: 914
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.294e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.192e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.019e0

MQ
type: SiteQuality
SIO_000300: 5.316e1

DP
type: SiteQuality
SIO_000300: 8.36147e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.36e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeDepth
all individuals: 55
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8363
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29357
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3560
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 7.05366e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-1

MQ
type: SiteQuality
SIO_000300: 5.516e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

QD
type: SiteQuality
SIO_000300: 1.41e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.45e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeDepth
all individuals: 9307
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 293
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1601
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
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variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 334
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1047
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29357
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 323
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 310
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1179
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8363
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3560
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 184
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1106
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

DP
type: SiteQuality
SIO_000300: 7.05366e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

MQ
type: SiteQuality
SIO_000300: 5.516e1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.45e-2

QD
type: SiteQuality
SIO_000300: 1.41e1

GenotypeDepth
all individuals: 545
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 276
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1104
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 2

GenotypeQuality
all individuals: 273
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3581
bin: 9.75e1
variant carriers: 55

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8012
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29439
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 467
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 962
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 39
allele frequency: 4.814814814814815e-3
allele num: 8100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1060
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 5.617977528089887e-3
allele num: 178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.399491094147583e-3
allele num: 7860
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.2e-1

DP
type: SiteQuality
SIO_000300: 7.01746e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.06e-2

MQ
type: SiteQuality
SIO_000300: 5.225e1

VQSLOD
type: SiteQuality
SIO_000300: 3.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.456e0

FS
type: SiteQuality
SIO_000300: 4.457e0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.44e-1

QD
type: SiteQuality
SIO_000300: 8.640000000000001e0

GenotypeDepth
all individuals: 44
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3567
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
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variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 62
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
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GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 311
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GenotypeQuality
all individuals: 1455
bin: 2.5e0
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GenotypeQuality
all individuals: 286
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variant carriers: 1

GenotypeQuality
all individuals: 218
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
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GenotypeQuality
all individuals: 416
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GenotypeQuality
all individuals: 25792
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GenotypeQuality
all individuals: 1358
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 216
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 852
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2391
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

South Asian
type: Population
allele count: 8
allele frequency: 1.034928848641656e-3
allele num: 7730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5198
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.456e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.33e-1

DP
type: SiteQuality
SIO_000300: 6.26661e5

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.69e-2

QD
type: SiteQuality
SIO_000300: 1.114e1

VQSLOD
type: SiteQuality
SIO_000300: 8.799999999999999e-2

FS
type: SiteQuality
SIO_000300: 5.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.16e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.03e-1

GenotypeDepth
all individuals: 61
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2034
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1692
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 196
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GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7722
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.955416503715291e-4
allele num: 5114
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 490
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.723e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 5.731e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

FS
type: SiteQuality
SIO_000300: 3.922e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.94e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.21005e5

QD
type: SiteQuality
SIO_000300: 1.064e1

GenotypeDepth
all individuals: 2828
bin: 9.75e1
variant carriers: 2199

GenotypeQuality
all individuals: 262
bin: 7.25e1
variant carriers: 75

GenotypeQuality
all individuals: 300
bin: 1.75e1
variant carriers: 63

GenotypeQuality
all individuals: 302
bin: 7.75e1
variant carriers: 82

GenotypeQuality
all individuals: 127
bin: 4.25e1
variant carriers: 61

GenotypeQuality
all individuals: 223
bin: 9.25e1
variant carriers: 46

GenotypeQuality
all individuals: 19536
bin: 7.5e0
variant carriers: 63

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 75

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 77

GenotypeQuality
all individuals: 7501
bin: 2.5e0
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2208

GenotypeQuality
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bin: 2.25e1
variant carriers: 67

GenotypeQuality
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bin: 5.75e1
variant carriers: 73

GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
all individuals: 685
bin: 6.25e1
variant carriers: 67

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 59

GenotypeQuality
all individuals: 187
bin: 3.25e1
variant carriers: 66

Latino
type: Population
allele count: 51
allele frequency: 2.405660377358491e-1
allele num: 212
num of homozygotes: 0

South Asian
type: Population
allele count: 1595
allele frequency: 2.193344334433443e-1
allele num: 7272
num of homozygotes: 0

East Asian
type: Population
allele count: 86
allele frequency: 2.621951219512195e-1
allele num: 328
num of homozygotes: 0

Other
type: Population
allele count: 33
allele frequency: 2.462686567164179e-1
allele num: 134
num of homozygotes: 0

