10-52504979-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52504979
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52504979
    reference: chr 10
allele count: 1
allele frequency: 5.841121495327102e-4
allele num: 1712
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363119
  ensembl transcript: ENST00000374007
  gene symbol: ASAH2B
  hgvsc: ENST00000374007.1:c.89C>T
  hgvsp: ENSP00000363119.1:p.Pro30Leu
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000185907
  ensembl transcript: ENST00000185907
  gene symbol: ASAH2B
  hgvsc: ENST00000185907.9:c.89C>T
  hgvsp: ENSP00000185907.9:p.Pro30Leu
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363118
  ensembl transcript: ENST00000374006
  gene symbol: ASAH2B
  hgvsc: ENST00000374006.1:c.104C>T
  hgvsp: ENSP00000363118.1:p.Pro35Leu
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.128+2209C>T
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2736
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2659
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 562
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Pro35Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-52504984-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52504984
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52504984
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 426
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363119
  ensembl transcript: ENST00000374007
  gene symbol: ASAH2B
  hgvsc: ENST00000374007.1:c.94G>A
  hgvsp: ENSP00000363119.1:p.Gly32Ser
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.128+2214G>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363118
  ensembl transcript: ENST00000374006
  gene symbol: ASAH2B
  hgvsc: ENST00000374006.1:c.109G>A
  hgvsp: ENSP00000363118.1:p.Gly37Ser
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000185907
  ensembl transcript: ENST00000185907
  gene symbol: ASAH2B
  hgvsc: ENST00000185907.9:c.94G>A
  hgvsp: ENSP00000185907.9:p.Gly32Ser
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2768
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2444
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly37Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD

10-52505076-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52505076
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52505076
    reference: chr 10
allele count: 1
allele frequency: 6.329113924050633e-3
allele num: 158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000185907
  ensembl transcript: ENST00000185907
  gene symbol: ASAH2B
  hgvsc: ENST00000185907.9:c.144+42T>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.128+2306T>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363119
  ensembl transcript: ENST00000374007
  gene symbol: ASAH2B
  hgvsc: ENST00000374007.1:c.144+42T>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363118
  ensembl transcript: ENST00000374006
  gene symbol: ASAH2B
  hgvsc: ENST00000374006.1:c.159+42T>C
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1242
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-52509066-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52509066
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52509066
    reference: chr 10
allele count: 39
allele frequency: 7.5e-1
allele num: 52
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363119
  ensembl transcript: ENST00000374007
  gene symbol: ASAH2B
  hgvsc: ENST00000374007.1:c.145-37G>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.129-37G>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363118
  ensembl transcript: ENST00000374006
  gene symbol: ASAH2B
  hgvsc: ENST00000374006.1:c.160-37G>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000185907
  ensembl transcript: ENST00000185907
  gene symbol: ASAH2B
  hgvsc: ENST00000185907.9:c.145-37G>T
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.5e0
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 374
  bin: 2.5e0
  variant carriers: 153
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 1.25e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 7.5e0
  variant carriers: 92
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 10
num of homozygotes: 14
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

10-52509119-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52509119
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52509119
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 16
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363118
  ensembl transcript: ENST00000374006
  gene symbol: ASAH2B
  hgvsc: ENST00000374006.1:c.176T>G
  hgvsp: ENSP00000363118.1:p.Val59Gly
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000185907
  ensembl transcript: ENST00000185907
  gene symbol: ASAH2B
  hgvsc: ENST00000185907.9:c.161T>G
  hgvsp: ENSP00000185907.9:p.Val54Gly
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363119
  ensembl transcript: ENST00000374007
  gene symbol: ASAH2B
  hgvsc: ENST00000374007.1:c.161T>G
  hgvsp: ENSP00000363119.1:p.Val54Gly
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.145T>G
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val59Gly
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD

10-52514364-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52514364
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52514364
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 46
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363118
  ensembl transcript: ENST00000374006
  gene symbol: ASAH2B
  hgvsc: ENST00000374006.1:c.362A>G
  hgvsp: ENSP00000363118.1:p.His121Arg
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363119
  ensembl transcript: ENST00000374007
  gene symbol: ASAH2B
  hgvsc: ENST00000374007.1:c.347A>G
  hgvsp: ENSP00000363119.1:p.His116Arg
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.277+2048A>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000185907
  ensembl transcript: ENST00000185907
  gene symbol: ASAH2B
  hgvsc: ENST00000185907.9:c.347A>G
  hgvsp: ENSP00000185907.9:p.His116Arg
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3114
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 314
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His121Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: A
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum

10-52514516-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52514516
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52514516
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 120
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000185907
  ensembl transcript: ENST00000185907
  gene symbol: ASAH2B
  hgvsc: ENST00000185907.9:c.*16T>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363119
  ensembl transcript: ENST00000374007
  gene symbol: ASAH2B
  hgvsc: ENST00000374007.1:c.*16T>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.277+2200T>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363118
  ensembl transcript: ENST00000374006
  gene symbol: ASAH2B
  hgvsc: ENST00000374006.1:c.*16T>A
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: 3' UTR
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 309
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2986
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ

10-52514529-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52514529
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52514529
    reference: chr 10
allele count: 1
allele frequency: 1.25e-2
allele num: 80
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363118
  ensembl transcript: ENST00000374006
  gene symbol: ASAH2B
  hgvsc: ENST00000374006.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000185907
  ensembl transcript: ENST00000185907
  gene symbol: ASAH2B
  hgvsc: ENST00000185907.9:c.*29A>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000204147
  ensembl protein: ENSP00000363119
  ensembl transcript: ENST00000374007
  gene symbol: ASAH2B
  hgvsc: ENST00000374007.1:c.*29A>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.277+2213A>G
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2329
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2000
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD

10-52566442-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566442
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566442
    reference: chr 10
allele count: 1
allele frequency: 9.277298450691159e-6
allele num: 107790
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.*47A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.*47A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.*47A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.*47A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.*47A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.*47A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+351T>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.*47A>G
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5323
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10305
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11812
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7056
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1727
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1680
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1975
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2519
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13061
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3870
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5654
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum

10-52566444-T-TA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566444
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566445
    reference: chr 10
allele count: 8
allele frequency: 7.446848121532561e-5
allele num: 107428
alternate allele: TA
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.*44dupT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.*44dupT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.*44dupT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.*44dupT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.*44dupT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+355dupA
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.*44dupT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.*44dupT
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7195
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1129
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8071
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12567
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1739
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5836
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5276
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3610
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11704
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3212
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3302
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2468
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 354
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3717
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff

10-52566447-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566447
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566447
    reference: chr 10
allele count: 15
allele frequency: 1.382233689642462e-4
allele num: 108520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.*42A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+356T>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.*42A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.*42A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.*42A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.*42A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.*42A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.*42A>G
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14185
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5245
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3592
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1772
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7021
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13132
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3680
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 587
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7614
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3601
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2666
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5085
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 7011
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2216
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

10-52566454-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566454
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566454
    reference: chr 10
allele count: 1
allele frequency: 9.031139368542735e-6
allele num: 110728
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.*35A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.*35A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.*35A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.*35A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.*35A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.*35A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+363T>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.*35A>G
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5566
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1561
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8211
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23941
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP

10-52566454-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566454
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566454
    reference: chr 10
allele count: 1
allele frequency: 9.031139368542735e-6
allele num: 110728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.*35A>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.*35A>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+363T>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.*35A>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.*35A>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.*35A>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.*35A>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.*35A>C
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 18661
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14340
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 959
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1808
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1415
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23941
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1180
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

10-52566462-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566462
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566460
    reference: chr 10
allele count: 1
allele frequency: 8.887308922858158e-6
allele num: 112520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.*25_*26delAA
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.*25_*26delAA
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.*25_*26delAA
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.*25_*26delAA
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.*25_*26delAA
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.*25_*26delAA
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+372_516+373delTT
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.*25_*26delAA
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: 3' UTR
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 3934
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 917
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1829
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 444
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1230
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2945
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4433
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
reference allele: CTT
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

10-52566483-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566483
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566483
    reference: chr 10
allele count: 6
allele frequency: 5.112213077041051e-5
allele num: 117366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.*6C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.*6C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.*6C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.*6C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.*6C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.*6C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.*6C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+392G>A
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3975
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1026
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15901
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1869
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8873
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4325
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3432
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28975
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: QD

10-52566485-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566485
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566485
    reference: chr 10
allele count: 1
allele frequency: 8.478168715557439e-6
allele num: 117950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.*4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.*4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+394A>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.*4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.*4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.*4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.*4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.*4T>C
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 939
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8892
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3982
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1619
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23561
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1620
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4339
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: DP

