6-86227605-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227605
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227605
    reference: chr 6
allele count: 1
allele frequency: 8.380684199058012e-6
allele num: 119322
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2122-12C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1306-12C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.421-12C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2755-12C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1903-12C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1512-12C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2638-12C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1993-12C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.244-12C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2149-12C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1990-12C>A
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3787
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9070
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3846
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5920
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3764
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

6-86227613-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227613
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227613
    reference: chr 6
allele count: 1
allele frequency: 8.438960995122281e-6
allele num: 118498
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1990-20A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.244-20A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1993-20A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2638-20A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2755-20A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.421-20A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2149-20A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2122-20A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1903-20A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1306-20A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1512-20A>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

6-86227613-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227613
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227613
    reference: chr 6
allele count: 1
allele frequency: 8.438960995122281e-6
allele num: 118498
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1993-20A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2149-20A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1903-20A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2755-20A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1990-20A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2638-20A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2122-20A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1306-20A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1512-20A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.421-20A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.244-20A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1016
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4458
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7560
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5824
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6664
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4878
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8391
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

6-86227628-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227628
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227628
    reference: chr 6
allele count: 1
allele frequency: 8.51469636592759e-6
allele num: 117444
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2638-35A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1990-35A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1306-35A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.244-35A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2122-35A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1903-35A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2755-35A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.421-35A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1512-35A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2149-35A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1993-35A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5039
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4378
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2592
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6510
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6324
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

6-86227630-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227630
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227630
    reference: chr 6
allele count: 3
allele frequency: 2.551541130843029e-5
allele num: 117576
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1990-37T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1512-37T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2755-37T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.244-37T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1903-37T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1993-37T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1306-37T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2122-37T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.421-37T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2149-37T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2638-37T>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4886
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6295
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4867
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5740
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4350
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1414
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6099
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6312
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 383
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

6-86227642-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227642
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227641
    reference: chr 6
allele count: 1
allele frequency: 8.512521919743944e-6
allele num: 117474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1993-50delC
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2122-50delC
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2149-50delC
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.421-50delC
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1306-50delC
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2638-50delC
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1512-50delC
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1903-50delC
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2755-50delC
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1990-50delC
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.244-50delC
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3781
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4873
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6753
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7285
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5765
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3160
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: AG
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

6-86227643-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227643
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227643
    reference: chr 6
allele count: 1
allele frequency: 8.521952549768203e-6
allele num: 117344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.421-50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2755-50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.244-50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2149-50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1903-50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1512-50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2122-50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1990-50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1993-50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1306-50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2638-50C>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4874
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6779
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3780
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6428
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3963
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5770
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1733
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22720
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

6-86227678-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227678
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227678
    reference: chr 6
allele count: 1
allele frequency: 8.326117364950376e-6
allele num: 120104
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.420+48T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1992+48T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2121+48T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1511+48T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2148+48T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1305+48T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1902+48T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2637+48T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.243+48T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1989+48T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2754+48T>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5707
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1442
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2078
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39114
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

6-86227679-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227679
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227679
    reference: chr 6
allele count: 58
allele frequency: 4.828585224529213e-4
allele num: 120118
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2754+47A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1305+47A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.243+47A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2637+47A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1902+47A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2148+47A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2121+47A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1992+47A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1511+47A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1989+47A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.420+47A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3484
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4767
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6123
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5061
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5710
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 5484
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1445
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39123
  bin: 9.75e1
  variant carriers: 57
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

6-86227680-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227680
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227680
    reference: chr 6
allele count: 1
allele frequency: 8.327504080476999e-6
allele num: 120084
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1989+46C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1902+46C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2637+46C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.243+46C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1305+46C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2754+46C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1992+46C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2148+46C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.420+46C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2121+46C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1511+46C>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4778
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 610
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

6-86227687-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227687
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227687
    reference: chr 6
allele count: 1
allele frequency: 8.32251406504877e-6
allele num: 120156
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.243+39T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1992+39T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1511+39T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1902+39T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2148+39T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2121+39T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.420+39T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2637+39T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2754+39T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1989+39T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1305+39T>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5713
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3487
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4896
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2658
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
reference allele: A
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

6-86227689-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227689
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227689
    reference: chr 6
allele count: 1
allele frequency: 8.320436656515735e-6
allele num: 120186
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2754+37A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1511+37A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.243+37A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1989+37A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2148+37A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1992+37A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1305+37A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.420+37A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2121+37A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2637+37A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1902+37A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5488
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6279
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6130
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4951
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

6-86227699-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227699
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227699
    reference: chr 6
allele count: 5
allele frequency: 4.155101633785962e-5
allele num: 120334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1992+27A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.243+27A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1305+27A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2754+27A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1989+27A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2637+27A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1511+27A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1902+27A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.420+27A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2121+27A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2148+27A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6125
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5120
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1440
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5489
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: QD

6-86227704-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227704
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227704
    reference: chr 6
allele count: 6
allele frequency: 4.984962031205863e-5
allele num: 120362
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2754+22G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2121+22G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1902+22G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1511+22G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1989+22G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2148+22G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.243+22G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2637+22G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1992+22G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1305+22G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.420+22G>A
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5244
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6279
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 1
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

6-86227708-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227708
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227708
    reference: chr 6
allele count: 1
allele frequency: 8.304130474498016e-6
allele num: 120422
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2754+18G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2637+18G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.420+18G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1511+18G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2148+18G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1992+18G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1902+18G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1989+18G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1305+18G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.243+18G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2121+18G>A
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4327
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4919
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5492
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5157
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

6-86227709-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227709
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227709
    reference: chr 6
allele count: 2
allele frequency: 1.660495159656609e-5
allele num: 120446
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1902+17T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2754+17T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.243+17T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2121+17T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2148+17T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1305+17T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2637+17T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1992+17T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1511+17T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.420+17T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1989+17T>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4355
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39104
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ

6-86227719-TACTC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227719
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227715
    reference: chr 6
allele count: 2
allele frequency: 1.659695943703114e-5
allele num: 120504
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2121+3_2121+6delGAGT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1305+3_1305+6delGAGT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.243+3_243+6delGAGT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2148+3_2148+6delGAGT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1902+3_1902+6delGAGT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1989+3_1989+6delGAGT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1511+3_*1511+6delGAGT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2637+3_2637+6delGAGT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.420+3_420+6delGAGT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1992+3_1992+6delGAGT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2754+3_2754+6delGAGT
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.2148+3_2148+6delGAGT
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: South Asian
reference allele: TACTC
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum

6-86227734-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227734
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227734
    reference: chr 6
allele count: 1
allele frequency: 8.29531314807134e-6
allele num: 120550
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1984A>G
  hgvsp: ENSP00000427380.1:p.Met662Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1894A>G
  hgvsp: ENSP00000425630.1:p.Met632Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2140A>G
  hgvsp: ENSP00000313121.3:p.Met714Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2746A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2113A>G
  hgvsp: ENSP00000358641.2:p.Met705Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2629A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1503A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1297A>G
  hgvsp: ENSP00000420938.1:p.Met433Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1981A>G
  hgvsp: ENSP00000257769.3:p.Met661Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.235A>G
  hgvsp: ENSP00000391981.1:p.Met79Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.412A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4553
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5504
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met714Val
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

6-86227737-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227737
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227737
    reference: chr 6
allele count: 2
allele frequency: 1.659145208388638e-5
allele num: 120544
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2743C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2626C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1981C>T
  hgvsp: ENST00000505648.1:c.1981C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1294C>T
  hgvsp: ENST00000513865.1:c.1294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1891C>T
  hgvsp: ENST00000515216.1:c.1891C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.232C>T
  hgvsp: ENST00000418862.1:c.232C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2110C>T
  hgvsp: ENST00000369627.2:c.2110C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1978C>T
  hgvsp: ENST00000346348.3:c.1978C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2137C>T
  hgvsp: ENST00000314673.3:c.2137C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1500C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.409C>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5490
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu713Leu
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum

6-86227737-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227737
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227737
    reference: chr 6
allele count: 1
allele frequency: 8.295726041943191e-6
allele num: 120544
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2137C>A
  hgvsp: ENSP00000313121.3:p.Leu713Ile
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1500C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1294C>A
  hgvsp: ENSP00000420938.1:p.Leu432Ile
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.409C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1981C>A
  hgvsp: ENSP00000427380.1:p.Leu661Ile
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1891C>A
  hgvsp: ENSP00000425630.1:p.Leu631Ile
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2110C>A
  hgvsp: ENSP00000358641.2:p.Leu704Ile
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.232C>A
  hgvsp: ENSP00000391981.1:p.Leu78Ile
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1978C>A
  hgvsp: ENSP00000257769.3:p.Leu660Ile
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2626C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2743C>A
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6127
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5711
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5163
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu713Ile
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-86227759-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227759
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227759
    reference: chr 6
allele count: 1
allele frequency: 8.304268393954492e-6
allele num: 120420
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1869T>G
  hgvsp: ENSP00000425630.1:p.Ile623Met
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2604T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2115T>G
  hgvsp: ENSP00000313121.3:p.Ile705Met
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.387T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2088T>G
  hgvsp: ENSP00000358641.2:p.Ile696Met
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2721T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1959T>G
  hgvsp: ENSP00000427380.1:p.Ile653Met
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.210T>G
  hgvsp: ENSP00000391981.1:p.Ile70Met
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1478T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1272T>G
  hgvsp: ENSP00000420938.1:p.Ile424Met
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1956T>G
  hgvsp: ENSP00000257769.3:p.Ile652Met
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5485
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6126
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5148
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile705Met
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum

6-86227772-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227772
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227772
    reference: chr 6
allele count: 1
allele frequency: 8.317530026283395e-6
allele num: 120228
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2597-6T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.203-6T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-6T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1952-6T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.380-6T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2081-6T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1471-6T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1862-6T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2714-6T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2108-6T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1949-6T>A
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4918
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1023
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6124
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4023
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: c.2108-6T>A
num of homozygotes: 0
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

6-86227795-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227795
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227795
    reference: chr 6
allele count: 1
allele frequency: 8.337363058811759e-6
allele num: 119942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1952-29C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2597-29C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2081-29C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.203-29C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1862-29C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.380-29C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1949-29C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2714-29C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2108-29C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-29C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1471-29C>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

6-86227795-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227795
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227795
    reference: chr 6
allele count: 22
allele frequency: 1.834219872938587e-4
allele num: 119942
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2597-29C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2714-29C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1949-29C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.380-29C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1952-29C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2108-29C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1862-29C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.203-29C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-29C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1471-29C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2081-29C>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2959
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5709
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4916
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2076
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1105
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3474
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

6-86227803-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227803
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227803
    reference: chr 6
allele count: 1
allele frequency: 8.344459279038718e-6
allele num: 119840
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2081-37A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.203-37A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1949-37A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.380-37A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2108-37A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-37A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1862-37A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1952-37A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2597-37A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2714-37A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1471-37A>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5456
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6277
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1948
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-86227805-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227805
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227805
    reference: chr 6
allele count: 1
allele frequency: 8.347942232239753e-6
allele num: 119790
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2081-39T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.380-39T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2108-39T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1862-39T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1471-39T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2714-39T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1949-39T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.203-39T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-39T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1952-39T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2597-39T>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1558
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2328
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

6-86227808-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227808
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227808
    reference: chr 6
allele count: 1
allele frequency: 8.356452852893003e-6
allele num: 119668
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1862-42G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1949-42G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1471-42G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.203-42G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1952-42G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2108-42G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2081-42G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2597-42G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2714-42G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.380-42G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-42G>A
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5712
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6276
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2408
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4763
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5442
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-86227818-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86227818
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86227818
    reference: chr 6
allele count: 1
allele frequency: 8.36988181726874e-6
allele num: 119476
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2108-52A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2714-52A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1862-52A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.203-52A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.380-52A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1952-52A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1471-52A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2597-52A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2081-52A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-52A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1949-52A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4026
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3159
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4444
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5409
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6104
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2072
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4914
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6271
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3473
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

6-86235814-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235814
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235814
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 36518
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2713+30T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8048T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2107+30T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1470+30T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1861+30T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1951+30T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.202+30T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2596+30T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2080+30T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.379+30T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1948+30T>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 27454
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 969
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2584
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

6-86235823-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235823
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235823
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 38516
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1951+21A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8057A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1861+21A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2713+21A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.379+21A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1470+21A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2596+21A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.202+21A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2080+21A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2107+21A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1948+21A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10544
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30516
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2819
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

6-86235831-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235831
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235831
    reference: chr 6
allele count: 1
allele frequency: 2.424242424242424e-5
allele num: 41250
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2080+13A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.202+13A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1951+13A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2596+13A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1861+13A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.379+13A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2713+13A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8065A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1470+13A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1948+13A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2107+13A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32039
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 709
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7731
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7746
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

6-86235847-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235847
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235847
    reference: chr 6
allele count: 1
allele frequency: 1.873641609832871e-5
allele num: 53372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1467C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2710C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.199C>T
  hgvsp: ENSP00000391981.1:p.Leu67Phe
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2077C>T
  hgvsp: ENSP00000358641.2:p.Leu693Phe
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.376C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1858C>T
  hgvsp: ENSP00000425630.1:p.Leu620Phe
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1945C>T
  hgvsp: ENSP00000257769.3:p.Leu649Phe
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2593C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8081C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1948C>T
  hgvsp: ENSP00000427380.1:p.Leu650Phe
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2104C>T
  hgvsp: ENSP00000313121.3:p.Leu702Phe
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1015
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30371
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4684
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu702Phe
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

6-86235856-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235856
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235856
    reference: chr 6
allele count: 3
allele frequency: 4.996835337619508e-5
allele num: 60038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2068G>A
  hgvsp: ENSP00000358641.2:p.Asp690Asn
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1849G>A
  hgvsp: ENSP00000425630.1:p.Asp617Asn
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2584G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.367G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8090G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1939G>A
  hgvsp: ENSP00000427380.1:p.Asp647Asn
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2701G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1936G>A
  hgvsp: ENSP00000257769.3:p.Asp646Asn
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.190G>A
  hgvsp: ENSP00000391981.1:p.Asp64Asn
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2095G>A
  hgvsp: ENSP00000313121.3:p.Asp699Asn
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1458G>A
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28036
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17005
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1258
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3853
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp699Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD

6-86235857-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235857
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235857
    reference: chr 6
allele count: 3
allele frequency: 4.909983633387889e-5
allele num: 61100
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1457A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1848A>G
  hgvsp: ENST00000515216.1:c.1848A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1935A>G
  hgvsp: ENST00000346348.3:c.1935A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2094A>G
  hgvsp: ENST00000314673.3:c.2094A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1938A>G
  hgvsp: ENST00000505648.1:c.1938A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.189A>G
  hgvsp: ENST00000418862.1:c.189A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2583A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2067A>G
  hgvsp: ENST00000369627.2:c.2067A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8091A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2700A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.366A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17512
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27661
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro698Pro
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum

6-86235858-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235858
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235858
    reference: chr 6
allele count: 1
allele frequency: 1.613736121869352e-5
allele num: 61968
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1937C>G
  hgvsp: ENSP00000427380.1:p.Pro646Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1456C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2582C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1847C>G
  hgvsp: ENSP00000425630.1:p.Pro616Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8092C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.188C>G
  hgvsp: ENSP00000391981.1:p.Pro63Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1934C>G
  hgvsp: ENSP00000257769.3:p.Pro645Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2093C>G
  hgvsp: ENSP00000313121.3:p.Pro698Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.365C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2066C>G
  hgvsp: ENSP00000358641.2:p.Pro689Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2699C>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro698Arg
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-86235899-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235899
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235899
    reference: chr 6
allele count: 1
allele frequency: 1.12173015659353e-5
allele num: 89148
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8133C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1893C>T
  hgvsp: ENST00000346348.3:c.1893C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2052C>T
  hgvsp: ENST00000314673.3:c.2052C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.147C>T
  hgvsp: ENST00000418862.1:c.147C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1415C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1806C>T
  hgvsp: ENST00000515216.1:c.1806C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1896C>T
  hgvsp: ENST00000505648.1:c.1896C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2541C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2025C>T
  hgvsp: ENST00000369627.2:c.2025C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.324C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2658C>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30640
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6074
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15369
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser684Ser
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

6-86235904-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235904
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235904
    reference: chr 6
allele count: 1
allele frequency: 1.116021606178296e-5
allele num: 89604
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2047C>G
  hgvsp: ENSP00000313121.3:p.Leu683Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8138C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2653C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1891C>G
  hgvsp: ENSP00000427380.1:p.Leu631Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1801C>G
  hgvsp: ENSP00000425630.1:p.Leu601Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.142C>G
  hgvsp: ENSP00000391981.1:p.Leu48Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2020C>G
  hgvsp: ENSP00000358641.2:p.Leu674Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2536C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.319C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1410C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1888C>G
  hgvsp: ENSP00000257769.3:p.Leu630Val
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3161
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 663
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6191
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30315
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1894
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu683Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD

6-86235905-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235905
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235905
    reference: chr 6
allele count: 1
allele frequency: 1.118393092804259e-5
allele num: 89414
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8139T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2535T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1887T>C
  hgvsp: ENST00000346348.3:c.1887T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.318T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2019T>C
  hgvsp: ENST00000369627.2:c.2019T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2046T>C
  hgvsp: ENST00000314673.3:c.2046T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.141T>C
  hgvsp: ENST00000418862.1:c.141T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1800T>C
  hgvsp: ENST00000515216.1:c.1800T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2652T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1890T>C
  hgvsp: ENST00000505648.1:c.1890T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1409T>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15230
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29969
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6212
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1874
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe682Phe
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: BaseQRankSum

6-86235909-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235909
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235909
    reference: chr 6
allele count: 1
allele frequency: 1.116919090381093e-5
allele num: 89532
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.137A>C
  hgvsp: ENSP00000391981.1:p.Asp46Ala
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1796A>C
  hgvsp: ENSP00000425630.1:p.Asp599Ala
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1883A>C
  hgvsp: ENSP00000257769.3:p.Asp628Ala
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1405A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2531A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1886A>C
  hgvsp: ENSP00000427380.1:p.Asp629Ala
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2015A>C
  hgvsp: ENSP00000358641.2:p.Asp672Ala
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2648A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2042A>C
  hgvsp: ENSP00000313121.3:p.Asp681Ala
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.314A>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8143A>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 703
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3706
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6278
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29491
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp681Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

6-86235923-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235923
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235923
    reference: chr 6
allele count: 1
allele frequency: 1.143432125869008e-5
allele num: 87456
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1872T>C
  hgvsp: ENST00000505648.1:c.1872T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.123T>C
  hgvsp: ENST00000418862.1:c.123T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1869T>C
  hgvsp: ENST00000346348.3:c.1869T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2517T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2634T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1391T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2028T>C
  hgvsp: ENST00000314673.3:c.2028T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1782T>C
  hgvsp: ENST00000515216.1:c.1782T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.300T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.2001T>C
  hgvsp: ENST00000369627.2:c.2001T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8157T>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15939
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1782
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25848
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ser676Ser
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

6-86235927-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235927
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235927
    reference: chr 6
allele count: 1
allele frequency: 1.151834872952614e-5
allele num: 86818
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2630A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.296A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8161A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1865A>G
  hgvsp: ENSP00000257769.3:p.Asn622Ser
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1997A>G
  hgvsp: ENSP00000358641.2:p.Asn666Ser
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1868A>G
  hgvsp: ENSP00000427380.1:p.Asn623Ser
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.119A>G
  hgvsp: ENSP00000391981.1:p.Asn40Ser
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1387A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1778A>G
  hgvsp: ENSP00000425630.1:p.Asn593Ser
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2024A>G
  hgvsp: ENSP00000313121.3:p.Asn675Ser
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2513A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6274
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1847
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 953
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24874
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn675Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff

6-86235934-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235934
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235934
    reference: chr 6
allele count: 1
allele frequency: 1.181809586839368e-5
allele num: 84616
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1990C>G
  hgvsp: ENSP00000358641.2:p.Leu664Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1380C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2506C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8168C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1858C>G
  hgvsp: ENSP00000257769.3:p.Leu620Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2017C>G
  hgvsp: ENSP00000313121.3:p.Leu673Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1771C>G
  hgvsp: ENSP00000425630.1:p.Leu591Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1861C>G
  hgvsp: ENSP00000427380.1:p.Leu621Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.112C>G
  hgvsp: ENSP00000391981.1:p.Leu38Val
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.289C>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2623C>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6260
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8326
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu673Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

6-86235939-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235939
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235939
    reference: chr 6
allele count: 1
allele frequency: 1.218620521569583e-5
allele num: 82060
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1375C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1766C>A
  hgvsp: ENSP00000425630.1:p.Pro589Gln
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1985C>A
  hgvsp: ENSP00000358641.2:p.Pro662Gln
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2501C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.2012C>A
  hgvsp: ENSP00000313121.3:p.Pro671Gln
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2618C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1856C>A
  hgvsp: ENSP00000427380.1:p.Pro619Gln
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.107C>A
  hgvsp: ENSP00000391981.1:p.Pro36Gln
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8173C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.284C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1853C>A
  hgvsp: ENSP00000257769.3:p.Pro618Gln
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9955
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17927
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6048
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18903
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Pro671Gln
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-86235966-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235966
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235966
    reference: chr 6
allele count: 1
allele frequency: 1.702185606318513e-5
allele num: 58748
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2602-11G>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1359-11G>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8200G>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.268-11G>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1969-11G>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2485-11G>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1837-11G>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1996-11G>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.91-11G>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1750-11G>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1840-11G>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16027
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 641
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/6-86235966-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235966
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235967
    reference: chr 6
allele count: 59
allele frequency: 1.004289507727923e-3
allele num: 58748
alternate allele: CA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1996-12dupT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.91-12dupT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2602-12dupT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1840-12dupT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2485-12dupT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1359-12dupT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1750-12dupT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1969-12dupT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8201dupT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1837-12dupT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.268-12dupT
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6361
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16027
  bin: 1.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 20174
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 1.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6880
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 7
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-86235975-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235975
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235975
    reference: chr 6
allele count: 1
allele frequency: 1.755679623582289e-5
allele num: 56958
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2602-20G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1840-20G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1969-20G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1750-20G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.91-20G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.268-20G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1837-20G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8209G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1359-20G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1996-20G>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2485-20G>A
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1430
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3365
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1998
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-86235976-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235976
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235976
    reference: chr 6
allele count: 3
allele frequency: 5.401317921572864e-5
allele num: 55542
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1969-21C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2485-21C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2602-21C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1359-21C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1750-21C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.91-21C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1840-21C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8210C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1837-21C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1996-21C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.268-21C>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14971
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 382
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10553
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3296
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 337
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