African
type: Population
allele count: 160
allele frequency: 2.73972602739726e-1
allele num: 584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 4.230769230769231e-1
allele num: 26
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1038
allele frequency: 2.465558194774347e-1
allele num: 4210
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.187e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.545e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.502e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.76e-1

QD
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 5.346e1

VQSLOD
type: SiteQuality
SIO_000300: 3.49e0

MQRankSum
type: SiteQuality
SIO_000300: -4.164e0

DP
type: SiteQuality
SIO_000300: 6.95395e5

GenotypeDepth
all individuals: 159
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variant carriers: 0

GenotypeQuality
all individuals: 168
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 218
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GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 210
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GenotypeQuality
all individuals: 788
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4564
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 5.32e0

MQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 4.85e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.729999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.706e-1

DP
type: SiteQuality
SIO_000300: 5.05229e5

GenotypeDepth
all individuals: 161
bin: 8.75e1
variant carriers: 91

GenotypeQuality
all individuals: 346
bin: 1.25e1
variant carriers: 48

GenotypeQuality
all individuals: 14732
bin: 7.5e0
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GenotypeQuality
all individuals: 642
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variant carriers: 49

GenotypeQuality
all individuals: 243
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variant carriers: 56

GenotypeQuality
all individuals: 3101
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GenotypeQuality
all individuals: 2676
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variant carriers: 1603

GenotypeQuality
all individuals: 116
bin: 4.25e1
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GenotypeQuality
all individuals: 163
bin: 2.75e1
variant carriers: 48

GenotypeQuality
all individuals: 178
bin: 3.25e1
variant carriers: 51

GenotypeQuality
all individuals: 269
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GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 62

GenotypeQuality
all individuals: 285
bin: 8.25e1
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GenotypeQuality
all individuals: 257
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variant carriers: 39

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 55

GenotypeQuality
all individuals: 380
bin: 6.75e1
variant carriers: 58

GenotypeQuality
all individuals: 647
bin: 6.25e1
variant carriers: 45

GenotypeQuality
all individuals: 206
bin: 8.75e1
variant carriers: 50

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 61

GenotypeQuality
all individuals: 309
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variant carriers: 55

GenotypeQuality
all individuals: 100
bin: 5.75e1
variant carriers: 60

European (Finnish)
type: Population
allele count: 3
allele frequency: 5.0e-1
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 31
allele frequency: 2.384615384615385e-1
allele num: 130
num of homozygotes: 0

African
type: Population
allele count: 145
allele frequency: 2.655677655677656e-1
allele num: 546
num of homozygotes: 0

Latino
type: Population
allele count: 45
allele frequency: 2.319587628865979e-1
allele num: 194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 838
allele frequency: 2.220455749867515e-1
allele num: 3774
num of homozygotes: 0

South Asian
type: Population
allele count: 1166
allele frequency: 1.609607951408062e-1
allele num: 7244
num of homozygotes: 0

East Asian
type: Population
allele count: 76
allele frequency: 2.814814814814815e-1
allele num: 270
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.65e0

MQ
type: SiteQuality
SIO_000300: 5.329e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.05e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.229e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.528e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.229e0

DP
type: SiteQuality
SIO_000300: 4.90015e5

FS
type: SiteQuality
SIO_000300: 2.486e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

GenotypeDepth
all individuals: 245
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1136
bin: 2.5e0
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GenotypeQuality
all individuals: 361
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variant carriers: 0

GenotypeQuality
all individuals: 351
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GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 55
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GenotypeQuality
all individuals: 117
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GenotypeQuality
all individuals: 329
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variant carriers: 0

GenotypeQuality
all individuals: 187
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GenotypeQuality
all individuals: 22
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GenotypeQuality
all individuals: 188
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GenotypeQuality
all individuals: 2824
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GenotypeQuality
all individuals: 931
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GenotypeQuality
all individuals: 974
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 166
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GenotypeQuality
all individuals: 15758
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GenotypeQuality
all individuals: 262
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variant carriers: 0

GenotypeQuality
all individuals: 349
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variant carriers: 0

GenotypeQuality
all individuals: 444
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variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 140
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.930817610062893e-4
allele num: 7632
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.192e1

DP
type: SiteQuality
SIO_000300: 3.36852e5

BaseQRankSum
type: SiteQuality
SIO_000300: -3.871e0

FS
type: SiteQuality
SIO_000300: 5.16e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.389999999999999e-2

