9-114341092-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341092
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341092
    reference: chr 9
allele count: 1
allele frequency: 8.582806921175501e-6
allele num: 116512
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*532A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.635A>G
  hgvsp: ENSP00000440281.1:p.Asp212Gly
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.635A>G
  hgvsp: ENSP00000385763.2:p.Asp212Gly
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.266A>G
  hgvsp: ENSP00000238248.3:p.Asp89Gly
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.635A>G
  hgvsp: ENSP00000311572.5:p.Asp212Gly
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.89A>G
  hgvsp: ENSP00000435665.1:p.Asp30Gly
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7519
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42505
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 949
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 435
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47107
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4403
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2496
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 291
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asp212Gly
num of homozygotes: 0
population: Other
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

9-114341098-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341098
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341098
    reference: chr 9
allele count: 1
allele frequency: 8.484498820654664e-6
allele num: 117862
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.629G>A
  hgvsp: ENSP00000440281.1:p.Gly210Asp
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.260G>A
  hgvsp: ENSP00000238248.3:p.Gly87Asp
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.629G>A
  hgvsp: ENSP00000311572.5:p.Gly210Asp
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*526G>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.83G>A
  hgvsp: ENSP00000435665.1:p.Gly28Asp
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.629G>A
  hgvsp: ENSP00000385763.2:p.Gly210Asp
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 970
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 967
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly210Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

9-114341107-G-GAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341107
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341109
    reference: chr 9
allele count: 1
allele frequency: 8.399408681628814e-6
allele num: 119056
alternate allele: GAA
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.619_620insTT
  hgvsp: ENSP00000440281.1:p.Ser207PhefsTer13
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.619_620insTT
  hgvsp: ENSP00000385763.2:p.Ser207PhefsTer13
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*516_*517insTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.250_251insTT
  hgvsp: ENSP00000238248.3:p.Ser84PhefsTer13
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.73_74insTT
  hgvsp: ENSP00000435665.1:p.Ser25PhefsTer13
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.619_620insTT
  hgvsp: ENSP00000311572.5:p.Ser207PhefsTer13
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 408
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 976
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42911
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1215
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ser207PhefsTer13
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

9-114341109-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341109
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341109
    reference: chr 9
allele count: 9
allele frequency: 7.551729346020239e-5
allele num: 119178
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.249G>A
  hgvsp: ENST00000238248.3:c.249G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.618G>A
  hgvsp: ENST00000538962.1:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.618G>A
  hgvsp: ENST00000407693.2:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.618G>A
  hgvsp: ENST00000309195.5:c.618G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*515G>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.72G>A
  hgvsp: ENST00000466771.1:c.72G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42826
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 977
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3288
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8612
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49087
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4687
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala206Ala
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS

9-114341110-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341110
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341110
    reference: chr 9
allele count: 2
allele frequency: 1.676305422848043e-5
allele num: 119310
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.248C>T
  hgvsp: ENSP00000238248.3:p.Ala83Val
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.71C>T
  hgvsp: ENSP00000435665.1:p.Ala24Val
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.617C>T
  hgvsp: ENSP00000311572.5:p.Ala206Val
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.617C>T
  hgvsp: ENSP00000440281.1:p.Ala206Val
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.617C>T
  hgvsp: ENSP00000385763.2:p.Ala206Val
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*514C>T
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8709
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1017
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1228
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala206Val
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: FS

http://identifiers.org/exac.variant/9-114341111-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341111
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341111
    reference: chr 9
allele count: 21
allele frequency: 1.758146076822611e-4
allele num: 119444
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.247G>T
  hgvsp: ENSP00000238248.3:p.Ala83Ser
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.616G>T
  hgvsp: ENSP00000440281.1:p.Ala206Ser
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.70G>T
  hgvsp: ENSP00000435665.1:p.Ala24Ser
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.616G>T
  hgvsp: ENSP00000311572.5:p.Ala206Ser
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.616G>T
  hgvsp: ENSP00000385763.2:p.Ala206Ser
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*513G>T
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8793
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42749
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3352
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 9.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 557
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala206Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-114341112-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341112
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341112
    reference: chr 9
allele count: 2
allele frequency: 1.673108132978634e-5
allele num: 119538
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.615A>G
  hgvsp: ENST00000538962.1:c.615A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.246A>G
  hgvsp: ENST00000238248.3:c.246A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.69A>G
  hgvsp: ENST00000466771.1:c.69A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.615A>G
  hgvsp: ENST00000309195.5:c.615A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*512A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.615A>G
  hgvsp: ENST00000407693.2:c.615A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42766
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8831
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 988
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4766
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1019
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Lys205Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

9-114341122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341122
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341122
    reference: chr 9
allele count: 485
allele frequency: 4.040387210716607e-3
allele num: 120038
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.605C>T
  hgvsp: ENSP00000385763.2:p.Thr202Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.605C>T
  hgvsp: ENSP00000440281.1:p.Thr202Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.605C>T
  hgvsp: ENSP00000311572.5:p.Thr202Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*502C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.236C>T
  hgvsp: ENSP00000238248.3:p.Thr79Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.59C>T
  hgvsp: ENSP00000435665.1:p.Thr20Ile
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 5.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 7.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 9.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 8.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 3.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42193
  bin: 2.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 3.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9142
  bin: 2.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr202Ile
num of homozygotes: 1
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

9-114341134-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341134
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341134
    reference: chr 9
allele count: 1
allele frequency: 8.305096006909839e-6
allele num: 120408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.593C>T
  hgvsp: ENSP00000440281.1:p.Ser198Phe
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.593C>T
  hgvsp: ENSP00000385763.2:p.Ser198Phe
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.224C>T
  hgvsp: ENSP00000238248.3:p.Ser75Phe
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.47C>T
  hgvsp: ENSP00000435665.1:p.Ser16Phe
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.593C>T
  hgvsp: ENSP00000311572.5:p.Ser198Phe
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*490C>T
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41923
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9506
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3700
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4988
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1058
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser198Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

9-114341136-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341136
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341136
    reference: chr 9
allele count: 8
allele frequency: 6.641649785806795e-5
allele num: 120452
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.591G>A
  hgvsp: ENST00000309195.5:c.591G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.591G>A
  hgvsp: ENST00000538962.1:c.591G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.222G>A
  hgvsp: ENST00000238248.3:c.222G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*488G>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.591G>A
  hgvsp: ENST00000407693.2:c.591G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.45G>A
  hgvsp: ENST00000466771.1:c.45G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41863
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3726
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 465
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1232
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1061
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4999
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu197Glu
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/9-114341141-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341141
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341141
    reference: chr 9
allele count: 2
allele frequency: 1.658952537367906e-5
allele num: 120558
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*483G>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.586G>T
  hgvsp: ENSP00000440281.1:p.Val196Leu
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.586G>T
  hgvsp: ENSP00000311572.5:p.Val196Leu
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.217G>T
  hgvsp: ENSP00000238248.3:p.Val73Leu
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.586G>T
  hgvsp: ENSP00000385763.2:p.Val196Leu
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.40G>T
  hgvsp: ENSP00000435665.1:p.Val14Leu
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41732
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val196Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum

9-114341142-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341142
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341142
    reference: chr 9
allele count: 3
allele frequency: 2.487892257679294e-5
allele num: 120584
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*482G>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.216G>A
  hgvsp: ENST00000238248.3:c.216G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.585G>A
  hgvsp: ENST00000407693.2:c.585G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.39G>A
  hgvsp: ENST00000466771.1:c.39G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.585G>A
  hgvsp: ENST00000309195.5:c.585G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.585G>A
  hgvsp: ENST00000538962.1:c.585G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9734
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3837
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41643
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 556
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49576
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 293
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr195Thr
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD

9-114341143-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341143
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341143
    reference: chr 9
allele count: 1
allele frequency: 8.291186468783682e-6
allele num: 120610
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*481C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.584C>T
  hgvsp: ENSP00000385763.2:p.Thr195Met
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.584C>T
  hgvsp: ENSP00000311572.5:p.Thr195Met
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.38C>T
  hgvsp: ENSP00000435665.1:p.Thr13Met
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.584C>T
  hgvsp: ENSP00000440281.1:p.Thr195Met
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.215C>T
  hgvsp: ENSP00000238248.3:p.Thr72Met
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41637
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9774
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1226
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Thr195Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

9-114341147-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341147
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341147
    reference: chr 9
allele count: 10
allele frequency: 8.28349430923941e-5
allele num: 120722
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.580A>G
  hgvsp: ENSP00000385763.2:p.Lys194Glu
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.580A>G
  hgvsp: ENSP00000311572.5:p.Lys194Glu
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*477A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.580A>G
  hgvsp: ENSP00000440281.1:p.Lys194Glu
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.211A>G
  hgvsp: ENSP00000238248.3:p.Lys71Glu
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.34A>G
  hgvsp: ENSP00000435665.1:p.Lys12Glu
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3893
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9875
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49875
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1237
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5056
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Lys194Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

9-114341151-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341151
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341151
    reference: chr 9
allele count: 1
allele frequency: 8.277597510098669e-6
allele num: 120808
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*473C>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.207C>A
  hgvsp: ENSP00000238248.3:p.Asn69Lys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.576C>A
  hgvsp: ENSP00000440281.1:p.Asn192Lys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.30C>A
  hgvsp: ENSP00000435665.1:p.Asn10Lys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.576C>A
  hgvsp: ENSP00000311572.5:p.Asn192Lys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.576C>A
  hgvsp: ENSP00000385763.2:p.Asn192Lys
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 589
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9980
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41559
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1131
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49942
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 225
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn192Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

9-114341159-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341159
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341159
    reference: chr 9
allele count: 8
allele frequency: 6.613647261123328e-5
allele num: 120962
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.568G>A
  hgvsp: ENSP00000440281.1:p.Val190Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*465G>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.568G>A
  hgvsp: ENSP00000311572.5:p.Val190Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.22G>A
  hgvsp: ENSP00000435665.1:p.Val8Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.568G>A
  hgvsp: ENSP00000385763.2:p.Val190Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.199G>A
  hgvsp: ENSP00000238248.3:p.Val67Ile
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41546
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4004
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 315
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1072
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Val190Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: African
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