6-86235981-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235981
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235981
    reference: chr 6
allele count: 1
allele frequency: 1.876524676299493e-5
allele num: 53290
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.91-26T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1840-26T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1750-26T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8215T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.268-26T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2602-26T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1996-26T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1837-26T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1359-26T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2485-26T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1969-26T>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3156
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14033
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/6-86235993-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235993
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235993
    reference: chr 6
allele count: 1
allele frequency: 2.265005662514156e-5
allele num: 44150
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1969-38T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2602-38T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1840-38T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.91-38T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8227T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1750-38T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1359-38T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1996-38T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.268-38T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1837-38T>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2485-38T>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2789
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10157
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15576
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1628
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18153
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

6-86235997-TAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86235997
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86235995
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 40876
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1996-44_1996-43delCT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1359-44_*1359-43delCT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1837-44_1837-43delCT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1840-44_1840-43delCT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8233_1265-8232delCT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2602-44_2602-43delCT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.268-44_268-43delCT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1750-44_1750-43delCT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.91-44_91-43delCT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2485-44_2485-43delCT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1969-44_1969-43delCT
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 8667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1618
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22835
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15670
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: TAG
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

6-86236002-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86236002
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86236002
    reference: chr 6
allele count: 3
allele frequency: 7.885606140258648e-5
allele num: 38044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.268-47C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1750-47C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2602-47C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1359-47C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1969-47C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1996-47C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8236C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1840-47C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.91-47C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1837-47C>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2485-47C>A
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23866
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15728
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

6-86236002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86236002
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86236002
    reference: chr 6
allele count: 1
allele frequency: 2.628535380086216e-5
allele num: 38044
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1996-47C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2485-47C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1750-47C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1359-47C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2602-47C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.91-47C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1840-47C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.268-47C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-8236C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1969-47C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1837-47C>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7402
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15728
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3777
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23866
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18561
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

6-86237930-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86237930
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86237930
    reference: chr 6
allele count: 1
allele frequency: 8.334166750008334e-6
allele num: 119988
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2484+50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1839+50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.90+50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1749+50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1836+50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10164C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1995+50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1358+50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1968+50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2601+50C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.267+50C>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11525
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2089
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD

6-86237951-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86237951
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86237951
    reference: chr 6
allele count: 20
allele frequency: 1.661543573980228e-4
allele num: 120370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2484+29T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1995+29T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1839+29T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1358+29T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10185T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1968+29T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.90+29T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1836+29T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1749+29T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2601+29T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.267+29T>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5073
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 530
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1237
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6870
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9923
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11586
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum

6-86237956-GAATT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86237956
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86237952
    reference: chr 6
allele count: 39
allele frequency: 3.237051792828685e-4
allele num: 120480
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1836+20_1836+23delAATT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1749+20_1749+23delAATT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1358+20_*1358+23delAATT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10194_1265-10191delAATT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1995+20_1995+23delAATT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.90+20_90+23delAATT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2484+20_2484+23delAATT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1839+20_1839+23delAATT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1968+20_1968+23delAATT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2601+20_2601+23delAATT
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.267+20_267+23delAATT
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5416
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11600
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3217
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10009
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1773
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: GAATT
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

6-86237958-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86237958
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86237958
    reference: chr 6
allele count: 1
allele frequency: 8.299581701082266e-6
allele num: 120488
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10192T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2601+22T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1995+22T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1839+22T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1836+22T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1749+22T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1358+22T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1968+22T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2484+22T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.267+22T>A
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.90+22T>A
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4938
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11611
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5566
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 755
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1753
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8745
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2090
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

6-86237975-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86237975
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86237975
    reference: chr 6
allele count: 43
allele frequency: 3.552779430233327e-4
allele num: 121032
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2484+5A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1968+5A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2601+5A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1358+5A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1749+5A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1839+5A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.267+5A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1836+5A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1995+5A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.90+5A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10209A>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 9.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4934
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6265
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8757
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.1995+5A>T
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ

6-86237980-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86237980
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86237980
    reference: chr 6
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1358G>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.267G>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1836G>C
  hgvsp: ENSP00000257769.3:p.Gln612His
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2601G>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1749G>C
  hgvsp: ENSP00000425630.1:p.Gln583His
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10214G>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.90G>C
  hgvsp: ENSP00000391981.1:p.Gln30His
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1968G>C
  hgvsp: ENSP00000358641.2:p.Gln656His
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2484G>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1995G>C
  hgvsp: ENSP00000313121.3:p.Gln665His
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1839G>C
  hgvsp: ENSP00000427380.1:p.Gln613His
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6313
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln665His
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

6-86237981-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86237981
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86237981
    reference: chr 6
allele count: 2
allele frequency: 1.650410126916539e-5
allele num: 121182
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1994A>G
  hgvsp: ENSP00000313121.3:p.Gln665Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2483A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1357A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1967A>G
  hgvsp: ENSP00000358641.2:p.Gln656Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1838A>G
  hgvsp: ENSP00000427380.1:p.Gln613Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.266A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1748A>G
  hgvsp: ENSP00000425630.1:p.Gln583Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2600A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10215A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1835A>G
  hgvsp: ENSP00000257769.3:p.Gln612Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.89A>G
  hgvsp: ENSP00000391981.1:p.Gln30Arg
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10448
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6334
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11665
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8762
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln665Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

6-86237982-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86237982
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86237982
    reference: chr 6
allele count: 2
allele frequency: 1.650328415354656e-5
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1834C>T
  hgvsp: ENSP00000257769.3:p.Gln612Ter
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.88C>T
  hgvsp: ENSP00000391981.1:p.Gln30Ter
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000506182
  gene symbol: SNX14
  hgvsc: ENST00000506182.1:n.885C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10216C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.265C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1747C>T
  hgvsp: ENSP00000425630.1:p.Gln583Ter
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1966C>T
  hgvsp: ENSP00000358641.2:p.Gln656Ter
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2482C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1837C>T
  hgvsp: ENSP00000427380.1:p.Gln613Ter
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1356C>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1993C>T
  hgvsp: ENSP00000313121.3:p.Gln665Ter
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2599C>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10450
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6342
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11671
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln665Ter
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum

6-86237997-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86237997
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86237997
    reference: chr 6
allele count: 1
allele frequency: 8.24347940778844e-6
allele num: 121308
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1951T>C
  hgvsp: ENSP00000358641.2:p.Phe651Leu
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1978T>C
  hgvsp: ENSP00000313121.3:p.Phe660Leu
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1732T>C
  hgvsp: ENSP00000425630.1:p.Phe578Leu
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1341T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2584T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1819T>C
  hgvsp: ENSP00000257769.3:p.Phe607Leu
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1822T>C
  hgvsp: ENSP00000427380.1:p.Phe608Leu
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000506182
  gene symbol: SNX14
  hgvsc: ENST00000506182.1:n.870T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2467T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.73T>C
  hgvsp: ENSP00000391981.1:p.Phe25Leu
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.250T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10231T>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6384
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10526
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe660Leu
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum

6-86238018-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86238018
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86238018
    reference: chr 6
allele count: 3
allele frequency: 2.472432378974435e-5
allele num: 121338
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10252T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1320T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000506182
  gene symbol: SNX14
  hgvsc: ENST00000506182.1:n.849T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1930T>C
  hgvsp: ENST00000369627.2:c.1930T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1957T>C
  hgvsp: ENST00000314673.3:c.1957T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2446T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.229T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1801T>C
  hgvsp: ENST00000505648.1:c.1801T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1798T>C
  hgvsp: ENST00000346348.3:c.1798T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.52T>C
  hgvsp: ENST00000418862.1:c.52T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2563T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1711T>C
  hgvsp: ENST00000515216.1:c.1711T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2087
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8767
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu653Leu
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: African
reference allele: A
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