MQ
type: SiteQuality
SIO_000300: 5.445e1

VQSLOD
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.51e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.69e-1

GenotypeDepth
all individuals: 807
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 91
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 427
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 263
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GenotypeQuality
all individuals: 47
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GenotypeQuality
all individuals: 136
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variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4120
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.546099290780142e-3
allele num: 282
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.386e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.628e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.75e-2

MQ
type: SiteQuality
SIO_000300: 5.437e1

VQSLOD
type: SiteQuality
SIO_000300: -7.402e-1

DP
type: SiteQuality
SIO_000300: 3.22457e5

QD
type: SiteQuality
SIO_000300: 5.1e-1

GenotypeDepth
all individuals: 645
bin: 3.75e1
variant carriers: 73

GenotypeQuality
all individuals: 2075
bin: 2.5e0
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GenotypeQuality
all individuals: 118
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GenotypeQuality
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GenotypeQuality
all individuals: 258
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variant carriers: 16

GenotypeQuality
all individuals: 399
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variant carriers: 12

GenotypeQuality
all individuals: 225
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variant carriers: 66

GenotypeQuality
all individuals: 736
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 308
bin: 1.25e1
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GenotypeQuality
all individuals: 179
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GenotypeQuality
all individuals: 76
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GenotypeQuality
all individuals: 318
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GenotypeQuality
all individuals: 28
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 350
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GenotypeQuality
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variant carriers: 27

GenotypeQuality
all individuals: 277
bin: 9.25e1
variant carriers: 16

GenotypeQuality
all individuals: 3284
bin: 9.75e1
variant carriers: 1307

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.0e-1
allele num: 10
num of homozygotes: 0

South Asian
type: Population
allele count: 659
allele frequency: 8.664212463844334e-2
allele num: 7606
num of homozygotes: 19

Latino
type: Population
allele count: 32
allele frequency: 1.720430107526882e-1
allele num: 186
num of homozygotes: 1

Other
type: Population
allele count: 15
allele frequency: 1.08695652173913e-1
allele num: 138
num of homozygotes: 1

African
type: Population
allele count: 229
allele frequency: 4.178832116788321e-1
allele num: 548
num of homozygotes: 33

East Asian
type: Population
allele count: 16
allele frequency: 5.882352941176471e-2
allele num: 272
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 549
allele frequency: 1.361607142857143e-1
allele num: 4032
num of homozygotes: 23

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

FS
type: SiteQuality
SIO_000300: 1.0748e1

QD
type: SiteQuality
SIO_000300: 8.85e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQ
type: SiteQuality
SIO_000300: 5.095e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.38e-2

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 1.53e0

DP
type: SiteQuality
SIO_000300: 3.17855e5

GenotypeDepth
all individuals: 99
bin: 9.25e1
variant carriers: 64

GenotypeQuality
all individuals: 9323
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 203
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GenotypeQuality
all individuals: 194
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GenotypeQuality
all individuals: 59
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GenotypeQuality
all individuals: 316
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GenotypeQuality
all individuals: 287
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GenotypeQuality
all individuals: 141
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variant carriers: 22

GenotypeQuality
all individuals: 58
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GenotypeQuality
all individuals: 305
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GenotypeQuality
all individuals: 1942
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GenotypeQuality
all individuals: 108
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variant carriers: 23

GenotypeQuality
all individuals: 593
bin: 2.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1050
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 79
bin: 4.75e1
variant carriers: 18

GenotypeQuality
all individuals: 349
bin: 8.25e1
variant carriers: 18

GenotypeQuality
all individuals: 536
bin: 6.75e1
variant carriers: 26

GenotypeQuality
all individuals: 1947
bin: 9.75e1
variant carriers: 667

GenotypeQuality
all individuals: 426
bin: 7.75e1
variant carriers: 24

African
type: Population
allele count: 55
allele frequency: 1.328502415458937e-1
allele num: 414
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 7.738095238095238e-2
allele num: 168
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 7.874015748031496e-3
allele num: 254
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

South Asian
type: Population
allele count: 450
allele frequency: 6.071235833783054e-2
allele num: 7412
num of homozygotes: 0

Other
type: Population
allele count: 11
allele frequency: 8.461538461538462e-2
allele num: 130
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 375
allele frequency: 1.071428571428571e-1
allele num: 3500
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.113e1