9-114341160-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341160
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341160
    reference: chr 9
allele count: 2
allele frequency: 1.652947204866277e-5
allele num: 120996
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*464C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.567C>T
  hgvsp: ENST00000538962.1:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.567C>T
  hgvsp: ENST00000309195.5:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.567C>T
  hgvsp: ENST00000407693.2:c.567C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.198C>T
  hgvsp: ENST00000238248.3:c.198C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.21C>T
  hgvsp: ENST00000466771.1:c.21C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41533
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10160
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4038
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5123
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Val189Val
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD

9-114341162-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341162
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341162
    reference: chr 9
allele count: 9
allele frequency: 7.434944237918216e-5
allele num: 121050
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.565G>A
  hgvsp: ENSP00000440281.1:p.Val189Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.196G>A
  hgvsp: ENSP00000238248.3:p.Val66Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.565G>A
  hgvsp: ENSP00000385763.2:p.Val189Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.19G>A
  hgvsp: ENSP00000435665.1:p.Val7Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*462G>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.565G>A
  hgvsp: ENSP00000311572.5:p.Val189Ile
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10221
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41551
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4048
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val189Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

9-114341163-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341163
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341163
    reference: chr 9
allele count: 1
allele frequency: 8.259138737012504e-6
allele num: 121078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.18T>C
  hgvsp: ENST00000466771.1:c.18T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.564T>C
  hgvsp: ENST00000407693.2:c.564T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.195T>C
  hgvsp: ENST00000238248.3:c.195T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*461T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.564T>C
  hgvsp: ENST00000309195.5:c.564T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.564T>C
  hgvsp: ENST00000538962.1:c.564T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 41568
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4039
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1140
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5146
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50559
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp188Asp
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-114341167-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341167
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341167
    reference: chr 9
allele count: 3
allele frequency: 2.47639173215347e-5
allele num: 121144
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.14T>G
  hgvsp: ENSP00000435665.1:p.Phe5Cys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.560T>G
  hgvsp: ENSP00000440281.1:p.Phe187Cys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.560T>G
  hgvsp: ENSP00000311572.5:p.Phe187Cys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*457T>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.560T>G
  hgvsp: ENSP00000385763.2:p.Phe187Cys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.191T>G
  hgvsp: ENSP00000238248.3:p.Phe64Cys
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 496
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41624
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10273
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50764
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe187Cys
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-114341174-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341174
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341174
    reference: chr 9
allele count: 1
allele frequency: 8.252595441266279e-6
allele num: 121174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*450C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.7C>T
  hgvsp: ENSP00000435665.1:p.Leu3Phe
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.553C>T
  hgvsp: ENSP00000385763.2:p.Leu185Phe
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.184C>T
  hgvsp: ENSP00000238248.3:p.Leu62Phe
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.553C>T
  hgvsp: ENSP00000440281.1:p.Leu185Phe
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.553C>T
  hgvsp: ENSP00000311572.5:p.Leu185Phe
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41557
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1143
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4072
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50695
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5156
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu185Phe
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-114341175-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341175
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341175
    reference: chr 9
allele count: 2
allele frequency: 1.650519088253256e-5
allele num: 121174
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*449G>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.6G>C
  hgvsp: ENSP00000435665.1:p.Lys2Asn
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.552G>C
  hgvsp: ENSP00000311572.5:p.Lys184Asn
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.552G>C
  hgvsp: ENSP00000385763.2:p.Lys184Asn
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.552G>C
  hgvsp: ENSP00000440281.1:p.Lys184Asn
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.183G>C
  hgvsp: ENSP00000238248.3:p.Lys61Asn
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1074
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50701
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys184Asn
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum

9-114341175-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341175
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341175
    reference: chr 9
allele count: 2
allele frequency: 1.650519088253256e-5
allele num: 121174
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.183G>A
  hgvsp: ENST00000238248.3:c.183G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.552G>A
  hgvsp: ENST00000538962.1:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000435665
  ensembl transcript: ENST00000466771
  gene symbol: PTGR1
  hgvsc: ENST00000466771.1:c.6G>A
  hgvsp: ENST00000466771.1:c.6G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.552G>A
  hgvsp: ENST00000407693.2:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*449G>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.552G>A
  hgvsp: ENST00000309195.5:c.552G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10288
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41542
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5156
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1046
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Lys184Lys
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

9-114341185-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341185
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341185
    reference: chr 9
allele count: 1
allele frequency: 8.252323028932645e-6
allele num: 121178
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*439A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.542A>G
  hgvsp: ENSP00000311572.5:p.Tyr181Cys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.173A>G
  hgvsp: ENSP00000238248.3:p.Tyr58Cys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.542A>G
  hgvsp: ENSP00000440281.1:p.Tyr181Cys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.542A>G
  hgvsp: ENSP00000385763.2:p.Tyr181Cys
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4075
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41316
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1147
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10325
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50474
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Tyr181Cys
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQ
site quality: QD

9-114341200-TC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341200
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341199
    reference: chr 9
allele count: 1
allele frequency: 8.253685270473266e-6
allele num: 121158
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.526delG
  hgvsp: ENSP00000311572.5:p.Asp176MetfsTer21
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.157delG
  hgvsp: ENSP00000238248.3:p.Asp53MetfsTer21
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.526delG
  hgvsp: ENSP00000440281.1:p.Asp176MetfsTer21
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.526delG
  hgvsp: ENSP00000385763.2:p.Asp176MetfsTer21
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*423delG
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10358
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40556
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1174
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1222
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1009
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp176MetfsTer21
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: TC
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum

9-114341221-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341221
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341221
    reference: chr 9
allele count: 141
allele frequency: 1.164788685854013e-3
allele num: 121052
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*403T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.506T>C
  hgvsp: ENSP00000385763.2:p.Val169Ala
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.506T>C
  hgvsp: ENSP00000311572.5:p.Val169Ala
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.137T>C
  hgvsp: ENSP00000238248.3:p.Val46Ala
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.506T>C
  hgvsp: ENSP00000440281.1:p.Val169Ala
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 4.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 3.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4334
  bin: 3.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1606
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36319
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 4.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4078
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9468
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 9.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 998
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1344
  bin: 9.75e1
  variant carriers: 136
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5386
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 527
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Val169Ala
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum

9-114341222-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341222
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341222
    reference: chr 9
allele count: 1
allele frequency: 8.271161767381846e-6
allele num: 120902
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*402G>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.505G>A
  hgvsp: ENSP00000440281.1:p.Val169Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.505G>A
  hgvsp: ENSP00000311572.5:p.Val169Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.136G>A
  hgvsp: ENSP00000238248.3:p.Val46Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.505G>A
  hgvsp: ENSP00000385763.2:p.Val169Ile
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1713
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35448
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4363
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5213
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 521
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7050
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1480
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41024
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1123
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4475
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Val169Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-114341237-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341237
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341238
    reference: chr 9
allele count: 31
allele frequency: 3.0271663769701e-4
allele num: 102406
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-7dupT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-7dupT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-7dupT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-7dupT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-7dupT
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 1.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 16401
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11872
  bin: 2.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6730
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 2.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 8215
  bin: 2.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7606
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3367
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.25e1
  variant carriers: 3
hgvs: c.496-7dupT
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

9-114341237-T-TAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341237
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341239
    reference: chr 9
allele count: 4
allele frequency: 3.906021131574322e-5
allele num: 102406
alternate allele: TAA
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-7_*393-6insTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-7_496-6insTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-7_127-6insTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-7_496-6insTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-7_496-6insTT
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5408
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16401
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11872
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 470
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9321
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2358
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1042
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6730
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3342
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2256
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2040
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1505
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7436
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3525
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4452
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8215
  bin: 2.25e1
  variant carriers: 2
hgvs: c.496-7_496-6insTT
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

9-114341238-A-AG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341238
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341239
    reference: chr 9
allele count: 250
allele frequency: 2.595676640986772e-3
allele num: 96314
alternate allele: AG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-8dupC
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-8dupC
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-8dupC
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-8dupC
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-8dupC
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 11128
  bin: 2.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 1.25e1
  variant carriers: 186
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.5e0
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 14353
  bin: 2.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 1.75e1
  variant carriers: 177
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8535
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4123
  bin: 1.75e1
  variant carriers: 66
genotype quality: GenotypeQuality
  all individuals: 3638
  bin: 5.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 6463
  bin: 3.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 5939
  bin: 3.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 1.25e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 414
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3207
  bin: 2.5e0
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 3360
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 7.5e0
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 4638
  bin: 4.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1715
  bin: 5.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 4145
  bin: 2.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 7.25e1
  variant carriers: 7
num of homozygotes: 1
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

9-114341238-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341238
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341237
    reference: chr 9
allele count: 22
allele frequency: 2.28419544406836e-4
allele num: 96314
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-8delC
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-8delC
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-8delC
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-8delC
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-8delC
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11128
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8841
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14353
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5375
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8535
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4638
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1850
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6716
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3360
  bin: 4.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 5246
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3207
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3638
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 898
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1594
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4123
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2314
  bin: 1.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 804
  bin: 7.25e1
  variant carriers: 0
hgvs: c.496-8delC
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: Other
population: South Asian
reference allele: AG
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS

9-114341239-G-GA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341239
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341240
    reference: chr 9
allele count: 7883
allele frequency: 1.233144573413009e-1
allele num: 63926
alternate allele: GA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-9dupT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-9dupT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-9dupT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-9dupT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-9dupT
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13774
  bin: 1.75e1
  variant carriers: 2660
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 3.75e1
  variant carriers: 307
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 3.25e1
  variant carriers: 585
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 582
genotype depth: GenotypeDepth
  all individuals: 14551
  bin: 2.25e1
  variant carriers: 2171
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 180
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 1.25e1
  variant carriers: 1973
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 2.75e1
  variant carriers: 1057
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 4.75e1
  variant carriers: 549
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 2.25e1
  variant carriers: 503
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 8.25e1
  variant carriers: 358
genotype quality: GenotypeQuality
  all individuals: 21124
  bin: 2.5e0
  variant carriers: 410
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 544
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 5.75e1
  variant carriers: 518
genotype quality: GenotypeQuality
  all individuals: 6076
  bin: 9.75e1
  variant carriers: 1594
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 4.25e1
  variant carriers: 550
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 5.25e1
  variant carriers: 497
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 2.75e1
  variant carriers: 537
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 1.25e1
  variant carriers: 428
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 6.75e1
  variant carriers: 467
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 536
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.5e0
  variant carriers: 433
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 1.75e1
  variant carriers: 443
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: East Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