10-52566500-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566500
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566500
    reference: chr 10
allele count: 3
allele frequency: 2.49513448774889e-5
allele num: 120234
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1753G>A
  hgvsp: ENSP00000378868.2:p.Gly585Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+409C>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1774G>A
  hgvsp: ENSP00000363105.1:p.Gly592Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1750G>A
  hgvsp: ENSP00000363113.1:p.Gly584Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1774G>A
  hgvsp: ENSP00000363107.3:p.Gly592Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1774G>A
  hgvsp: ENSP00000282641.2:p.Gly592Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1750G>A
  hgvsp: ENSP00000363109.3:p.Gly584Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1609G>A
  hgvsp: ENSP00000378873.1:p.Gly537Ser
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3995
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24728
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16619
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 940
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3140
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 582
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3483
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Gly592Ser
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD

10-52566508-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566508
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566508
    reference: chr 10
allele count: 1
allele frequency: 8.2847295864263e-6
allele num: 120704
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+417T>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1742A>T
  hgvsp: ENSP00000363113.1:p.Asp581Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1601A>T
  hgvsp: ENSP00000378873.1:p.Asp534Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1766A>T
  hgvsp: ENSP00000363105.1:p.Asp589Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1766A>T
  hgvsp: ENSP00000282641.2:p.Asp589Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1745A>T
  hgvsp: ENSP00000378868.2:p.Asp582Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1766A>T
  hgvsp: ENSP00000363107.3:p.Asp589Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1742A>T
  hgvsp: ENSP00000363109.3:p.Asp581Val
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16780
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3141
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9465
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp589Val
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP

10-52566514-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566514
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566514
    reference: chr 10
allele count: 8
allele frequency: 6.616819956328988e-5
allele num: 120904
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1760G>A
  hgvsp: ENSP00000282641.2:p.Arg587Gln
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1760G>A
  hgvsp: ENSP00000363107.3:p.Arg587Gln
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1739G>A
  hgvsp: ENSP00000378868.2:p.Arg580Gln
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+423C>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1736G>A
  hgvsp: ENSP00000363109.3:p.Arg579Gln
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1595G>A
  hgvsp: ENSP00000378873.1:p.Arg532Gln
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1736G>A
  hgvsp: ENSP00000363113.1:p.Arg579Gln
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1760G>A
  hgvsp: ENSP00000363105.1:p.Arg587Gln
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg587Gln
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ

10-52566515-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566515
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566515
    reference: chr 10
allele count: 1
allele frequency: 8.268699664290793e-6
allele num: 120938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1738C>T
  hgvsp: ENSP00000378868.2:p.Arg580Ter
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1735C>T
  hgvsp: ENSP00000363109.3:p.Arg579Ter
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+424G>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1759C>T
  hgvsp: ENSP00000363105.1:p.Arg587Ter
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1735C>T
  hgvsp: ENSP00000363113.1:p.Arg579Ter
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1759C>T
  hgvsp: ENSP00000282641.2:p.Arg587Ter
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1759C>T
  hgvsp: ENSP00000363107.3:p.Arg587Ter
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1594C>T
  hgvsp: ENSP00000378873.1:p.Arg532Ter
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 16955
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24864
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4003
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1867
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg587Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: South Asian
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

10-52566520-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566520
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566520
    reference: chr 10
allele count: 1
allele frequency: 8.261868173631421e-6
allele num: 121038
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+429G>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1730C>G
  hgvsp: ENSP00000363113.1:p.Thr577Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1754C>G
  hgvsp: ENSP00000363107.3:p.Thr585Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1754C>G
  hgvsp: ENSP00000363105.1:p.Thr585Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1589C>G
  hgvsp: ENSP00000378873.1:p.Thr530Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1754C>G
  hgvsp: ENSP00000282641.2:p.Thr585Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1733C>G
  hgvsp: ENSP00000378868.2:p.Thr578Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1730C>G
  hgvsp: ENSP00000363109.3:p.Thr577Ser
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4383
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1626
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr585Ser
num of homozygotes: 0
population: European (Finnish)
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: DP