FS
type: SiteQuality
SIO_000300: 2.103e0

MQRankSum
type: SiteQuality
SIO_000300: -2.442e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 5.08e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.4e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.81e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.69e-1

DP
type: SiteQuality
SIO_000300: 2.9254e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.073e-1

GenotypeDepth
all individuals: 102
bin: 6.75e1
variant carriers: 90

GenotypeQuality
all individuals: 1981
bin: 9.75e1
variant carriers: 960

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 14

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 19

GenotypeQuality
all individuals: 7178
bin: 7.5e0
variant carriers: 102

GenotypeQuality
all individuals: 74
bin: 3.75e1
variant carriers: 9

GenotypeQuality
all individuals: 446
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 615
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 179
bin: 1.25e1
variant carriers: 40

GenotypeQuality
all individuals: 30
bin: 4.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1631
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 135
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 346
bin: 7.25e1
variant carriers: 12

GenotypeQuality
all individuals: 166
bin: 1.75e1
variant carriers: 46

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 15

GenotypeQuality
all individuals: 118
bin: 2.75e1
variant carriers: 17

GenotypeQuality
all individuals: 798
bin: 2.25e1
variant carriers: 44

GenotypeQuality
all individuals: 404
bin: 8.25e1
variant carriers: 11

GenotypeQuality
all individuals: 318
bin: 9.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1327
bin: 6.25e1
variant carriers: 9

GenotypeQuality
all individuals: 212
bin: 8.75e1
variant carriers: 14

African
type: Population
allele count: 13
allele frequency: 2.981651376146789e-2
allele num: 436
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 1.337209302325581e-1
allele num: 172
num of homozygotes: 1

Other
type: Population
allele count: 13
allele frequency: 9.420289855072464e-2
allele num: 138
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.333333333333333e-1
allele num: 6
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.937007874015748e-3
allele num: 254
num of homozygotes: 0

South Asian
type: Population
allele count: 565
allele frequency: 7.453825857519789e-2
allele num: 7580
num of homozygotes: 21

European (Non-Finnish)
type: Population
allele count: 413
allele frequency: 1.088560885608856e-1
allele num: 3794
num of homozygotes: 15

DP
type: SiteQuality
SIO_000300: 2.49799e5

FS
type: SiteQuality
SIO_000300: 1.445e0

MQ
type: SiteQuality
SIO_000300: 5.076e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
SIO_000300: 1.575e1

MQRankSum
type: SiteQuality
SIO_000300: 7.63e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.8e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

GenotypeDepth
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 459
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6382
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 365
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1237
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 144
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3588
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.16361e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.01e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.93e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

MQ
type: SiteQuality
SIO_000300: 5.26e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.438e1

VQSLOD
type: SiteQuality
SIO_000300: 4.33e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.349e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.93e-1

GenotypeDepth
all individuals: 27
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1236
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 186
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6223
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 679
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1497
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 130
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.319609395618897e-4
allele num: 7578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 234
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.574e0

MQ
type: SiteQuality
SIO_000300: 4.578e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.78e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.77e0

QD
type: SiteQuality
SIO_000300: 1.555e1

MQRankSum
type: SiteQuality
SIO_000300: -3.277e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.069e0

DP
type: SiteQuality
SIO_000300: 2.15923e5

GenotypeQuality
all individuals: 252
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5458
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1053
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 376
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5489
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 939
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 358
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 581
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1730
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 871
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1252
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.329433661260303e-4
allele num: 7522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 612
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.914e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.75e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.04e-1

DP
type: SiteQuality
SIO_000300: 2.49439e5

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

MQ
type: SiteQuality
SIO_000300: 2.9e1

QD
type: SiteQuality
SIO_000300: 8.91e0

GenotypeQuality
all individuals: 163
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2977
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 346
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8815
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 123
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 441
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3545
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1059
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 648
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7592
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1444
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 376
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 222
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.536570374923171e-4
allele num: 6508
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.503e0

FS
type: SiteQuality
SIO_000300: 4.61e0

QD
type: SiteQuality
SIO_000300: 1.218e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

DP
type: SiteQuality
SIO_000300: 2.71023e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.17e-1

MQ
type: SiteQuality
SIO_000300: 3.367e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.54e-1

GenotypeQuality
all individuals: 1573
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 453
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1189
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 37
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11683
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1065
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4040
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 481
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 98
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 380
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7652
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 224
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1272
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1460
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.2e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.87e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.142e0