6-86238021-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86238021
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86238021
    reference: chr 6
allele count: 1
allele frequency: 8.241305422778968e-6
allele num: 121340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10255T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1954T>C
  hgvsp: ENSP00000313121.3:p.Phe652Leu
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2443T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1317T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1927T>C
  hgvsp: ENSP00000358641.2:p.Phe643Leu
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.49T>C
  hgvsp: ENSP00000391981.1:p.Phe17Leu
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1708T>C
  hgvsp: ENSP00000425630.1:p.Phe570Leu
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2560T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1795T>C
  hgvsp: ENSP00000257769.3:p.Phe599Leu
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1798T>C
  hgvsp: ENSP00000427380.1:p.Phe600Leu
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.226T>C
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000506182
  gene symbol: SNX14
  hgvsc: ENST00000506182.1:n.846T>C
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11687
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Phe652Leu
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP

6-86238022-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86238022
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86238022
    reference: chr 6
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1926A>T
  hgvsp: ENSP00000358641.2:p.Glu642Asp
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.48A>T
  hgvsp: ENSP00000391981.1:p.Glu16Asp
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1953A>T
  hgvsp: ENSP00000313121.3:p.Glu651Asp
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1794A>T
  hgvsp: ENSP00000257769.3:p.Glu598Asp
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2559A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1316A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.225A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1797A>T
  hgvsp: ENSP00000427380.1:p.Glu599Asp
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1707A>T
  hgvsp: ENSP00000425630.1:p.Glu569Asp
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000506182
  gene symbol: SNX14
  hgvsc: ENST00000506182.1:n.845A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10256A>T
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2442A>T
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11688
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6389
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2086
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6874
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu651Asp
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: T
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ

6-86238032-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86238032
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86238032
    reference: chr 6
allele count: 1
allele frequency: 8.241577108195424e-6
allele num: 121336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.215A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000506182
  gene symbol: SNX14
  hgvsc: ENST00000506182.1:n.835A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2549A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1784A>G
  hgvsp: ENSP00000257769.3:p.Lys595Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000391981
  ensembl transcript: ENST00000418862
  gene symbol: SNX14
  hgvsc: ENST00000418862.1:c.38A>G
  hgvsp: ENSP00000391981.1:p.Lys13Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1697A>G
  hgvsp: ENSP00000425630.1:p.Lys566Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1787A>G
  hgvsp: ENSP00000427380.1:p.Lys596Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1916A>G
  hgvsp: ENSP00000358641.2:p.Lys639Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10266A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1943A>G
  hgvsp: ENSP00000313121.3:p.Lys648Arg
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2432A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1306A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3219
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys648Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

6-86238081-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86238081
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86238080
    reference: chr 6
allele count: 1
allele frequency: 8.274309922552459e-6
allele num: 120856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.167-2delA
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2501-2delA
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1649-2delA
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10316delA
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000506182
  gene symbol: SNX14
  hgvsc: ENST00000506182.1:n.787-2delA
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1736-2delA
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1868-2delA
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2384-2delA
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1895-2delA
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1739-2delA
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1258-2delA
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: splice acceptor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2085
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4936
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6873
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8753
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6551
  bin: 6.75e1
  variant carriers: 0
hgvs: c.1895-2delA
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: CT
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD

6-86238091-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86238091
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86238091
    reference: chr 6
allele count: 1
allele frequency: 8.297102651754007e-6
allele num: 120524
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1868-11A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1258-11A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1739-11A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1649-11A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2501-11A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1736-11A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1895-11A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.167-11A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2384-11A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10325A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000506182
  gene symbol: SNX14
  hgvsc: ENST00000506182.1:n.787-11A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4932
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11500
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8703
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10197
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 848
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1744
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: QD

6-86238095-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 86238095
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 86238095
    reference: chr 6
allele count: 1
allele frequency: 8.311308366163002e-6
allele num: 120318
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503491
  gene symbol: SNX14
  hgvsc: ENST00000503491.1:n.2384-15A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358649
  ensembl transcript: ENST00000369635
  gene symbol: SNX14
  hgvsc: ENST00000369635.2:c.*1258-15A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000358641
  ensembl transcript: ENST00000369627
  gene symbol: SNX14
  hgvsc: ENST00000369627.2:c.1868-15A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000508980
  gene symbol: SNX14
  hgvsc: ENST00000508980.1:n.2501-15A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000503608
  gene symbol: SNX14
  hgvsc: ENST00000503608.1:n.167-15A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl transcript: ENST00000506182
  gene symbol: SNX14
  hgvsc: ENST00000506182.1:n.787-15A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000427380
  ensembl transcript: ENST00000505648
  gene symbol: SNX14
  hgvsc: ENST00000505648.1:c.1739-15A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000425630
  ensembl transcript: ENST00000515216
  gene symbol: SNX14
  hgvsc: ENST00000515216.1:c.1649-15A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000313121
  ensembl transcript: ENST00000314673
  gene symbol: SNX14
  hgvsc: ENST00000314673.3:c.1895-15A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000420938
  ensembl transcript: ENST00000513865
  gene symbol: SNX14
  hgvsc: ENST00000513865.1:c.1265-10329A>G
  variant of: http://identifiers.org/hgnc/14977
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000135317
  ensembl protein: ENSP00000257769
  ensembl transcript: ENST00000346348
  gene symbol: SNX14
  hgvsc: ENST00000346348.3:c.1736-15A>G
  variant of: http://identifiers.org/hgnc/14977
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2083
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 686
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6854
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8696
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11461
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
reference allele: T

GenotypeQuality
all individuals: 50
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22699
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2920
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1117
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2948
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4457
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 542
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3053
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2035
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1701
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.008878127522195e-4
allele num: 9912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15994
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -5.233e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.499e0

QD
type: SiteQuality
SIO_000300: 1.172e1

FS
type: SiteQuality
SIO_000300: 6.746e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.902e0

DP
type: SiteQuality
SIO_000300: 2.493617e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 2933
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22696
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 968
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2824
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8391
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3891
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.026694045174538e-4
allele num: 9740
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 1.459e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

MQRankSum
type: SiteQuality
SIO_000300: 7.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

DP
type: SiteQuality
SIO_000300: 2.438978e6

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeQuality
all individuals: 186
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 342
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2824
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1974
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 386
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3891
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 968
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2933
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22696
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1698
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2345
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3036
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9740
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.295643414756988e-5
allele num: 15884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65452
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

MQRankSum
type: SiteQuality
SIO_000300: 7.56e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.42e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.96e-1

DP
type: SiteQuality
SIO_000300: 2.438978e6

VQSLOD
type: SiteQuality
SIO_000300: 1.68e0

QD
type: SiteQuality
SIO_000300: 1.459e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.01e-1

GenotypeQuality
all individuals: 1458
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3001
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2950
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 96
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3488
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22700
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 847
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2261
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3016
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1382
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2423
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2830
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 394
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1863
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9622
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11488
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.543066999969139e-5
allele num: 64806
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15666
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.05e0

VQSLOD
type: SiteQuality
SIO_000300: -5.41e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.77e0

DP
type: SiteQuality
SIO_000300: 2.409718e6

MQ
type: SiteQuality
SIO_000300: 5.925e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

FS
type: SiteQuality
SIO_000300: 1.008e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.21e0

QD
type: SiteQuality
SIO_000300: 1.374e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.443e0

GenotypeQuality
all individuals: 3042
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3558
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3044
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1241
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2417
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2963
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2193
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 642
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1887
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22704
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 8803
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2831
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.74246384387524e-4
allele num: 11478
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.366182836771072e-5
allele num: 15708
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64882
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8396
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.410545e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.17e0