10-52566520-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566520
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566520
    reference: chr 10
allele count: 1
allele frequency: 8.261868173631421e-6
allele num: 121038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1754C>A
  hgvsp: ENSP00000363105.1:p.Thr585Asn
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1730C>A
  hgvsp: ENSP00000363113.1:p.Thr577Asn
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1733C>A
  hgvsp: ENSP00000378868.2:p.Thr578Asn
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+429G>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1730C>A
  hgvsp: ENSP00000363109.3:p.Thr577Asn
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1589C>A
  hgvsp: ENSP00000378873.1:p.Thr530Asn
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1754C>A
  hgvsp: ENSP00000282641.2:p.Thr585Asn
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1754C>A
  hgvsp: ENSP00000363107.3:p.Thr585Asn
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17012
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24875
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Thr585Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

10-52566522-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566522
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566522
    reference: chr 10
allele count: 2
allele frequency: 1.652073352056831e-5
allele num: 121060
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1728G>C
  hgvsp: ENST00000374001.2:c.1728G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1752G>C
  hgvsp: ENST00000282641.2:c.1752G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1728G>C
  hgvsp: ENST00000373997.3:c.1728G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1752G>C
  hgvsp: ENST00000373993.1:c.1752G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1752G>C
  hgvsp: ENST00000373995.3:c.1752G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+431C>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1731G>C
  hgvsp: ENST00000395489.2:c.1731G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1587G>C
  hgvsp: ENST00000395495.1:c.1587G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24863
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17031
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5243
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3142
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3500
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val584Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

10-52566523-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566523
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566523
    reference: chr 10
allele count: 1
allele frequency: 8.258183860205463e-6
allele num: 121092
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1751T>C
  hgvsp: ENSP00000363105.1:p.Val584Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1727T>C
  hgvsp: ENSP00000363113.1:p.Val576Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1751T>C
  hgvsp: ENSP00000282641.2:p.Val584Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+432A>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1586T>C
  hgvsp: ENSP00000378873.1:p.Val529Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1727T>C
  hgvsp: ENSP00000363109.3:p.Val576Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1730T>C
  hgvsp: ENSP00000378868.2:p.Val577Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1751T>C
  hgvsp: ENSP00000363107.3:p.Val584Ala
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17045
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4005
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9081
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31737
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Val584Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/10-52566545-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566545
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566545
    reference: chr 10
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1729G>T
  hgvsp: ENSP00000282641.2:p.Glu577Ter
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+454C>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1729G>T
  hgvsp: ENSP00000363107.3:p.Glu577Ter
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1705G>T
  hgvsp: ENSP00000363109.3:p.Glu569Ter
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1708G>T
  hgvsp: ENSP00000378868.2:p.Glu570Ter
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1729G>T
  hgvsp: ENSP00000363105.1:p.Glu577Ter
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1564G>T
  hgvsp: ENSP00000378873.1:p.Glu522Ter
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1705G>T
  hgvsp: ENSP00000363113.1:p.Glu569Ter
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Glu577Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

10-52566545-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566545
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566545
    reference: chr 10
allele count: 1
allele frequency: 8.251233559417133e-6
allele num: 121194
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1564G>A
  hgvsp: ENSP00000378873.1:p.Glu522Lys
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1708G>A
  hgvsp: ENSP00000378868.2:p.Glu570Lys
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+454C>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1729G>A
  hgvsp: ENSP00000363105.1:p.Glu577Lys
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1705G>A
  hgvsp: ENSP00000363109.3:p.Glu569Lys
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1729G>A
  hgvsp: ENSP00000282641.2:p.Glu577Lys
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1705G>A
  hgvsp: ENSP00000363113.1:p.Glu569Lys
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1729G>A
  hgvsp: ENSP00000363107.3:p.Glu577Lys
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 943
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 596
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4011
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4388
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3506
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3143
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu577Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

10-52566551-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566551
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566551
    reference: chr 10
allele count: 3
allele frequency: 2.475043313257982e-5
allele num: 121210
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1558A>G
  hgvsp: ENSP00000378873.1:p.Thr520Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1699A>G
  hgvsp: ENSP00000363109.3:p.Thr567Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1723A>G
  hgvsp: ENSP00000363105.1:p.Thr575Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1702A>G
  hgvsp: ENSP00000378868.2:p.Thr568Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1723A>G
  hgvsp: ENSP00000282641.2:p.Thr575Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1723A>G
  hgvsp: ENSP00000363107.3:p.Thr575Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+460T>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1699A>G
  hgvsp: ENSP00000363113.1:p.Thr567Ala
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4012
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr575Ala
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