9-114341239-G-GAA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341239
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341241
    reference: chr 9
allele count: 399
allele frequency: 6.241591840565654e-3
allele num: 63926
alternate allele: GAA
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-10_496-9dupTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-10_496-9dupTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-10_127-9dupTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-10_496-9dupTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-10_*393-9dupTT
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 1.25e1
  variant carriers: 149
genotype depth: GenotypeDepth
  all individuals: 13774
  bin: 1.75e1
  variant carriers: 166
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 3.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 3.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 14551
  bin: 2.25e1
  variant carriers: 110
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 2.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 5.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 2.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 4.75e1
  variant carriers: 34
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 6.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 1.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 4.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 6.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 2.75e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 5.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 6076
  bin: 9.75e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 21124
  bin: 2.5e0
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.5e0
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 8.25e1
  variant carriers: 18
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: InbreedingCoeff

9-114341239-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341239
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341238
    reference: chr 9
allele count: 17393
allele frequency: 2.720802177517755e-1
allele num: 63926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-9delT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-9delT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-9delT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-9delT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-9delT
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 3.25e1
  variant carriers: 2070
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 532
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 2.75e1
  variant carriers: 3948
genotype depth: GenotypeDepth
  all individuals: 13774
  bin: 1.75e1
  variant carriers: 4468
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 14551
  bin: 2.25e1
  variant carriers: 5413
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 267
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 3.75e1
  variant carriers: 967
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 1.25e1
  variant carriers: 1954
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 143
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 332
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 5.75e1
  variant carriers: 1094
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 5.25e1
  variant carriers: 1060
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 8.25e1
  variant carriers: 672
genotype quality: GenotypeQuality
  all individuals: 21124
  bin: 2.5e0
  variant carriers: 689
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 1.75e1
  variant carriers: 852
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 2.25e1
  variant carriers: 883
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 2.75e1
  variant carriers: 988
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 8.75e1
  variant carriers: 648
genotype quality: GenotypeQuality
  all individuals: 6076
  bin: 9.75e1
  variant carriers: 3833
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 7.25e1
  variant carriers: 828
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 1076
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 4.25e1
  variant carriers: 1150
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 553
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.5e0
  variant carriers: 768
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 1.25e1
  variant carriers: 821
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
population: African
reference allele: GA
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

9-114341239-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341239
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341237
    reference: chr 9
allele count: 2061
allele frequency: 3.224040296592936e-2
allele num: 63926
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-10_127-9delTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-10_*393-9delTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-10_496-9delTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-10_496-9delTT
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-10_496-9delTT
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 3.75e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 2.75e1
  variant carriers: 613
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 3.25e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 1.25e1
  variant carriers: 226
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 14551
  bin: 2.25e1
  variant carriers: 730
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 13774
  bin: 1.75e1
  variant carriers: 603
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 1.75e1
  variant carriers: 171
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 5.25e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 8.75e1
  variant carriers: 75
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 2.75e1
  variant carriers: 164
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 6.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 5.75e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 4.75e1
  variant carriers: 113
genotype quality: GenotypeQuality
  all individuals: 21124
  bin: 2.5e0
  variant carriers: 192
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 144
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 2.25e1
  variant carriers: 148
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 1.25e1
  variant carriers: 141
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.5e0
  variant carriers: 200
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 4.25e1
  variant carriers: 135
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 58
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
reference allele: GAA
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

9-114341239-GAAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341239
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341236
    reference: chr 9
allele count: 553
allele frequency: 8.65062728780152e-3
allele num: 63926
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 13774
  bin: 1.75e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 14551
  bin: 2.25e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 3.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 3.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 1.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 2.75e1
  variant carriers: 174
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 1.25e1
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 5.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 21124
  bin: 2.5e0
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.5e0
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 2.75e1
  variant carriers: 46
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 4.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 1.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 2.25e1
  variant carriers: 37
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 41
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 5.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 6076
  bin: 9.75e1
  variant carriers: 104
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 8.25e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 4.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 8.75e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 6.25e1
  variant carriers: 27
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 7.25e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 6.75e1
  variant carriers: 24
num of homozygotes: 0
population: South Asian
  type: Population
  allele count: 58
  allele frequency: 8.297567954220314e-3
  allele num: 6990
  num of homozygotes: 0
population: Other
  type: Population
  allele count: 6
  allele frequency: 1.167315175097276e-2
  allele num: 514
  num of homozygotes: 0
population: African
  type: Population
  allele count: 51
  allele frequency: 1.005917159763314e-2
  allele num: 5070
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 22
  allele frequency: 5.617977528089887e-3
  allele num: 3916
  num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: GAAA
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

9-114341239-GAAAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341239
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341235
    reference: chr 9
allele count: 154
allele frequency: 2.409035447235866e-3
allele num: 63926
alternate allele: G
canonical: false
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 1.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5678
  bin: 3.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 14551
  bin: 2.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 2683
  bin: 3.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13774
  bin: 1.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10165
  bin: 2.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1516
  bin: 7.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1995
  bin: 1.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 2.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 1.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2142
  bin: 3.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 5.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 4.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2163
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 21124
  bin: 2.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 2146
  bin: 7.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 2019
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1252
  bin: 8.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 920
  bin: 9.25e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 2.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 2196
  bin: 3.75e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1683
  bin: 6.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 6.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1374
  bin: 7.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 6076
  bin: 9.75e1
  variant carriers: 22
num of homozygotes: 0
population: European (Non-Finnish)
  type: Population
  allele count: 88
  allele frequency: 2.440106477373558e-3
  allele num: 36064
  num of homozygotes: 0
population: East Asian
  type: Population
  allele count: 11
  allele frequency: 2.345415778251599e-3
  allele num: 4690
  num of homozygotes: 0
population: European (Finnish)
  type: Population
  allele count: 8
  allele frequency: 2.042900919305414e-3
  allele num: 3916
  num of homozygotes: 0
population: Latino
  type: Population
  allele count: 15
  allele frequency: 2.24483687518707e-3
  allele num: 6682
  num of homozygotes: 0
population: African
population: South Asian
population: Other
reference allele: GAAAA
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

9-114341240-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341240
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341240
    reference: chr 9
allele count: 7955
allele frequency: 3.471676704198307e-1
allele num: 22914
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-9T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-9T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-9T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-9T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-9T>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 6.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 6414
  bin: 2.75e1
  variant carriers: 1646
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 1.25e1
  variant carriers: 839
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.5e0
  variant carriers: 213
genotype depth: GenotypeDepth
  all individuals: 4547
  bin: 3.25e1
  variant carriers: 1089
genotype depth: GenotypeDepth
  all individuals: 7078
  bin: 2.25e1
  variant carriers: 1911
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 9.75e1
  variant carriers: 79
genotype depth: GenotypeDepth
  all individuals: 1637
  bin: 4.25e1
  variant carriers: 373
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 5.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 6589
  bin: 1.75e1
  variant carriers: 1537
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 6.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 2792
  bin: 3.75e1
  variant carriers: 639
genotype depth: GenotypeDepth
  all individuals: 809
  bin: 4.75e1
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 5.75e1
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 495
  bin: 5.25e1
  variant carriers: 291
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 8.25e1
  variant carriers: 264
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 2.25e1
  variant carriers: 265
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 7.25e1
  variant carriers: 283
genotype quality: GenotypeQuality
  all individuals: 939
  bin: 1.25e1
  variant carriers: 214
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 7.75e1
  variant carriers: 292
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 7.5e0
  variant carriers: 209
genotype quality: GenotypeQuality
  all individuals: 21305
  bin: 2.5e0
  variant carriers: 146
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.25e1
  variant carriers: 254
genotype quality: GenotypeQuality
  all individuals: 594
  bin: 3.75e1
  variant carriers: 295
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 1.75e1
  variant carriers: 267
genotype quality: GenotypeQuality
  all individuals: 547
  bin: 4.25e1
  variant carriers: 300
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 2.75e1
  variant carriers: 302
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 5.75e1
  variant carriers: 307
genotype quality: GenotypeQuality
  all individuals: 539
  bin: 6.25e1
  variant carriers: 288
num of homozygotes: 30
population: South Asian
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

9-114341241-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341241
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341241
    reference: chr 9
allele count: 688
allele frequency: 2.127659574468085e-2
allele num: 32336
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-10T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-10T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-10T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-10T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-10T>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 4.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3835
  bin: 1.25e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6280
  bin: 3.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 2782
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 1697
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 7.5e0
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 982
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5628
  bin: 1.75e1
  variant carriers: 171
genotype depth: GenotypeDepth
  all individuals: 7976
  bin: 3.25e1
  variant carriers: 173
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9012
  bin: 2.75e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 6475
  bin: 2.25e1
  variant carriers: 305
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30253
  bin: 2.5e0
  variant carriers: 131
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 876
  bin: 5.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 1026
  bin: 4.25e1
  variant carriers: 60
genotype quality: GenotypeQuality
  all individuals: 1860
  bin: 1.25e1
  variant carriers: 126
genotype quality: GenotypeQuality
  all individuals: 531
  bin: 9.75e1
  variant carriers: 56
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1662
  bin: 1.75e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 2269
  bin: 7.5e0
  variant carriers: 138
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 6.75e1
  variant carriers: 30
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 2.75e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 2154
  bin: 6.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 1659
  bin: 3.25e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 7.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 630
  bin: 5.75e1
  variant carriers: 35
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

9-114341242-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341242
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341242
    reference: chr 9
allele count: 146
allele frequency: 1.783140770414519e-3
allele num: 81878
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-11T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-11T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-11T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-11T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-11T>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1265
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 2.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 3.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 1.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1876
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 618
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 13802
  bin: 2.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10332
  bin: 3.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2110
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4986
  bin: 1.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 10313
  bin: 2.5e0
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 2.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1922
  bin: 4.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2874
  bin: 3.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 7.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 7.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1797
  bin: 1.25e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 1.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 1803
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 6818
  bin: 2.25e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 1697
  bin: 5.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2242
  bin: 3.75e1
  variant carriers: 17
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