FS
type: SiteQuality
SIO_000300: 5.482e0

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.354e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.727e1

GenotypeQuality
all individuals: 3769
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1254
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 736
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1744
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2943
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22720
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3032
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10403
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2063
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 534
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64802
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.377551020408164e-5
allele num: 15680
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11482
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.92e-1

DP
type: SiteQuality
SIO_000300: 2.422888e6

MQ
type: SiteQuality
SIO_000300: 6.013e1

VQSLOD
type: SiteQuality
SIO_000300: 3.82e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.15e-1

FS
type: SiteQuality
SIO_000300: 1.674e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: -9.2e-2

QD
type: SiteQuality
SIO_000300: 1.515e1

GenotypeQuality
all individuals: 133
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2907
bin: 2.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.03777501037775e-4
allele num: 9636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64764
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8398
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6564
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.149999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e0

FS
type: SiteQuality
SIO_000300: 2.804e0

VQSLOD
type: SiteQuality
SIO_000300: 1.03e0

QD
type: SiteQuality
SIO_000300: 1.3e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.51e-1

DP
type: SiteQuality
SIO_000300: 2.424619e6

GenotypeQuality
all individuals: 674
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.656509695290859e-5
allele num: 11552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9928
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66256
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.93e0

VQSLOD
type: SiteQuality
SIO_000300: -8.828e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.0e-3

QD
type: SiteQuality
SIO_000300: 1.569e1

DP
type: SiteQuality
SIO_000300: 3.120273e6

FS
type: SiteQuality
SIO_000300: 7.989e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.44e-1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1452
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variant carriers: 0

GenotypeQuality
all individuals: 643
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 7
allele frequency: 1.059322033898305e-3
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 51
allele frequency: 7.694861039862398e-4
allele num: 66278
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16228
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.5e-3

QD
type: SiteQuality
SIO_000300: 1.595e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.42e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.51e0

DP
type: SiteQuality
SIO_000300: 3.120814e6

GenotypeQuality
all individuals: 152
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 518
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 490
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 39104
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.164468006411046e-5
allele num: 16222
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.45e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.830000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.13e-1

FS
type: SiteQuality
SIO_000300: 4.909e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.69e0

DP
type: SiteQuality
SIO_000300: 3.120334e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.847e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

QD
type: SiteQuality
SIO_000300: 7.8e0

GenotypeQuality
all individuals: 44
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66310
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.159152500615915e-5
allele num: 16236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.345e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.444e0

MQ
type: SiteQuality
SIO_000300: 5.889e1

DP
type: SiteQuality
SIO_000300: 3.124525e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.2e0

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.452e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.507749834147518e-5
allele num: 66324
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.445e0

MQ
type: SiteQuality
SIO_000300: 5.962e1

MQRankSum
type: SiteQuality
SIO_000300: 6.64e-1

QD
type: SiteQuality
SIO_000300: 1.124e1

DP
type: SiteQuality
SIO_000300: 3.125636e6

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 3.77e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 7.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1456
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.455795677799607e-4
allele num: 16288
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506160195198361e-5
allele num: 66394
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.32e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

FS
type: SiteQuality
SIO_000300: 2.055e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-3

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

MQ
type: SiteQuality
SIO_000300: 5.981e1

QD
type: SiteQuality
SIO_000300: 1.209e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 3.683241252302026e-4
allele num: 16290
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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MQ
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InbreedingCoeff
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DP
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VQSLOD
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FS
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SIO_000300: 9.57e-1

MQRankSum
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ClippingRankSum
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SIO_000300: 1.6e0

ReadPosRankSum
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SIO_000300: -8.25e-1

QD
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SIO_000300: 1.424e1

BaseQRankSum
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SIO_000300: -1.288e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66418
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11560
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South Asian
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allele count: 1
allele frequency: 6.125949522175937e-5
allele num: 16324
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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ClippingRankSum
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ReadPosRankSum
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QD
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MQ
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InbreedingCoeff
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SIO_000300: -5.0e-4

MQRankSum
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FS
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DP
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BaseQRankSum
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SIO_000300: -3.034e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505389293671343e-5
allele num: 66428
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.002004008016032e-4
allele num: 9980
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Other
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num of homozygotes: 0

MQRankSum
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SIO_000300: -2.85e-1

ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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ReadPosRankSum
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QD
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FS
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BaseQRankSum
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SIO_000300: -1.021e0

MQ
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SIO_000300: 5.951e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.009962977455377e-5
allele num: 66446
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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ClippingRankSum
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SIO_000300: -5.82e-1

QD
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DP
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQRankSum
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FS
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MQ
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BaseQRankSum
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SIO_000300: 1.32e0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 1.504755025881786e-5
allele num: 66456
num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9984
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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South Asian
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MQRankSum
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VQSLOD
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BaseQRankSum
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DP
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QD
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ClippingRankSum
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FS
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.009510051763573e-5
allele num: 66456
num of homozygotes: 0

Other
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East Asian
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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QD
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MQRankSum
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DP
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FS
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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MQ
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ReadPosRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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East Asian
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South Asian
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Latino
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African
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQ
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FS
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MQRankSum
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QD
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele num: 900
num of homozygotes: 0

South Asian
type: Population
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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East Asian
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allele count: 1
allele frequency: 1.158480074142725e-4
allele num: 8632
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.71e-1

QD
type: SiteQuality
SIO_000300: 1.191e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.65e0

VQSLOD
type: SiteQuality
SIO_000300: 2.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

DP
type: SiteQuality
SIO_000300: 3.138543e6

FS
type: SiteQuality
SIO_000300: 2.288e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e0

GenotypeDepth
all individuals: 5470
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 627
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2200
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1214
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.129704548240775e-5
allele num: 16314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9878
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
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SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.444e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 3.133864e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

FS
type: SiteQuality
SIO_000300: 2.817e0

VQSLOD
type: SiteQuality
SIO_000300: 8.52e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.97e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66274
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.014816318246397e-4
allele num: 9854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.217e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

MQ
type: SiteQuality
SIO_000300: 5.981e1

FS
type: SiteQuality
SIO_000300: 3.084e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -4.51e0

DP
type: SiteQuality
SIO_000300: 3.112794e6

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 22

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66274
num of homozygotes: 0

East Asian
type: Population
allele count: 22
allele frequency: 2.553981889946598e-3
allele num: 8614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.084e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.3e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.13e-1

MQ
type: SiteQuality
SIO_000300: 5.981e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.51e0

DP
type: SiteQuality
SIO_000300: 3.112794e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

QD
type: SiteQuality
SIO_000300: 1.217e1

GenotypeQuality
all individuals: 981
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16068
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66268
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.016053647632595e-4
allele num: 9842
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.658e-1

QD
type: SiteQuality
SIO_000300: 1.698e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e0

DP
type: SiteQuality
SIO_000300: 3.101897e6

MQRankSum
type: SiteQuality
SIO_000300: -3.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.1e-3

FS
type: SiteQuality
SIO_000300: 1.413e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.35e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.309e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50961625554784e-5
allele num: 66242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9834
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16056
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.2e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 6.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.5e-1

QD
type: SiteQuality
SIO_000300: 1.559e1

VQSLOD
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 3.099166e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.6e-3

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66214
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9824
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.26017278076875e-5
allele num: 15974
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
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QD
type: SiteQuality
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BaseQRankSum
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DP
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8596
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.511578692786746e-5
allele num: 66156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9796
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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MQ
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 1928
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4098
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2226
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

QD
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SIO_000300: 5.25e0

BaseQRankSum
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SIO_000300: 1.92e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.26e-2