DP
type: SiteQuality
SIO_000300: 2.8444e5

QD
type: SiteQuality
SIO_000300: 3.355e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 245
bin: 4.75e1
variant carriers: 245

GenotypeQuality
all individuals: 233
bin: 5.25e1
variant carriers: 233

GenotypeQuality
all individuals: 1731
bin: 1.25e1
variant carriers: 1731

GenotypeQuality
all individuals: 206
bin: 7.25e1
variant carriers: 206

GenotypeQuality
all individuals: 247
bin: 3.75e1
variant carriers: 247

GenotypeQuality
all individuals: 312
bin: 6.25e1
variant carriers: 310

GenotypeQuality
all individuals: 1344
bin: 1.75e1
variant carriers: 1343

GenotypeQuality
all individuals: 257
bin: 3.25e1
variant carriers: 257

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 145

GenotypeQuality
all individuals: 3596
bin: 7.5e0
variant carriers: 3535

GenotypeQuality
all individuals: 167
bin: 2.5e0
variant carriers: 8

GenotypeQuality
all individuals: 263
bin: 8.75e1
variant carriers: 263

GenotypeQuality
all individuals: 470
bin: 8.25e1
variant carriers: 469

GenotypeQuality
all individuals: 169
bin: 2.75e1
variant carriers: 169

GenotypeQuality
all individuals: 6242
bin: 9.75e1
variant carriers: 6241

GenotypeQuality
all individuals: 104
bin: 4.25e1
variant carriers: 104

GenotypeQuality
all individuals: 560
bin: 9.25e1
variant carriers: 560

GenotypeQuality
all individuals: 397
bin: 7.75e1
variant carriers: 397

GenotypeQuality
all individuals: 345
bin: 6.75e1
variant carriers: 345

South Asian
type: Population
allele count: 7903
allele frequency: 9.98610058124842e-1
allele num: 7914
num of homozygotes: 3947

African
type: Population
allele count: 1422
allele frequency: 9.985955056179775e-1
allele num: 1424
num of homozygotes: 710

Other
type: Population
allele count: 241
allele frequency: 9.958677685950413e-1
allele num: 242
num of homozygotes: 120

Latino
type: Population
allele count: 426
allele frequency: 1.0e0
allele num: 426
num of homozygotes: 213

European (Non-Finnish)
type: Population
allele count: 7747
allele frequency: 9.993550051599587e-1
allele num: 7752
num of homozygotes: 3871

East Asian
type: Population
allele count: 576
allele frequency: 8.727272727272727e-1
allele num: 660
num of homozygotes: 249

European (Finnish)
type: Population
allele count: 1626
allele frequency: 9.987714987714987e-1
allele num: 1628
num of homozygotes: 812

VQSLOD
type: SiteQuality
SIO_000300: 1.667e1

MQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.288e-1

MQ
type: SiteQuality
SIO_000300: 2.88e1

DP
type: SiteQuality
SIO_000300: 4.81717e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.45e-1

QD
type: SiteQuality
SIO_000300: 2.875e1

GenotypeQuality
all individuals: 529
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 370
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
variant carriers: 2

GenotypeQuality
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bin: 1.75e1
variant carriers: 3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 2

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 454
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 5695
bin: 9.75e1
variant carriers: 19

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7868
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 4.032258064516129e-3
allele num: 248
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 1.521438450899032e-2
allele num: 1446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.95e-1

VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.83e-2

DP
type: SiteQuality
SIO_000300: 5.59693e5

MQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.198e1

MQ
type: SiteQuality
SIO_000300: 3.257e1

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5687
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 434
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7890
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.191e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.89e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.29e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 5.64334e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

MQ
type: SiteQuality
SIO_000300: 3.652e1

QD
type: SiteQuality
SIO_000300: 5.88e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9020
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1698
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.987e1

DP
type: SiteQuality
SIO_000300: 6.66307e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.22e0

VQSLOD
type: SiteQuality
SIO_000300: -4.294e0

QD
type: SiteQuality
SIO_000300: 8.23e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1734
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2270
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.02757502027575e-4
allele num: 9864
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.757e1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.00647e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

FS
type: SiteQuality
SIO_000300: 6.846e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.37e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 8.5e0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.013787510137875e-4
allele num: 9864
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2270
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1734
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 256
num of homozygotes: 0

FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: 3.37e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 7.00647e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1780
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 552
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7974
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10554
num of homozygotes: 0