9-114341243-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341243
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341243
    reference: chr 9
allele count: 24
allele frequency: 2.278163799977218e-4
allele num: 105348
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-12T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-12T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-12T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-12T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-12T>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 348
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4390
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6402
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2872
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6981
  bin: 2.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11307
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17732
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1235
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3109
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7904
  bin: 2.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1962
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 851
  bin: 1.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1153
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 577
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 877
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 2817
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 2.5e0
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2008
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1761
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP

9-114341244-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341244
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341244
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 112742
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-13T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-13T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-13T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-13T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-13T>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4124
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11081
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3542
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2580
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6924
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2049
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1301
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1003
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2526
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 350
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 631
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2304
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

9-114341248-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341248
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341248
    reference: chr 9
allele count: 1
allele frequency: 8.762859496310836e-6
allele num: 114118
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-17T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-17T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-17T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-17T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-17T>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7654
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8700
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1799
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18845
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3203
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2813
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2986
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2360
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24557
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1482
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9172
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

9-114341252-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341252
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341252
    reference: chr 9
allele count: 12
allele frequency: 1.065454416308556e-4
allele num: 112628
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-21T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-21T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-21T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-21T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-21T>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17248
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3223
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10548
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5368
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6710
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1791
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9533
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3155
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1969
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2213
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 783
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21596
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 590
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3538
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6408
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3512
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2533
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP

9-114341254-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341254
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341254
    reference: chr 9
allele count: 2
allele frequency: 1.876700760063808e-5
allele num: 106570
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-23T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-23T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-23T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-23T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-23T>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11421
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3856
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10497
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 926
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

9-114341254-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341254
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341254
    reference: chr 9
allele count: 1
allele frequency: 9.383503800319039e-6
allele num: 106570
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-23T>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-23T>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-23T>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-23T>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-23T>A
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16817
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8797
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3409
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5043
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10497
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3742
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1585
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3856
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19550
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2230
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

9-114341263-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341263
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341263
    reference: chr 9
allele count: 1
allele frequency: 9.267325264582136e-6
allele num: 107906
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-32A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-32A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-32A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-32A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-32A>G
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6567
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4532
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 522
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9544
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5055
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2102
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16970
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 613
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1050
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6010
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4879
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1365
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 469
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ

9-114341269-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341269
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341269
    reference: chr 9
allele count: 1
allele frequency: 9.459485025635204e-6
allele num: 105714
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-38T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-38T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-38T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-38T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-38T>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14060
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16541
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6352
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9028
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5940
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5252
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7045
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 889
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 555
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12777
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 212
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2231
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1036
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2844
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 698
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum

9-114341280-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341280
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341280
    reference: chr 9
allele count: 5
allele frequency: 4.957759885773212e-5
allele num: 100852
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-49A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-49A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-49A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-49A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-49A>G
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7821
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9359
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14998
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15497
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6485
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7361
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2608
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 954
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5224
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 355
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

9-114341280-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114341280
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114341280
    reference: chr 9
allele count: 1
allele frequency: 9.915519771546425e-6
allele num: 100852
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.127-49A>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.496-49A>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*393-49A>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.496-49A>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.496-49A>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15497
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7821
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2299
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14998
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9359
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 850
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1241
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1928
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2608
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2112
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 562
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10634
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 2396
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
  all individuals: 6485
  bin: 3.75e1
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genotype quality: GenotypeQuality
  all individuals: 3009
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 691
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

9-114345709-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345709
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345709
    reference: chr 9
allele count: 4
allele frequency: 3.299948850792813e-5
allele num: 121214
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.495+43T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.495+43T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.126+43T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*392+43T>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.495+43T>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3553
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6577
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5264
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4551
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 880
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1907
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3607
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4054
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2336
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41504
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
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  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2136
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1204
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

9-114345710-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345710
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345710
    reference: chr 9
allele count: 152
allele frequency: 1.253877120042236e-3
allele num: 121224
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.126+42A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.495+42A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.495+42A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*392+42A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.495+42A>G
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4052
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3622
  bin: 9.75e1
  variant carriers: 82
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2651
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6235
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4555
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1898
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 9.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 4022
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6576
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2725
  bin: 7.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 5262
  bin: 6.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 8.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2545
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2140
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41513
  bin: 9.75e1
  variant carriers: 152
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

9-114345713-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345713
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345713
    reference: chr 9
allele count: 1
allele frequency: 8.249463784853985e-6
allele num: 121220
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.495+39C>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*392+39C>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.495+39C>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.495+39C>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.126+39C>G
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5270
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3616
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4571
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3550
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6240
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1959
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41457
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2134
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP

9-114345715-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345715
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345715
    reference: chr 9
allele count: 3
allele frequency: 2.474716644944154e-5
allele num: 121226
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.126+37A>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.495+37A>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.495+37A>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*392+37A>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.495+37A>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5271
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4574
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4051
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2131
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41457
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2358
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1132
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

9-114345726-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345726
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345726
    reference: chr 9
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.495+26C>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.495+26C>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.126+26C>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*392+26C>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.495+26C>A
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6241
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4098
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6583
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3810
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1131
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7346
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41457
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1957
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

9-114345727-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345727
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345727
    reference: chr 9
allele count: 2
allele frequency: 1.649620587264929e-5
allele num: 121240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*392+25G>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.495+25G>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.495+25G>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.495+25G>C
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.126+25G>C
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4587
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6585
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5593
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2356
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7338
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum

9-114345730-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345730
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345730
    reference: chr 9
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.495+22C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.126+22C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.495+22C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.495+22C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*392+22C>T
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7478
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

9-114345730-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345730
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345730
    reference: chr 9
allele count: 1
allele frequency: 8.246198502490351e-6
allele num: 121268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.495+22C>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*392+22C>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.126+22C>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.495+22C>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.495+22C>G
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3054
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1221
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6586
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3905
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6243
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6186
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7478
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41458
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum

9-114345732-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345732
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345732
    reference: chr 9
allele count: 3
allele frequency: 2.473288484368817e-5
allele num: 121296
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.495+20A>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.495+20A>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.495+20A>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.126+20A>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*392+20A>T
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4056
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3920
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3059
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6185
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6244
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1220
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5272
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1896
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3547
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2124
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7532
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

9-114345759-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345759
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345759
    reference: chr 9
allele count: 83
allele frequency: 6.837353367602478e-4
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.488A>T
  hgvsp: ENSP00000311572.5:p.Lys163Met
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*385A>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.488A>T
  hgvsp: ENSP00000440281.1:p.Lys163Met
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.488A>T
  hgvsp: ENSP00000385763.2:p.Lys163Met
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.119A>T
  hgvsp: ENSP00000238248.3:p.Lys40Met
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6590
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6188
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4169
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5269
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4115
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4055
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6242
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3577
  bin: 9.75e1
  variant carriers: 73
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41462
  bin: 9.75e1
  variant carriers: 83
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2116
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Lys163Met
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

9-114345767-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345767
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345767
    reference: chr 9
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.480G>A
  hgvsp: ENST00000309195.5:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.480G>A
  hgvsp: ENST00000407693.2:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.111G>A
  hgvsp: ENST00000238248.3:c.111G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.480G>A
  hgvsp: ENST00000538962.1:c.480G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*377G>A
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 869
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2731
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4121
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5584
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3027
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2419
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln160Gln
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ

9-114345775-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345775
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345775
    reference: chr 9
allele count: 6
allele frequency: 4.941932295527551e-5
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.103G>A
  hgvsp: ENSP00000238248.3:p.Val35Met
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*369G>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.472G>A
  hgvsp: ENSP00000440281.1:p.Val158Met
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.472G>A
  hgvsp: ENSP00000311572.5:p.Val158Met
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.472G>A
  hgvsp: ENSP00000385763.2:p.Val158Met
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4062
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1954
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7857
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41447
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val158Met
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum

9-114345776-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345776
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345776
    reference: chr 9
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*368C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.471C>T
  hgvsp: ENST00000309195.5:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.471C>T
  hgvsp: ENST00000407693.2:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.471C>T
  hgvsp: ENST00000538962.1:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.102C>T
  hgvsp: ENST00000238248.3:c.102C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7859
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41448
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Val157Val
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: QD

9-114345778-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345778
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345778
    reference: chr 9
allele count: 1
allele frequency: 8.236689509752241e-6
allele num: 121408
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.469G>A
  hgvsp: ENSP00000440281.1:p.Val157Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.469G>A
  hgvsp: ENSP00000311572.5:p.Val157Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.100G>A
  hgvsp: ENSP00000238248.3:p.Val34Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.469G>A
  hgvsp: ENSP00000385763.2:p.Val157Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*366G>A
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4185
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4585
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4140
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1209
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41448
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7865
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Val157Ile
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

9-114345782-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345782
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345782
    reference: chr 9
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.465C>T
  hgvsp: ENST00000538962.1:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.465C>T
  hgvsp: ENST00000407693.2:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*362C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.465C>T
  hgvsp: ENST00000309195.5:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.96C>T
  hgvsp: ENST00000238248.3:c.96C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5279
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4184
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4143
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1126
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7864
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly155Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: MQ

9-114345792-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345792
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345792
    reference: chr 9
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*352G>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.455G>A
  hgvsp: ENSP00000440281.1:p.Gly152Glu
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.455G>A
  hgvsp: ENSP00000311572.5:p.Gly152Glu
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.86G>A
  hgvsp: ENSP00000238248.3:p.Gly29Glu
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.455G>A
  hgvsp: ENSP00000385763.2:p.Gly152Glu
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4148
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41445
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7880
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly152Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

9-114345796-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345796
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345796
    reference: chr 9
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.82G>A
  hgvsp: ENSP00000238248.3:p.Ala28Thr
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*348G>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.451G>A
  hgvsp: ENSP00000440281.1:p.Ala151Thr
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.451G>A
  hgvsp: ENSP00000385763.2:p.Ala151Thr
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.451G>A
  hgvsp: ENSP00000311572.5:p.Ala151Thr
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6255
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3015
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 868
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41445
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala151Thr
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