MQRankSum
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SIO_000300: -9.56e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -2.028e0

DP
type: SiteQuality
SIO_000300: 6.64228e5

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 2088
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1996
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18224
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 4272
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2326
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.64e0

MQRankSum
type: SiteQuality
SIO_000300: 6.63e-1

BaseQRankSum
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SIO_000300: 2.64e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.25e-1

QD
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SIO_000300: 1.269e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

DP
type: SiteQuality
SIO_000300: 7.04878e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2318
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 392
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 4.201680672268908e-4
allele num: 2380
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.42557e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

MQRankSum
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SIO_000300: 1.07e0

ClippingRankSum
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SIO_000300: -2.348e0

FS
type: SiteQuality
SIO_000300: 1.83e0

VQSLOD
type: SiteQuality
SIO_000300: 6.75e-1

ReadPosRankSum
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SIO_000300: 9.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.45e0

QD
type: SiteQuality
SIO_000300: 1.204e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3856
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25958
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5790
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.771350400625366e-5
allele num: 10234
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -8.72e-2

BaseQRankSum
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SIO_000300: -3.64e0

MQRankSum
type: SiteQuality
SIO_000300: -8.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.976e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.55e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.09e0

DP
type: SiteQuality
SIO_000300: 8.63132e5

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.019437270626614e-4
allele num: 29428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4798
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.316e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

MQ
type: SiteQuality
SIO_000300: 5.962e1

ReadPosRankSum
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SIO_000300: -1.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.46e-1

FS
type: SiteQuality
SIO_000300: 8.81e-1

DP
type: SiteQuality
SIO_000300: 9.19541e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.26e0

QD
type: SiteQuality
SIO_000300: 1.14e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6444
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.000934205258241e-4
allele num: 29972
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3704
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4744
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4986
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.9e-3

FS
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DP
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QD
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BaseQRankSum
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ReadPosRankSum
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SIO_000300: 7.59e-1

MQ
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SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.74e0

MQRankSum
type: SiteQuality
SIO_000300: 8.69e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6522
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5126
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4808
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.282778543759438e-5
allele num: 30462
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.691e-1

FS
type: SiteQuality
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MQRankSum
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MQ
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SIO_000300: 5.98e1

InbreedingCoeff
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SIO_000300: -6.2e-3

DP
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BaseQRankSum
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QD
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 706
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.759155803848541e-5
allele num: 12888
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46210
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5246
num of homozygotes: 0

InbreedingCoeff
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SIO_000300: -2.8e-3

FS
type: SiteQuality
SIO_000300: 1.572e0

QD
type: SiteQuality
SIO_000300: 1.924e1

ClippingRankSum
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SIO_000300: 1.38e0

DP
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SIO_000300: 1.164906e6

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.802e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.324e0

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 435
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.14795085488444e-5
allele num: 46556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7416
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5252
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 688
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.165384e6

QD
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -8.6e-1

FS
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SIO_000300: 1.392e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -9.57e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: -1.882e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12918
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.154708037060978e-5
allele num: 46410
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8088
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5248
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.08e-1

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -7.3e-2

FS
type: SiteQuality
SIO_000300: 7.79e-1

MQ
type: SiteQuality
SIO_000300: 5.941e1

QD
type: SiteQuality
SIO_000300: 1.059e1

DP
type: SiteQuality
SIO_000300: 1.161878e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46520
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7394
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5276
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8656
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.747133560582585e-5
allele num: 12908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.6e-1

DP
type: SiteQuality
SIO_000300: 1.159079e6

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 9.48e0

VQSLOD
type: SiteQuality
SIO_000300: -1.097e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.82e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-1

MQ
type: SiteQuality
SIO_000300: 5.884e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12782
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8376
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.382361072712192e-4
allele num: 7234
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5132
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 4.846e0

MQRankSum
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SIO_000300: -7.05e-1

VQSLOD
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.54e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.42e-1

ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.120657e6

QD
type: SiteQuality
SIO_000300: 6.96e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.394700139470014e-4
allele num: 7170
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12744
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8278
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7944
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 680
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

ReadPosRankSum
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SIO_000300: 1.37e-1

MQRankSum
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FS
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ClippingRankSum
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MQ
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VQSLOD
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DP
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QD
type: SiteQuality
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InbreedingCoeff
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SIO_000300: -2.6e-3

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6966
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 666
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.286864251738017e-5
allele num: 43728
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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QD
type: SiteQuality
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ReadPosRankSum
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DP
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VQSLOD
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InbreedingCoeff
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FS
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.915e1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7568
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.36630383341221e-5
allele num: 42260
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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East Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: -1.65e0

MQRankSum
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DP
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FS
type: SiteQuality
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QD
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InbreedingCoeff
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ReadPosRankSum
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MQ
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BaseQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 855
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7447
bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 1813
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7264
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10730
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.409478349812479e-5
allele num: 29330
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4328
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 494
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 8.35511e5

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

FS
type: SiteQuality
SIO_000300: 8.71e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.19e-1

QD
type: SiteQuality
SIO_000300: 5.84e0

GenotypeQuality
all individuals: 7447
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 7264
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 215
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2013
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 28451
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3699
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1435
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 201
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 641
bin: 3.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1414
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 165
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 340
bin: 8.75e1
variant carriers: 3

GenotypeQuality
all individuals: 855
bin: 7.75e1
variant carriers: 1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 9.75e1
variant carriers: 26

GenotypeQuality
all individuals: 676
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1403
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 3.25e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 3.750426184793727e-4
allele num: 29330
num of homozygotes: 0

East Asian
type: Population
allele count: 28
allele frequency: 6.469500924214418e-3
allele num: 4328
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.727865796831314e-4
allele num: 10730
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.844141069397042e-4
allele num: 3516
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 1.373154823206317e-3
allele num: 5826
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 1.326259946949602e-3
allele num: 4524
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.024291497975709e-3
allele num: 494
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.19e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.68e0

DP
type: SiteQuality
SIO_000300: 8.35511e5

QD
type: SiteQuality
SIO_000300: 5.84e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.67e-1

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1372
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 430
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GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 1474
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
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variant carriers: 0

GenotypeQuality
all individuals: 339
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GenotypeQuality
all individuals: 560
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GenotypeQuality
all individuals: 1439
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variant carriers: 0

GenotypeQuality
all individuals: 1790
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variant carriers: 1

GenotypeQuality
all individuals: 29549
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variant carriers: 0

GenotypeQuality
all individuals: 10420
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variant carriers: 0

GenotypeQuality
all individuals: 865
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
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variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6340
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28146
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4320
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.391435011269723e-5
allele num: 10648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4158
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3454
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.379999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.986e1

DP
type: SiteQuality
SIO_000300: 7.63364e5

VQSLOD
type: SiteQuality
SIO_000300: -7.423999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.16e-2

FS
type: SiteQuality
SIO_000300: 5.253e0

MQRankSum
type: SiteQuality
SIO_000300: -2.3e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.243e0

GenotypeQuality
all individuals: 430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6009
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1975
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variant carriers: 0

GenotypeQuality
all individuals: 11347
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variant carriers: 0

GenotypeQuality
all individuals: 686
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variant carriers: 0

GenotypeQuality
all individuals: 98
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variant carriers: 0

GenotypeQuality
all individuals: 1375
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28622
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variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1651
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1710
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 860
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 487
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1793
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3372
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.661662394727206e-5
allele num: 27310
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.497502497502498e-4
allele num: 4004
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.402691013935608e-4
allele num: 4162
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.92e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.015e1

VQSLOD
type: SiteQuality
SIO_000300: -3.01e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 7.50982e5