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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QD
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InbreedingCoeff
type: SiteQuality
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DP
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MQ
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 1.824817518248175e-3
allele num: 1096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 668
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12080
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 1902
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

DP
type: SiteQuality
SIO_000300: 7.87226e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.62e-2

FS
type: SiteQuality
SIO_000300: 6.5e-1

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 256
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GenotypeQuality
all individuals: 455
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variant carriers: 0

East Asian
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European (Non-Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

BaseQRankSum
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SIO_000300: 2.05e0

MQ
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ClippingRankSum
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VQSLOD
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QD
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FS
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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SIO_000300: 7.17e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
allele num: 8036
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 1902
num of homozygotes: 0

Other
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East Asian
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allele frequency: 0.0e0
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African
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num of homozygotes: 0

European (Non-Finnish)
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BaseQRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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DP
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VQSLOD
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FS
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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Latino
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European (Non-Finnish)
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European (Finnish)
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African
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East Asian
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ClippingRankSum
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DP
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QD
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MQRankSum
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InbreedingCoeff
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FS
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BaseQRankSum
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VQSLOD
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MQ
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
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European (Non-Finnish)
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allele num: 20078
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Latino
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European (Finnish)
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BaseQRankSum
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InbreedingCoeff
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QD
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ReadPosRankSum
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FS
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ClippingRankSum
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MQRankSum
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DP
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MQ
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VQSLOD
type: SiteQuality
SIO_000300: -5.396e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 8.301510874979246e-5
allele num: 24092
num of homozygotes: 0

South Asian
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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African
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Other
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BaseQRankSum
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FS
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VQSLOD
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MQRankSum
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InbreedingCoeff
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QD
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MQ
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DP
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

East Asian
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Latino
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African
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Other
type: Population
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European (Non-Finnish)
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allele num: 27806
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European (Finnish)
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BaseQRankSum
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ClippingRankSum
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DP
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MQRankSum
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FS
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VQSLOD
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InbreedingCoeff
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele num: 5138
num of homozygotes: 0

South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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Other
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East Asian
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ClippingRankSum
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ReadPosRankSum
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MQ
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FS
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QD
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 456
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African
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European (Non-Finnish)
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Latino
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European (Finnish)
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East Asian
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South Asian
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ClippingRankSum
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QD
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VQSLOD
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MQ
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ReadPosRankSum
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FS
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MQRankSum
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DP
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BaseQRankSum
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InbreedingCoeff
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SIO_000300: -7.3e-3

GenotypeQuality
all individuals: 227
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3092
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2984
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 825
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25968
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14248
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5688
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1792
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12414
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.135e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.9551e5

QD
type: SiteQuality
SIO_000300: 1.026e1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.68e-2

GenotypeQuality
all individuals: 26302
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 104
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3218
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2990
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 371
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1720
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13497
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5689
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 222
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8126
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1772
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.13140348024069e-5
allele num: 12298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2242
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

FS
type: SiteQuality
SIO_000300: 1.0414e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.853e1

VQSLOD
type: SiteQuality
SIO_000300: -7.068e-1

DP
type: SiteQuality
SIO_000300: 6.91432e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.82e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.0e-1

QD
type: SiteQuality
SIO_000300: 1.693e1

GenotypeQuality
all individuals: 411
bin: 2.75e1
variant carriers: 114

GenotypeQuality
all individuals: 378
bin: 9.25e1
variant carriers: 75

GenotypeQuality
all individuals: 238
bin: 4.25e1
variant carriers: 188

GenotypeQuality
all individuals: 414
bin: 3.25e1
variant carriers: 197

GenotypeQuality
all individuals: 280
bin: 7.25e1
variant carriers: 124

GenotypeQuality
all individuals: 22445
bin: 7.5e0
variant carriers: 462

GenotypeQuality
all individuals: 1811
bin: 1.75e1
variant carriers: 691

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 244

GenotypeQuality
all individuals: 537
bin: 5.75e1
variant carriers: 510

GenotypeQuality
all individuals: 5091
bin: 2.5e0
variant carriers: 20

GenotypeQuality
all individuals: 1517
bin: 1.25e1
variant carriers: 471

GenotypeQuality
all individuals: 489
bin: 3.75e1
variant carriers: 390

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 87

GenotypeQuality
all individuals: 11173
bin: 2.25e1
variant carriers: 294

GenotypeQuality
all individuals: 528
bin: 6.75e1
variant carriers: 213

GenotypeQuality
all individuals: 7220
bin: 9.75e1
variant carriers: 2843

GenotypeQuality
all individuals: 1819
bin: 6.25e1
variant carriers: 456

GenotypeQuality
all individuals: 520
bin: 8.25e1
variant carriers: 252

GenotypeQuality
all individuals: 359
bin: 5.25e1
variant carriers: 317

GenotypeQuality
all individuals: 486
bin: 7.75e1
variant carriers: 217

European (Finnish)
type: Population
allele count: 159
allele frequency: 9.013605442176871e-2
allele num: 1764
num of homozygotes: 5