9-114345808-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345808
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345808
    reference: chr 9
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.439G>A
  hgvsp: ENSP00000385763.2:p.Val147Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*336G>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.70G>A
  hgvsp: ENSP00000238248.3:p.Val24Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.439G>A
  hgvsp: ENSP00000440281.1:p.Val147Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.439G>A
  hgvsp: ENSP00000311572.5:p.Val147Ile
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3504
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3014
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41445
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2420
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2547
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val147Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum

9-114345817-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345817
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345817
    reference: chr 9
allele count: 2
allele frequency: 1.647310765175851e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.430A>G
  hgvsp: ENSP00000440281.1:p.Thr144Ala
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.61A>G
  hgvsp: ENSP00000238248.3:p.Thr21Ala
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.430A>G
  hgvsp: ENSP00000311572.5:p.Thr144Ala
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*327A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.430A>G
  hgvsp: ENSP00000385763.2:p.Thr144Ala
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2730
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4583
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41446
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr144Ala
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS

9-114345829-T-TC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345829
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345830
    reference: chr 9
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: TC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.417dupG
  hgvsp: ENSP00000311572.5:p.Lys140GlufsTer9
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.417dupG
  hgvsp: ENSP00000385763.2:p.Lys140GlufsTer9
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.417dupG
  hgvsp: ENSP00000440281.1:p.Lys140GlufsTer9
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.48dupG
  hgvsp: ENSP00000238248.3:p.Lys17GlufsTer9
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*314dupG
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4187
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1890
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6258
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3006
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2546
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41446
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2122
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys140GlufsTer9
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: VQSLOD

9-114345851-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345851
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345851
    reference: chr 9
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000395965
  ensembl transcript: ENST00000422125
  gene symbol: PTGR1
  hgvsc: ENST00000422125.1:c.339C>G
  hgvsp: ENST00000422125.1:c.339C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*293C>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.27C>G
  hgvsp: ENST00000238248.3:c.27C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.396C>G
  hgvsp: ENST00000309195.5:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.396C>G
  hgvsp: ENST00000538962.1:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.396C>G
  hgvsp: ENST00000407693.2:c.396C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6599
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5277
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4149
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5589
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41444
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly132Gly
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP

9-114345856-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345856
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345856
    reference: chr 9
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*288T>A
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.391T>A
  hgvsp: ENSP00000440281.1:p.Phe131Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.22T>A
  hgvsp: ENSP00000238248.3:p.Phe8Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.391T>A
  hgvsp: ENSP00000385763.2:p.Phe131Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000395965
  ensembl transcript: ENST00000422125
  gene symbol: PTGR1
  hgvsc: ENST00000422125.1:c.334T>A
  hgvsp: ENSP00000395965.1:p.Phe112Ile
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.391T>A
  hgvsp: ENSP00000311572.5:p.Phe131Ile
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4195
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4579
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3501
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6256
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2416
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe131Ile
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

9-114345858-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345858
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345858
    reference: chr 9
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.389A>G
  hgvsp: ENSP00000385763.2:p.Tyr130Cys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*286A>G
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.389A>G
  hgvsp: ENSP00000440281.1:p.Tyr130Cys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.389A>G
  hgvsp: ENSP00000311572.5:p.Tyr130Cys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000395965
  ensembl transcript: ENST00000422125
  gene symbol: PTGR1
  hgvsc: ENST00000422125.1:c.332A>G
  hgvsp: ENSP00000395965.1:p.Tyr111Cys
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.20A>G
  hgvsp: ENSP00000238248.3:p.Tyr7Cys
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2729
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6598
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4194
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5278
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2989
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1219
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4147
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3500
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6257
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6202
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1889
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4063
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2415
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Tyr130Cys
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

9-114345876-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 114345876
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 114345876
    reference: chr 9
allele count: 2
allele frequency: 1.648994937585542e-5
allele num: 121286
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000363444
  ensembl transcript: ENST00000374324
  gene symbol: PTGR1
  hgvsc: ENST00000374324.1:c.*275-7C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000395965
  ensembl transcript: ENST00000422125
  gene symbol: PTGR1
  hgvsc: ENST00000422125.1:c.321-7C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000385763
  ensembl transcript: ENST00000407693
  gene symbol: PTGR1
  hgvsc: ENST00000407693.2:c.378-7C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000440281
  ensembl transcript: ENST00000538962
  gene symbol: PTGR1
  hgvsc: ENST00000538962.1:c.378-7C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000311572
  ensembl transcript: ENST00000309195
  gene symbol: PTGR1
  hgvsc: ENST00000309195.5:c.378-7C>T
  variant of: http://identifiers.org/hgnc/18429
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106853
  ensembl protein: ENSP00000238248
  ensembl transcript: ENST00000238248
  gene symbol: PTGR1
  hgvsc: ENST00000238248.3:c.9-7C>T
  variant of: http://identifiers.org/hgnc/18429
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4575
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2728
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1888
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 9.25e1
  variant carriers: 0
hgvs: c.378-7C>T
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 566
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 404
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 888
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10094
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15638
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.565827383189277e-5
allele num: 63864
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8316
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.471491e6

VQSLOD
type: SiteQuality
SIO_000300: 7.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.89e-1

FS
type: SiteQuality
SIO_000300: 2.089e0

MQRankSum
type: SiteQuality
SIO_000300: 1.82e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.011e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 185
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1809
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 240
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10184
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11296
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.548754801139884e-5
allele num: 64568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15996
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.79e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.808e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 3.431e0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.6e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.556e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.25e-1

DP
type: SiteQuality
SIO_000300: 1.489907e6

QD
type: SiteQuality
SIO_000300: 7.2e0

GenotypeQuality
all individuals: 218
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49067
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4670
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 221
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.748488984207447e-5
allele num: 10258
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65242
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.057e0

VQSLOD
type: SiteQuality
SIO_000300: 3.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.66e-1

QD
type: SiteQuality
SIO_000300: 1.264e1

FS
type: SiteQuality
SIO_000300: 1.888e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

DP
type: SiteQuality
SIO_000300: 1.506889e6

MQ
type: SiteQuality
SIO_000300: 5.968e1

GenotypeQuality
all individuals: 126
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1155
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 215
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 325
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.738994935722633e-5
allele num: 10268
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8454
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.123136270397697e-5
allele num: 65326
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.845699520118125e-4
allele num: 16254
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.76731544800982e-5
allele num: 11406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.9e-2

DP
type: SiteQuality
SIO_000300: 1.509468e6

QD
type: SiteQuality
SIO_000300: 7.77e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.531e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

MQ
type: SiteQuality
SIO_000300: 5.881e1

VQSLOD
type: SiteQuality
SIO_000300: -1.313e0

FS
type: SiteQuality
SIO_000300: 3.603e0

GenotypeQuality
all individuals: 1010
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4721
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49205
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 568
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1082
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10274
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.143260842855388e-5
allele num: 16278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528631263566603e-5
allele num: 65418
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.923e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.579e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.71e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

DP
type: SiteQuality
SIO_000300: 1.512508e6

MQ
type: SiteQuality
SIO_000300: 5.925e1

FS
type: SiteQuality
SIO_000300: 1.0997e1

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4742
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 49342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 148
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 2.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.595895431224041e-4
allele num: 65488
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.840264998159735e-4
allele num: 16302
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11420
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6572
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.66e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.3e-2

MQ
type: SiteQuality
SIO_000300: 5.93e1

FS
type: SiteQuality
SIO_000300: 5.56e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

DP
type: SiteQuality
SIO_000300: 1.513951e6

QD
type: SiteQuality
SIO_000300: 1.143e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.32e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.145e0

GenotypeQuality
all individuals: 99
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 169
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1227
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 49425
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.359603586597452e-4
allele num: 8476
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65558
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11422
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10296
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.79e-1

QD
type: SiteQuality
SIO_000300: 1.057e1

DP
type: SiteQuality
SIO_000300: 1.514851e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.87e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: -2.202e0

FS
type: SiteQuality
SIO_000300: 2.152e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

MQ
type: SiteQuality
SIO_000300: 5.813e1

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 194
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 537
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49198
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4815
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1681
bin: 9.75e1
variant carriers: 482

African
type: Population
allele count: 7
allele frequency: 6.776379477250726e-4
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 6
allele frequency: 6.666666666666667e-3
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 107
allele frequency: 1.625645700395017e-2
allele num: 6582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 358
allele frequency: 5.43445260793005e-3
allele num: 65876
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.111402130260171e-4
allele num: 11454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.916e1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.4e-3

QD
type: SiteQuality
SIO_000300: 1.275e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.65e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.85e0

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

DP
type: SiteQuality
SIO_000300: 1.536541e6

GenotypeQuality
all individuals: 1225
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1032
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49523
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 272
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.512401693889897e-5
allele num: 66120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11478
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16424
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.536927e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.531e0

VQSLOD
type: SiteQuality
SIO_000300: -2.274e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.718e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.542e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.93e0

MQRankSum
type: SiteQuality
SIO_000300: 4.49e-1

QD
type: SiteQuality
SIO_000300: 1.574e1

GenotypeQuality
all individuals: 153
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49459
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.706251088281386e-5
allele num: 11486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.652509652509652e-5
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 9.070843286064162e-5
allele num: 66146
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 1.537792e6

MQRankSum
type: SiteQuality
SIO_000300: 4.0e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.433e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

MQ
type: SiteQuality
SIO_000300: 5.92e1

VQSLOD
type: SiteQuality
SIO_000300: 1.79e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

QD
type: SiteQuality
SIO_000300: 1.136e1

GenotypeQuality
all individuals: 507
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1024
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5014
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49557
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 249
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 134
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1061
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020874241005347e-5
allele num: 66206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.64e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.540709e6

QD
type: SiteQuality
SIO_000300: 1.268e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.106e0

MQ
type: SiteQuality
SIO_000300: 5.827e1

VQSLOD
type: SiteQuality
SIO_000300: -2.102e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.580000000000001e-1

GenotypeQuality
all individuals: 113
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1228
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 495
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5004
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 290
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.608242044861763e-4
allele num: 11502
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.542408e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.1e-2

QD
type: SiteQuality
SIO_000300: 1.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.068e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 5.79e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.4e-2