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

GenotypeQuality
all individuals: 433
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1376
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26794
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variant carriers: 0

GenotypeQuality
all individuals: 684
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variant carriers: 0

GenotypeQuality
all individuals: 2142
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1746
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variant carriers: 0

GenotypeQuality
all individuals: 1998
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variant carriers: 0

GenotypeQuality
all individuals: 58
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variant carriers: 0

GenotypeQuality
all individuals: 13394
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 858
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variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1792
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variant carriers: 1

GenotypeQuality
all individuals: 509
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variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5518
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 25990
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 9.582215408202377e-5
allele num: 10436
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3796
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.029e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.208e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 7.099999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.94e0

DP
type: SiteQuality
SIO_000300: 7.25056e5

FS
type: SiteQuality
SIO_000300: 8.77e-1

MQ
type: SiteQuality
SIO_000300: 5.943e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.38e-2

GenotypeQuality
all individuals: 431
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4196
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variant carriers: 0

GenotypeQuality
all individuals: 2871
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18177
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variant carriers: 0

GenotypeQuality
all individuals: 4659
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variant carriers: 0

GenotypeQuality
all individuals: 1799
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variant carriers: 0

GenotypeQuality
all individuals: 166
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 552
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variant carriers: 0

GenotypeQuality
all individuals: 1150
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1477
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 179
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.808073115003808e-4
allele num: 2626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2778
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2924
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9714
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-2

DP
type: SiteQuality
SIO_000300: 6.62187e5

VQSLOD
type: SiteQuality
SIO_000300: -1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.759e0

QD
type: SiteQuality
SIO_000300: 8.550000000000001e0

GenotypeQuality
all individuals: 1249
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5994
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
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variant carriers: 0

GenotypeQuality
all individuals: 18760
bin: 7.5e0
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GenotypeQuality
all individuals: 280
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1506
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 101
bin: 5.25e1
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GenotypeQuality
all individuals: 335
bin: 8.75e1
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GenotypeQuality
all individuals: 431
bin: 9.25e1
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GenotypeQuality
all individuals: 850
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 4.25e1
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GenotypeQuality
all individuals: 681
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 378
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4438
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 19136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.45116e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.56e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.36e-1

QD
type: SiteQuality
SIO_000300: 2.184e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.61e0

GenotypeQuality
all individuals: 680
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 431
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variant carriers: 0

GenotypeQuality
all individuals: 18561
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1604
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 549
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GenotypeQuality
all individuals: 182
bin: 5.25e1
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GenotypeQuality
all individuals: 1198
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1797
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 843
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2370
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.073883161512027e-4
allele num: 9312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4160
num of homozygotes: 0

East Asian
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allele count: 2
allele frequency: 8.873114463176575e-4
allele num: 2254
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.27e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

DP
type: SiteQuality
SIO_000300: 6.3674e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

QD
type: SiteQuality
SIO_000300: 1.222e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.881e0

GenotypeQuality
all individuals: 1532
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 431
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GenotypeQuality
all individuals: 3119
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1926
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17662
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4160
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.073883161512027e-4
allele num: 9312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2370
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.222e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.12e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.28e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.881e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.27e-2

DP
type: SiteQuality
SIO_000300: 6.3674e5

MQRankSum
type: SiteQuality
SIO_000300: -3.23e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1969
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GenotypeQuality
all individuals: 2588
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.508386629660915e-5
allele num: 66296
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15634
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.83e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.017e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

DP
type: SiteQuality
SIO_000300: 2.438732e6

MQRankSum
type: SiteQuality
SIO_000300: 1.37e0

QD
type: SiteQuality
SIO_000300: 1.446e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.36e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 19622
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variant carriers: 20

GenotypeQuality
all individuals: 3485
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.559161799241284e-4
allele num: 66428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.59920291110726e-4
allele num: 11542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15852
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.975e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.415e1

VQSLOD
type: SiteQuality
SIO_000300: 5.42e0

DP
type: SiteQuality
SIO_000300: 2.459421e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-2

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 6518
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GenotypeQuality
all individuals: 4355
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4020
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GenotypeQuality
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GenotypeQuality
all individuals: 19621
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variant carriers: 39

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 16333
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 102
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 36
allele frequency: 3.46553715825953e-3
allele num: 10388
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66456
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.597852441981296e-4
allele num: 11548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15926
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.96e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.467e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.09e-1

FS
type: SiteQuality
SIO_000300: 8.139999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

DP
type: SiteQuality
SIO_000300: 2.464084e6

QD
type: SiteQuality
SIO_000300: 1.389e1

MQ
type: SiteQuality
SIO_000300: 5.502e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 500
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504619180885318e-5
allele num: 66462
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15976
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 2.462691e6

FS
type: SiteQuality
SIO_000300: 5.17e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 7.5e-2

ClippingRankSum
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SIO_000300: -1.027e0

QD
type: SiteQuality
SIO_000300: 1.068e1

BaseQRankSum
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SIO_000300: 1.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 43

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 40
allele frequency: 3.847633705271258e-3
allele num: 10396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16322
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.594706798131811e-4
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.478235e6

QD
type: SiteQuality
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.331e0

VQSLOD
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MQ
type: SiteQuality
SIO_000300: 5.978e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 48
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GenotypeQuality
all individuals: 37
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16410
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

FS
type: SiteQuality
SIO_000300: 1.532e0

QD
type: SiteQuality
SIO_000300: 9.74e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.925e0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -3.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.336e0

GenotypeDepth
all individuals: 1236
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variant carriers: 0

GenotypeDepth
all individuals: 34
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variant carriers: 0

GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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European (Finnish)
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Latino
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Other
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European (Non-Finnish)
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African
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South Asian
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ClippingRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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MQRankSum
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FS
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QD
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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African
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Latino
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Other
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European (Non-Finnish)
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European (Finnish)
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InbreedingCoeff
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QD
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MQ
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VQSLOD
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ClippingRankSum
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FS
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MQRankSum
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ReadPosRankSum
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DP
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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South Asian
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Other
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ReadPosRankSum
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InbreedingCoeff
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MQ
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DP
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ClippingRankSum
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VQSLOD
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MQRankSum
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FS
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QD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.49802087081684e-5
allele num: 66696
num of homozygotes: 0

East Asian
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num of homozygotes: 0

European (Finnish)
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num of homozygotes: 0

South Asian
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Other
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African
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MQ
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DP
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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num of homozygotes: 0

East Asian
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European (Non-Finnish)
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African
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Other
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European (Finnish)
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South Asian
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QD
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ClippingRankSum
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FS
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MQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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ReadPosRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

European (Non-Finnish)
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Latino
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European (Finnish)
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African
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Other
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South Asian
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DP
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FS
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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VQSLOD
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MQRankSum
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

Latino
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South Asian
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East Asian
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African
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European (Non-Finnish)
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BaseQRankSum
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MQRankSum
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FS
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InbreedingCoeff
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QD
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DP
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VQSLOD
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MQ
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.41e0

GenotypeQuality
all individuals: 82
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4341
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3489
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17293
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4024
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1963
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2618
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19571
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503442884204829e-5
allele num: 66514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.214e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.588e1

VQSLOD
type: SiteQuality
SIO_000300: 5.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.83e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.01e-1

DP
type: SiteQuality
SIO_000300: 2.470601e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.396e1

GenotypeQuality
all individuals: 4016
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16608
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4320
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6444
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3488
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 894
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1962
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19568
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 51
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506477854775535e-5
allele num: 66380
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -7.521e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.88e0

MQRankSum
type: SiteQuality
SIO_000300: -1.402e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

DP
type: SiteQuality
SIO_000300: 2.458979e6

QD
type: SiteQuality
SIO_000300: 1.69e1