South Asian
type: Population
allele count: 733
allele frequency: 9.013772749631087e-2
allele num: 8132
num of homozygotes: 42

Latino
type: Population
allele count: 200
allele frequency: 2.386634844868735e-1
allele num: 838
num of homozygotes: 16

European (Non-Finnish)
type: Population
allele count: 1569
allele frequency: 1.267571497818711e-1
allele num: 12378
num of homozygotes: 91

African
type: Population
allele count: 1336
allele frequency: 5.288994457640538e-1
allele num: 2526
num of homozygotes: 340

East Asian
type: Population
allele count: 79
allele frequency: 6.572379367720466e-2
allele num: 1202
num of homozygotes: 3

Other
type: Population
allele count: 32
allele frequency: 1.185185185185185e-1
allele num: 270
num of homozygotes: 3

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

FS
type: SiteQuality
SIO_000300: 3.72e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.936e-1

MQ
type: SiteQuality
SIO_000300: 2.427e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 7.79177e5

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

GenotypeQuality
all individuals: 11173
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7220
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1811
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 486
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 520
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 528
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 359
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5091
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1819
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22445
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1764
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 270
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.936e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

MQ
type: SiteQuality
SIO_000300: 2.427e1

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

QD
type: SiteQuality
SIO_000300: 1.013e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 7.79177e5

VQSLOD
type: SiteQuality
SIO_000300: 1.99e0

FS
type: SiteQuality
SIO_000300: 3.72e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.2e-2

GenotypeQuality
all individuals: 222
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 351
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31111
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1425
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1752
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11823
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2126
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11460
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1092
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 268
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1664
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.241927471435668e-4
allele num: 8052
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.905e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.78e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.17e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.45e-1

MQ
type: SiteQuality
SIO_000300: 2.744e1

VQSLOD
type: SiteQuality
SIO_000300: -6.602e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

FS
type: SiteQuality
SIO_000300: 1.5951e1

QD
type: SiteQuality
SIO_000300: 9.59e0

DP
type: SiteQuality
SIO_000300: 6.62951e5

GenotypeQuality
all individuals: 1351
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5481
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10337
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31937
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1012
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2066
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.50766e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

MQ
type: SiteQuality
SIO_000300: 2.161e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

QD
type: SiteQuality
SIO_000300: 1.858e1

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1411
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 213
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5481
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31937
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 279
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1492
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10337
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1012
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 596
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11098
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8024
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.858e1

VQSLOD
type: SiteQuality
SIO_000300: -4.23e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.231e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

DP
type: SiteQuality
SIO_000300: 6.50766e5

MQ
type: SiteQuality
SIO_000300: 2.161e1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.42e-1

GenotypeQuality
all individuals: 32173
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 10607
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 279
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1151
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1149
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5481
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 356
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2066
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1016
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 262
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.24595066035385e-4
allele num: 8026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11120
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.71e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.619e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.02e0

MQRankSum
type: SiteQuality
SIO_000300: -3.87e-1

DP
type: SiteQuality
SIO_000300: 6.50442e5

FS
type: SiteQuality
SIO_000300: 2.678e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.04e-2

QD
type: SiteQuality
SIO_000300: 9.220000000000001e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.01e0

VQSLOD
type: SiteQuality
SIO_000300: -4.481e0

GenotypeDepth
all individuals: 667
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5482
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 344
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3721
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 31347
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1173
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4551
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 480
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 250
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 758
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.44069640914037e-4
allele num: 1838
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.11e-2

MQ
type: SiteQuality
SIO_000300: 3.564e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.58e-1

DP
type: SiteQuality
SIO_000300: 5.93954e5

QD
type: SiteQuality
SIO_000300: 1.717e1

VQSLOD
type: SiteQuality
SIO_000300: -2.261e0