MQ
type: SiteQuality
SIO_000300: 5.95e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.241e0

GenotypeQuality
all individuals: 204
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5030
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49720
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.509570678099149e-5
allele num: 66244
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.639e0

MQRankSum
type: SiteQuality
SIO_000300: 4.6e-2

DP
type: SiteQuality
SIO_000300: 1.543009e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.14e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.45e-1

QD
type: SiteQuality
SIO_000300: 1.13e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.13e-1

MQ
type: SiteQuality
SIO_000300: 5.934e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.31e-1

GenotypeQuality
all individuals: 129
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1067
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.206418144528894e-4
allele num: 66312
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.033980582524272e-4
allele num: 6592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16444
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 4.283e0

DP
type: SiteQuality
SIO_000300: 1.545043e6

VQSLOD
type: SiteQuality
SIO_000300: 5.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

MQ
type: SiteQuality
SIO_000300: 5.89e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.08e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

QD
type: SiteQuality
SIO_000300: 1.303e1

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1066
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1226
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
all individuals: 110
bin: 4.25e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1036
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.163602513381429e-4
allele num: 8594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66360
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16452
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10382
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.2e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.71e-1

DP
type: SiteQuality
SIO_000300: 1.546963e6

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.3e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.5e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.204e0

GenotypeQuality
all individuals: 64
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50268
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1229
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 246
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variant carriers: 0

GenotypeQuality
all individuals: 5122
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1032
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.00960062599693e-5
allele num: 66454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.161170459823502e-4
allele num: 8612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16468
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.812319538017325e-4
allele num: 10390
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.551245e6

BaseQRankSum
type: SiteQuality
SIO_000300: -9.62e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.17e0

MQ
type: SiteQuality
SIO_000300: 5.902e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.53e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

QD
type: SiteQuality
SIO_000300: 1.262e1

FS
type: SiteQuality
SIO_000300: 3.199e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
all individuals: 1069
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1033
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 306
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50342
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1223
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66472
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.213739531496541e-4
allele num: 16478
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.64e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

MQ
type: SiteQuality
SIO_000300: 5.906e1

DP
type: SiteQuality
SIO_000300: 1.551996e6

VQSLOD
type: SiteQuality
SIO_000300: -3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 6.363e0

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

QD
type: SiteQuality
SIO_000300: 1.077e1

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1230
bin: 9.75e1
variant carriers: 9

GenotypeQuality
all individuals: 554
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
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variant carriers: 0

GenotypeQuality
all individuals: 1037
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50472
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 247
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.668515950069348e-5
allele num: 11536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.698229407236335e-4
allele num: 10392
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.312e0

MQ
type: SiteQuality
SIO_000300: 5.869e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.1e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.5e-1

DP
type: SiteQuality
SIO_000300: 1.553112e6

VQSLOD
type: SiteQuality
SIO_000300: 5.98e-1

QD
type: SiteQuality
SIO_000300: 1.221e1

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1222
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 37
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 555
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variant carriers: 0

GenotypeQuality
all individuals: 1073
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1041
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 246
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11542
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159823706796567e-4
allele num: 8622
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 4.055e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.0e-2

QD
type: SiteQuality
SIO_000300: 1.183e1

MQRankSum
type: SiteQuality
SIO_000300: -3.0e-2

DP
type: SiteQuality
SIO_000300: 1.55314e6

MQ
type: SiteQuality
SIO_000300: 5.916e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.7e-1

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 556
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GenotypeQuality
all individuals: 1224
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 28
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1042
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16492
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.506940688660537e-5
allele num: 66564
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.277e1

VQSLOD
type: SiteQuality
SIO_000300: 2.41e-1

MQ
type: SiteQuality
SIO_000300: 5.928e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.41e0

FS
type: SiteQuality
SIO_000300: 6.025e0

DP
type: SiteQuality
SIO_000300: 1.554457e6

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.88e-1

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
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GenotypeQuality
all individuals: 30
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 7.25e1
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GenotypeQuality
all individuals: 1221
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variant carriers: 1

GenotypeQuality
all individuals: 1046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.339e0

DP
type: SiteQuality
SIO_000300: 1.554491e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 2.37e0

QD
type: SiteQuality
SIO_000300: 7.64e0

MQ
type: SiteQuality
SIO_000300: 5.842e1

FS
type: SiteQuality
SIO_000300: 6.073e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.896e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.555e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.215e0

GenotypeQuality
all individuals: 279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1046
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 559
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GenotypeQuality
all individuals: 247
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5156
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.212268153715602e-4
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.554752e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

FS
type: SiteQuality
SIO_000300: 1.774e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

QD
type: SiteQuality
SIO_000300: 1.029e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.64e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

GenotypeQuality
all individuals: 279
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 197
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GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 50701
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8636
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004175804368072e-5
allele num: 66574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.774e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.3e-2

DP
type: SiteQuality
SIO_000300: 1.554752e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.64e-1

MQ
type: SiteQuality
SIO_000300: 5.903e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

QD
type: SiteQuality
SIO_000300: 1.029e1

GenotypeQuality
all individuals: 1040
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1221
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 558
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5135
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1074
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.615384615384615e-5
allele num: 10400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.55e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.04e0

VQSLOD
type: SiteQuality
SIO_000300: -4.231e-1

DP
type: SiteQuality
SIO_000300: 1.553364e6

FS
type: SiteQuality
SIO_000300: 6.61e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

QD
type: SiteQuality
SIO_000300: 1.615e1

GenotypeQuality
all individuals: 50
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 550
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5098
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1062
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06501698204755e-5
allele num: 16488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66572
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.549972e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

QD
type: SiteQuality
SIO_000300: 3.393e1

MQ
type: SiteQuality
SIO_000300: 5.9e1

MQRankSum
type: SiteQuality
SIO_000300: -6.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.217e0

GenotypeQuality
all individuals: 733
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43917
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4821
bin: 6.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 129
allele frequency: 1.93984962406015e-3
allele num: 66500
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.733358984224702e-4
allele num: 10396
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.330504070673827e-4
allele num: 11546
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.322e1

MQRankSum
type: SiteQuality
SIO_000300: 2.01e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.1e0

VQSLOD
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-2

DP
type: SiteQuality
SIO_000300: 1.526617e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 1.179e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.33e-1

GenotypeQuality
all individuals: 89
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1211
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 287
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 912
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8612
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66398
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.79e-1

QD
type: SiteQuality
SIO_000300: 8.07e0

DP
type: SiteQuality
SIO_000300: 1.517662e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.972e-1

FS
type: SiteQuality
SIO_000300: 1.129e0

MQ
type: SiteQuality
SIO_000300: 5.812e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.99e-1

GenotypeQuality
all individuals: 3525
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4976
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 4452
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1190
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 7436
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3342
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.40805406927626e-4
allele num: 7102
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.721435316336166e-4
allele num: 10590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.975773701162302e-4
allele num: 57128
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.763046544428773e-4
allele num: 5672
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 3.273322422258593e-4
allele num: 12220
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.246686137946529e-4
allele num: 8902
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.262626262626263e-3
allele num: 792
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.082e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 7.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

DP
type: SiteQuality
SIO_000300: 1.646589e6

FS
type: SiteQuality
SIO_000300: 2.2733e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.239e0

GenotypeQuality
all individuals: 3367
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 365
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1323
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4976
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.251365354992298e-5
allele num: 57128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.763046544428773e-4
allele num: 5672
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12220
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7102
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.082e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

FS
type: SiteQuality
SIO_000300: 2.2733e1

MQ
type: SiteQuality
SIO_000300: 5.945e1

QD
type: SiteQuality
SIO_000300: 7.3e-1

DP
type: SiteQuality
SIO_000300: 1.646589e6

MQRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.24e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.239e0

GenotypeQuality
all individuals: 1850
bin: 9.75e1
variant carriers: 46

GenotypeQuality
all individuals: 6716
bin: 2.25e1
variant carriers: 50

GenotypeQuality
all individuals: 407
bin: 8.75e1
variant carriers: 8

GenotypeQuality
all individuals: 658
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 5246
bin: 6.25e1
variant carriers: 8

African
type: Population
allele count: 3
allele frequency: 3.57057843370626e-4
allele num: 8402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 73
allele frequency: 1.359758596282085e-3
allele num: 53686
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 4.087193460490463e-3
allele num: 734
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.001669449081803e-3
allele num: 5990
num of homozygotes: 0

East Asian
type: Population
allele count: 36
allele frequency: 5.571030640668524e-3
allele num: 6462
num of homozygotes: 1

South Asian
type: Population
allele count: 96
allele frequency: 8.40042002100105e-3
allele num: 11428
num of homozygotes: 0

Latino
type: Population
allele count: 33
allele frequency: 3.433208489388265e-3
allele num: 9612
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

QD
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 1.643506e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

GenotypeQuality
all individuals: 4145
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1715
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6463
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 407
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5939
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 658
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 2
allele frequency: 2.38038562247084e-4
allele num: 8402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 2.421487911187274e-4
allele num: 53686
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 3.095017022593624e-4
allele num: 6462
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 3.121098626716604e-4
allele num: 9612
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5990
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.750087504375219e-4
allele num: 11428
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.75e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.9e-1

DP
type: SiteQuality
SIO_000300: 1.643506e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.6e-2

QD
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.42e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1816
bin: 6.25e1
variant carriers: 485

GenotypeQuality
all individuals: 1130
bin: 8.75e1
variant carriers: 292

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 236

GenotypeQuality
all individuals: 1374
bin: 7.75e1
variant carriers: 348

GenotypeQuality
all individuals: 1516
bin: 7.25e1
variant carriers: 401

Latino
type: Population
allele count: 669
allele frequency: 1.001197246333433e-1
allele num: 6682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 567
allele frequency: 1.447906026557712e-1
allele num: 3916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4765
allele frequency: 1.321262200532387e-1
allele num: 36064
num of homozygotes: 0

Other
type: Population
allele count: 74
allele frequency: 1.439688715953307e-1
allele num: 514
num of homozygotes: 0

South Asian
type: Population
allele count: 628
allele frequency: 8.984263233190272e-2
allele num: 6990
num of homozygotes: 0

African
type: Population
allele count: 755
allele frequency: 1.489151873767258e-1
allele num: 5070
num of homozygotes: 0

East Asian
type: Population
allele count: 425
allele frequency: 9.06183368869936e-2
allele num: 4690
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.06e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.783e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

DP
type: SiteQuality
SIO_000300: 1.429274e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

GenotypeQuality
all individuals: 1994
bin: 1.75e1
variant carriers: 48

GenotypeQuality
all individuals: 920
bin: 9.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1516
bin: 7.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1130
bin: 8.75e1
variant carriers: 15

GenotypeQuality
all individuals: 2196
bin: 3.75e1
variant carriers: 31

European (Non-Finnish)
type: Population
allele count: 221
allele frequency: 6.127994676131322e-3
allele num: 36064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 23
allele frequency: 5.873340143003065e-3
allele num: 3916
num of homozygotes: 0

South Asian
type: Population
allele count: 35
allele frequency: 5.007153075822604e-3
allele num: 6990
num of homozygotes: 0

African
type: Population
allele count: 45
allele frequency: 8.875739644970414e-3
allele num: 5070
num of homozygotes: 0

East Asian
type: Population
allele count: 16
allele frequency: 3.411513859275053e-3
allele num: 4690
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 5.836575875486381e-3
allele num: 514
num of homozygotes: 0

Latino
type: Population
allele count: 56
allele frequency: 8.380724334031727e-3
allele num: 6682
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

DP
type: SiteQuality
SIO_000300: 1.429274e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 2.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.783e-1

GenotypeQuality
all individuals: 1683
bin: 6.75e1
variant carriers: 912

GenotypeQuality
all individuals: 2163
bin: 4.75e1
variant carriers: 1141

GenotypeQuality
all individuals: 1816
bin: 6.25e1
variant carriers: 994

GenotypeQuality
all individuals: 1374
bin: 7.75e1
variant carriers: 765

GenotypeQuality
all individuals: 2142
bin: 3.25e1
variant carriers: 1023

European (Finnish)
type: Population
allele count: 1006
allele frequency: 2.568947906026558e-1
allele num: 3916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 9996
allele frequency: 2.771739130434783e-1
allele num: 36064
num of homozygotes: 0

South Asian
type: Population
allele count: 1908
allele frequency: 2.729613733905579e-1
allele num: 6990
num of homozygotes: 0

Latino
type: Population
allele count: 1803
allele frequency: 2.698293923974858e-1
allele num: 6682
num of homozygotes: 0

Other
type: Population
allele count: 128
allele frequency: 2.490272373540856e-1
allele num: 514
num of homozygotes: 0

East Asian
type: Population
allele count: 1174
allele frequency: 2.50319829424307e-1
allele num: 4690
num of homozygotes: 0

African
type: Population
allele count: 1378
allele frequency: 2.717948717948718e-1
allele num: 5070
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

DP
type: SiteQuality
SIO_000300: 1.429274e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.783e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

QD
type: SiteQuality
SIO_000300: 2.06e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

GenotypeQuality
all individuals: 1816
bin: 6.25e1
variant carriers: 107

GenotypeQuality
all individuals: 1516
bin: 7.25e1
variant carriers: 111

GenotypeQuality
all individuals: 2196
bin: 3.75e1
variant carriers: 143

GenotypeQuality
all individuals: 6076
bin: 9.75e1
variant carriers: 326

GenotypeQuality
all individuals: 1252
bin: 8.25e1
variant carriers: 92

European (Non-Finnish)
type: Population
allele count: 1180
allele frequency: 3.271960958296362e-2
allele num: 36064
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 91
allele frequency: 2.323799795709908e-2
allele num: 3916
num of homozygotes: 0

South Asian
type: Population
allele count: 256
allele frequency: 3.662374821173105e-2
allele num: 6990
num of homozygotes: 0

African
type: Population
allele count: 155
allele frequency: 3.057199211045365e-2
allele num: 5070
num of homozygotes: 0

East Asian
type: Population
allele count: 165
allele frequency: 3.518123667377399e-2
allele num: 4690
num of homozygotes: 0

Latino
type: Population
allele count: 204
allele frequency: 3.052978150254415e-2
allele num: 6682
num of homozygotes: 0

Other
type: Population
allele count: 10
allele frequency: 1.945525291828794e-2
allele num: 514
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.06e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.429274e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.783e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

European (Non-Finnish)
type: Population
allele count: 302
allele frequency: 8.374001774622893e-3
allele num: 36064
num of homozygotes: 0

Latino
type: Population
allele count: 61
allele frequency: 9.129003292427417e-3
allele num: 6682
num of homozygotes: 0

East Asian
type: Population
allele count: 53
allele frequency: 1.130063965884861e-2
allele num: 4690
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.783e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

DP
type: SiteQuality
SIO_000300: 1.429274e6

MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 2.06e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

African
type: Population
allele count: 13
allele frequency: 2.564102564102564e-3
allele num: 5070
num of homozygotes: 0

South Asian
type: Population
allele count: 18
allele frequency: 2.575107296137339e-3
allele num: 6990
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.945525291828794e-3
allele num: 514
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.783e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-2

VQSLOD
type: SiteQuality
SIO_000300: 3.31e0

MQ
type: SiteQuality
SIO_000300: 5.914e1

QD
type: SiteQuality
SIO_000300: 2.06e0

DP
type: SiteQuality
SIO_000300: 1.429274e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.37e-1

GenotypeQuality
all individuals: 330
bin: 8.75e1
variant carriers: 314

GenotypeQuality
all individuals: 586
bin: 4.75e1
variant carriers: 313

GenotypeQuality
all individuals: 759
bin: 3.25e1
variant carriers: 290

GenotypeQuality
all individuals: 382
bin: 6.75e1
variant carriers: 314

GenotypeQuality
all individuals: 3749
bin: 9.75e1
variant carriers: 3713

South Asian
type: Population
allele count: 1438
allele frequency: 3.865591397849462e-1
allele num: 3720
num of homozygotes: 5

African
type: Population
allele count: 122
allele frequency: 1.115173674588665e-1
allele num: 1094
num of homozygotes: 0

East Asian
type: Population
allele count: 1144
allele frequency: 4.175182481751825e-1
allele num: 2740
num of homozygotes: 7

Other
type: Population
allele count: 67
allele frequency: 3.25242718446602e-1
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 1298
allele frequency: 3.856209150326798e-1
allele num: 3366
num of homozygotes: 9

European (Finnish)
type: Population
allele count: 550
allele frequency: 3.835425383542538e-1
allele num: 1434
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 3336
allele frequency: 3.221943210353487e-1
allele num: 10354
num of homozygotes: 5

FS
type: SiteQuality
SIO_000300: 5.957e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

DP
type: SiteQuality
SIO_000300: 9.36614e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.551e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.73e0

MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

MQ
type: SiteQuality
SIO_000300: 5.993e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.29e-1

QD
type: SiteQuality
SIO_000300: 3.68e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.62e0

GenotypeQuality
all individuals: 230
bin: 8.25e1
variant carriers: 13

GenotypeQuality
all individuals: 3708
bin: 2.25e1
variant carriers: 105

GenotypeQuality
all individuals: 998
bin: 4.75e1
variant carriers: 52

GenotypeQuality
all individuals: 1255
bin: 3.75e1
variant carriers: 75

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 15

Latino
type: Population
allele count: 121
allele frequency: 3.335170893054024e-2
allele num: 3628
num of homozygotes: 0

East Asian
type: Population
allele count: 110
allele frequency: 4.39297124600639e-2
allele num: 2504
num of homozygotes: 0

African
type: Population
allele count: 14
allele frequency: 4.723346828609987e-3
allele num: 2964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 260
allele frequency: 1.564945226917058e-2
allele num: 16614
num of homozygotes: 0

South Asian
type: Population
allele count: 152
allele frequency: 3.591682419659736e-2
allele num: 4232
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 23
allele frequency: 1.081843838193791e-2
allele num: 2126
num of homozygotes: 0

Other
type: Population
allele count: 8
allele frequency: 2.985074626865672e-2
allele num: 268
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.817e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 3.67e-1

MQ
type: SiteQuality
SIO_000300: 5.956e1

DP
type: SiteQuality
SIO_000300: 1.66552e6

QD
type: SiteQuality
SIO_000300: 6.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.051e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

VQSLOD
type: SiteQuality
SIO_000300: -6.866e-1

GenotypeQuality
all individuals: 2056
bin: 7.5e0
variant carriers: 24

GenotypeQuality
all individuals: 1360
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 3487
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1879
bin: 4.75e1
variant carriers: 12

GenotypeQuality
all individuals: 11129
bin: 6.25e1
variant carriers: 8

African
type: Population
allele count: 1
allele frequency: 1.358326541700625e-4
allele num: 7362
num of homozygotes: 0

Latino
type: Population
allele count: 23
allele frequency: 2.845126175160812e-3
allele num: 8084
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 59
allele frequency: 1.320796955451086e-3
allele num: 44670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.176470588235294e-3
allele num: 5100
num of homozygotes: 0

South Asian
type: Population
allele count: 29
allele frequency: 2.762957317073171e-3
allele num: 10496
num of homozygotes: 0

East Asian
type: Population
allele count: 26
allele frequency: 4.68975468975469e-3
allele num: 5544
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 3.215434083601286e-3
allele num: 622
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -5.12e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.235e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.91e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.518e0

MQ
type: SiteQuality
SIO_000300: 5.917e1

DP
type: SiteQuality
SIO_000300: 1.706851e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.31e0

GenotypeQuality
all individuals: 19306
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 522
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 5817
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2407
bin: 9.75e1
variant carriers: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.882675122513693e-4
allele num: 13876
num of homozygotes: 0

East Asian
type: Population
allele count: 6
allele frequency: 8.312551953449709e-4
allele num: 7218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.038673268012326e-4
allele num: 57766
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 4.798464491362764e-4
allele num: 10420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9128
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 3
allele frequency: 4.878048780487805e-4
allele num: 6150
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.07e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.34e0

MQ
type: SiteQuality
SIO_000300: 5.916e1

VQSLOD
type: SiteQuality
SIO_000300: -1.216e0

QD
type: SiteQuality
SIO_000300: 7.3e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.327e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

DP
type: SiteQuality
SIO_000300: 1.646276e6

GenotypeQuality
all individuals: 7004
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2805
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2485
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24064
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 61898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7712
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6440
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15112
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.8e-3

DP
type: SiteQuality
SIO_000300: 1.611925e6

VQSLOD
type: SiteQuality
SIO_000300: -2.567e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.23e-1

FS
type: SiteQuality
SIO_000300: 5.375e0

QD
type: SiteQuality
SIO_000300: 4.7e-1

MQ
type: SiteQuality
SIO_000300: 5.705e1

MQRankSum
type: SiteQuality
SIO_000300: -2.104e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.178e0

GenotypeQuality
all individuals: 7054
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2541
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.963786303334529e-5
allele num: 11156
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15376
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.434e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.87e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 2.4661e1

VQSLOD
type: SiteQuality
SIO_000300: -5.362e0

MQ
type: SiteQuality
SIO_000300: 5.933e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.772e0

MQRankSum
type: SiteQuality
SIO_000300: 8.9e-1

DP
type: SiteQuality
SIO_000300: 1.557866e6

GenotypeQuality
all individuals: 1973
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 718
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10041
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1266
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 2.719854941069809e-4
allele num: 11030
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 4
allele frequency: 6.207324643078833e-4
allele num: 6444
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9662
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 8.083551589226243e-5
allele num: 61854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15140
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.785e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

VQSLOD
type: SiteQuality
SIO_000300: -7.341e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-3

MQ
type: SiteQuality
SIO_000300: 5.827e1

QD
type: SiteQuality
SIO_000300: 1.286e1

MQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

FS
type: SiteQuality
SIO_000300: 5.019e0

DP
type: SiteQuality
SIO_000300: 1.515146e6

GenotypeQuality
all individuals: 5043
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19550
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1585
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 443
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.706484641638225e-5
allele num: 58600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9228
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.137758743754462e-5
allele num: 14010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6252
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7136
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.300000000000001e0

DP
type: SiteQuality
SIO_000300: 1.483838e6

MQ
type: SiteQuality
SIO_000300: 5.889e1

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.346e0

FS
type: SiteQuality
SIO_000300: 3.928e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -6.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.07e0

GenotypeQuality
all individuals: 2250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1189
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 926
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1422
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 9.25e1
variant carriers: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58600
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10534
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.137758743754462e-5
allele num: 14010
num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.346e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.3e-2

VQSLOD
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FS
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.889e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.07e-1

DP
type: SiteQuality
SIO_000300: 1.483838e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9318
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6376
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.383891502906172e-4
allele num: 7226
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 14140
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10746
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 59274
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.68e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

DP
type: SiteQuality
SIO_000300: 1.258404e6

MQRankSum
type: SiteQuality
SIO_000300: 2.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.151e-1

QD
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MQ
type: SiteQuality
SIO_000300: 5.739e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7046
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6338
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9138
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Latino
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allele frequency: 9.375585974123383e-5
allele num: 10666
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 13576
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 58134
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

VQSLOD
type: SiteQuality
SIO_000300: -3.002e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

MQ
type: SiteQuality
SIO_000300: 5.925e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

DP
type: SiteQuality
SIO_000300: 1.183635e6

QD
type: SiteQuality
SIO_000300: 9.59e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 6

GenotypeQuality
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variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.794494490901913e-5
allele num: 55726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
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African
type: Population
allele count: 4
allele frequency: 4.553734061930783e-4
allele num: 8784
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.072e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.127677e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

QD
type: SiteQuality
SIO_000300: 1.217e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12390
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10340
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.794494490901913e-5
allele num: 55726
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8784
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.95e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.072e0

DP
type: SiteQuality
SIO_000300: 1.127677e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.217e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.9e-2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6460
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.21758188238159e-4
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500690317546071e-5
allele num: 66636
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.09e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.22e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.99e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 5.53e-1

QD
type: SiteQuality
SIO_000300: 1.552e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.38e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.348604e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 6578
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 144
allele frequency: 1.384615384615385e-2
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.001020346917952e-5
allele num: 66644
num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.086427267194157e-5
allele num: 16430
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.88e0

FS
type: SiteQuality
SIO_000300: 8.39e-1

QD
type: SiteQuality
SIO_000300: 1.489e1

MQRankSum
type: SiteQuality
SIO_000300: 3.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.78e0

DP
type: SiteQuality
SIO_000300: 3.350808e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.12e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
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South Asian
type: Population
allele count: 1
allele frequency: 6.087909411907951e-5
allele num: 16426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
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MQRankSum
type: SiteQuality
SIO_000300: -1.501e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.136e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.442e0

FS
type: SiteQuality
SIO_000300: 1.019e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.6e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.6e-3

MQ
type: SiteQuality
SIO_000300: 5.982e1

QD
type: SiteQuality
SIO_000300: 1.708e1

DP
type: SiteQuality
SIO_000300: 3.34533e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16432
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European (Non-Finnish)
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allele count: 3
allele frequency: 4.501530520376928e-5
allele num: 66644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
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allele num: 908
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VQSLOD
type: SiteQuality
SIO_000300: 8.76e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 8.1e-3

MQ
type: SiteQuality
SIO_000300: 5.937e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.45e-1

FS
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.85e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8650
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European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
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South Asian
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Latino
type: Population
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

Other
type: Population
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InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

DP
type: SiteQuality
SIO_000300: 3.35077e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.53e-1

BaseQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.47e-1

FS
type: SiteQuality
SIO_000300: 2.313e0

QD
type: SiteQuality
SIO_000300: 1.044e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.86e-1

MQ
type: SiteQuality
SIO_000300: 5.927e1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.312138728323699e-4
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
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Other
type: Population
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allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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MQ
type: SiteQuality
SIO_000300: 5.988e1

QD
type: SiteQuality
SIO_000300: 1.546e1

MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.351809e6

VQSLOD
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FS
type: SiteQuality
SIO_000300: 2.432e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.2e-3

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2124
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GenotypeQuality
all individuals: 1206
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
allele num: 8650
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.077549532028686e-5
allele num: 16454
num of homozygotes: 0

Latino
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.352542e6

FS
type: SiteQuality
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ReadPosRankSum
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VQSLOD
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QD
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BaseQRankSum
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
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allele frequency: 1.15606936416185e-4
allele num: 8650
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16454
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66664
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10402
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.956e1

MQRankSum
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FS
type: SiteQuality
SIO_000300: 1.1014e1

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.29e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66674
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
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East Asian
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allele frequency: 0.0e0
allele num: 8650
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 3
allele frequency: 2.884060757546626e-4
allele num: 10402
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South Asian
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allele frequency: 0.0e0
allele num: 16472
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Other
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allele num: 908
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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ReadPosRankSum
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QD
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MQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 5
allele frequency: 4.804920238324044e-4
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele frequency: 8.637070305752289e-4
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
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allele count: 67
allele frequency: 1.004166541770331e-3
allele num: 66722
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South Asian
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allele num: 16510
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Other
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allele num: 908
num of homozygotes: 0

East Asian
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allele num: 8654
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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InbreedingCoeff
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MQ
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FS
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VQSLOD
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DP
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele num: 11578
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African
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 3.7e-1

FS
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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ClippingRankSum
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DP
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InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 5
allele frequency: 4.318535152876144e-4
allele num: 11578
num of homozygotes: 0

South Asian
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
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East Asian
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allele frequency: 0.0e0
allele num: 8654
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.98e-1

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
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QD
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.996973057212216e-5
allele num: 66734
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.96e-1

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 5.3e-1

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 3.353615e6

MQ
type: SiteQuality
SIO_000300: 5.994e1

MQRankSum
type: SiteQuality
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66738
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South Asian
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allele num: 16510
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East Asian
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MQ
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ClippingRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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European (Finnish)
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South Asian
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East Asian
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Latino
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Other
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European (Non-Finnish)
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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FS
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VQSLOD
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BaseQRankSum
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DP
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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Other
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African
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European (Non-Finnish)
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Latino
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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BaseQRankSum
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FS
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MQRankSum
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QD
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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South Asian
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Other
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FS
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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InbreedingCoeff
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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Latino
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 1.498351813005694e-5
allele num: 66740
num of homozygotes: 0

MQ
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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FS
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 3.353228e6

QD
type: SiteQuality
SIO_000300: 1.402e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.79e-1

GenotypeQuality
all individuals: 2547
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2419
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

MQ
type: SiteQuality
SIO_000300: 5.977e1

QD
type: SiteQuality
SIO_000300: 1.208e1

VQSLOD
type: SiteQuality
SIO_000300: 1.98e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 3.353284e6

MQRankSum
type: SiteQuality
SIO_000300: 7.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

FS
type: SiteQuality
SIO_000300: 2.497e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2420
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.4983967155144e-5
allele num: 66738
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.353101e6

MQRankSum
type: SiteQuality
SIO_000300: 2.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.16e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.6e-2

FS
type: SiteQuality
SIO_000300: 7.707e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.072e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

QD
type: SiteQuality
SIO_000300: 1.588e1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
all individuals: 7871
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1948
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2120
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.101321585903084e-3
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.1e0

QD
type: SiteQuality
SIO_000300: 1.547e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.03e-1

MQ
type: SiteQuality
SIO_000300: 5.973e1

FS
type: SiteQuality
SIO_000300: 1.451e0

VQSLOD
type: SiteQuality
SIO_000300: 8.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

DP
type: SiteQuality
SIO_000300: 3.352912e6

GenotypeQuality
all individuals: 1128
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7873
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41444
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.44e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.997e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.745e0

FS
type: SiteQuality
SIO_000300: 2.805e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e0

DP
type: SiteQuality
SIO_000300: 3.352835e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.115e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.566e1

GenotypeQuality
all individuals: 2
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2119
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2546
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41444
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66724
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.2e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

MQRankSum
type: SiteQuality
SIO_000300: 7.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -2.178e0

VQSLOD
type: SiteQuality
SIO_000300: 9.9e-2

QD
type: SiteQuality
SIO_000300: 1.652e1

DP
type: SiteQuality
SIO_000300: 3.352743e6

BaseQRankSum
type: SiteQuality
SIO_000300: 6.4e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0