10-52566562-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566562
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566562
    reference: chr 10
allele count: 1
allele frequency: 8.250961236984109e-6
allele num: 121198
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+471G>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1691C>T
  hgvsp: ENSP00000378868.2:p.Ala564Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1547C>T
  hgvsp: ENSP00000378873.1:p.Ala516Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1712C>T
  hgvsp: ENSP00000282641.2:p.Ala571Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1712C>T
  hgvsp: ENSP00000363107.3:p.Ala571Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1712C>T
  hgvsp: ENSP00000363105.1:p.Ala571Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1688C>T
  hgvsp: ENSP00000363109.3:p.Ala563Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1688C>T
  hgvsp: ENSP00000363113.1:p.Ala563Val
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17133
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4013
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24821
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5249
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3503
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala571Val
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD

10-52566565-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566565
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566565
    reference: chr 10
allele count: 2
allele frequency: 1.650028875505322e-5
allele num: 121210
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1709T>C
  hgvsp: ENSP00000363105.1:p.Leu570Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1688T>C
  hgvsp: ENSP00000378868.2:p.Leu563Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1709T>C
  hgvsp: ENSP00000363107.3:p.Leu570Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1685T>C
  hgvsp: ENSP00000363113.1:p.Leu562Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1544T>C
  hgvsp: ENSP00000378873.1:p.Leu515Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+474A>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1709T>C
  hgvsp: ENSP00000282641.2:p.Leu570Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1685T>C
  hgvsp: ENSP00000363109.3:p.Leu562Ser
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24822
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17137
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1630
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Leu570Ser
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff

10-52566570-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566570
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566570
    reference: chr 10
allele count: 1
allele frequency: 8.250144377526608e-6
allele num: 121210
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1704A>G
  hgvsp: ENST00000373995.3:c.1704A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+479T>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1680A>G
  hgvsp: ENST00000374001.2:c.1680A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1704A>G
  hgvsp: ENST00000282641.2:c.1704A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1704A>G
  hgvsp: ENST00000373993.1:c.1704A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1683A>G
  hgvsp: ENST00000395489.2:c.1683A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1680A>G
  hgvsp: ENST00000373997.3:c.1680A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1539A>G
  hgvsp: ENST00000395495.1:c.1539A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17135
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 462
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3501
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3148
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gln568Gln
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-52566573-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566573
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566573
    reference: chr 10
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1536A>G
  hgvsp: ENST00000395495.1:c.1536A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+482T>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1677A>G
  hgvsp: ENST00000374001.2:c.1677A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1680A>G
  hgvsp: ENST00000395489.2:c.1680A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1677A>G
  hgvsp: ENST00000373997.3:c.1677A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1701A>G
  hgvsp: ENST00000373993.1:c.1701A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1701A>G
  hgvsp: ENST00000282641.2:c.1701A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1701A>G
  hgvsp: ENST00000373995.3:c.1701A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24826
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1863
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3147
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly567Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

10-52566574-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566574
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566574
    reference: chr 10
allele count: 4
allele frequency: 3.3000033000033e-5
allele num: 121212
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1679G>A
  hgvsp: ENSP00000378868.2:p.Gly560Glu
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1676G>A
  hgvsp: ENSP00000363113.1:p.Gly559Glu
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1676G>A
  hgvsp: ENSP00000363109.3:p.Gly559Glu
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1700G>A
  hgvsp: ENSP00000363107.3:p.Gly567Glu
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1700G>A
  hgvsp: ENSP00000282641.2:p.Gly567Glu
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1700G>A
  hgvsp: ENSP00000363105.1:p.Gly567Glu
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+483C>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1535G>A
  hgvsp: ENSP00000378873.1:p.Gly512Glu
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4386
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1278
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gly567Glu
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff

10-52566576-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566576
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566576
    reference: chr 10
allele count: 1
allele frequency: 8.249327679794096e-6
allele num: 121222
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1698T>C
  hgvsp: ENST00000373993.1:c.1698T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1533T>C
  hgvsp: ENST00000395495.1:c.1533T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1677T>C
  hgvsp: ENST00000395489.2:c.1677T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1674T>C
  hgvsp: ENST00000373997.3:c.1674T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1674T>C
  hgvsp: ENST00000374001.2:c.1674T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+485A>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1698T>C
  hgvsp: ENST00000373995.3:c.1698T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1698T>C
  hgvsp: ENST00000282641.2:c.1698T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24815
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17142
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9101
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5255
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu566Leu
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD

10-52566585-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566585
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566585
    reference: chr 10
allele count: 4
allele frequency: 3.299785513941594e-5
allele num: 121220
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1665G>A
  hgvsp: ENST00000373997.3:c.1665G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1524G>A
  hgvsp: ENST00000395495.1:c.1524G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1665G>A
  hgvsp: ENST00000374001.2:c.1665G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1689G>A
  hgvsp: ENST00000282641.2:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+494C>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1689G>A
  hgvsp: ENST00000373993.1:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1668G>A
  hgvsp: ENST00000395489.2:c.1668G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1689G>A
  hgvsp: ENST00000373995.3:c.1689G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17155
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 950
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24801
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9099
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1866
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3144
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3499
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5261
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala563Ala
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-52566594-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566594
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566594
    reference: chr 10
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1680C>T
  hgvsp: ENST00000282641.2:c.1680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1515C>T
  hgvsp: ENST00000395495.1:c.1515C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+503G>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1680C>T
  hgvsp: ENST00000373995.3:c.1680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1659C>T
  hgvsp: ENST00000395489.2:c.1659C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1680C>T
  hgvsp: ENST00000373993.1:c.1680C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1656C>T
  hgvsp: ENST00000374001.2:c.1656C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1656C>T
  hgvsp: ENST00000373997.3:c.1656C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23527
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16015
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8610
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4013
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Leu560Leu
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

10-52566594-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566594
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566594
    reference: chr 10
allele count: 4043
allele frequency: 3.334763028093502e-2
allele num: 121238
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1656C>G
  hgvsp: ENST00000374001.2:c.1656C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1680C>G
  hgvsp: ENST00000373993.1:c.1680C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1680C>G
  hgvsp: ENST00000282641.2:c.1680C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1659C>G
  hgvsp: ENST00000395489.2:c.1659C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+503G>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1680C>G
  hgvsp: ENST00000373995.3:c.1680C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1515C>G
  hgvsp: ENST00000395495.1:c.1515C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1656C>G
  hgvsp: ENST00000373997.3:c.1656C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 951
  bin: 4.75e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 8462
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 7.25e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 7.75e1
  variant carriers: 285
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 9.25e1
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 16015
  bin: 2.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 23527
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 141
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 8.75e1
  variant carriers: 322
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 9.75e1
  variant carriers: 1627
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 5.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 3718
  bin: 3.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 8.25e1
  variant carriers: 315
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 6.75e1
  variant carriers: 175
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 5.25e1
  variant carriers: 85
genotype quality: GenotypeQuality
  all individuals: 30201
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2874
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Leu560Leu
num of homozygotes: 327
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

10-52566597-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566597
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566597
    reference: chr 10
allele count: 1
allele frequency: 8.247286642694553e-6
allele num: 121252
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1653G>C
  hgvsp: ENSP00000363113.1:p.Gln551His
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1677G>C
  hgvsp: ENSP00000363105.1:p.Gln559His
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1653G>C
  hgvsp: ENSP00000363109.3:p.Gln551His
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1677G>C
  hgvsp: ENSP00000282641.2:p.Gln559His
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1656G>C
  hgvsp: ENSP00000378868.2:p.Gln552His
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1512G>C
  hgvsp: ENSP00000378873.1:p.Gln504His
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1677G>C
  hgvsp: ENSP00000363107.3:p.Gln559His
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+506C>G
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2326
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16460
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9125
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4376
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23579
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6126
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 30883
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln559His
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-52566602-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566602
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566602
    reference: chr 10
allele count: 328
allele frequency: 2.705154639175258e-3
allele num: 121250
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1672G>T
  hgvsp: ENSP00000282641.2:p.Ala558Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1648G>T
  hgvsp: ENSP00000363109.3:p.Ala550Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1672G>T
  hgvsp: ENSP00000363105.1:p.Ala558Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1507G>T
  hgvsp: ENSP00000378873.1:p.Ala503Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1648G>T
  hgvsp: ENSP00000363113.1:p.Ala550Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1651G>T
  hgvsp: ENSP00000378868.2:p.Ala551Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1672G>T
  hgvsp: ENSP00000363107.3:p.Ala558Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+511C>A
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 9.75e1
  variant carriers: 159
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23439
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 5.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 16387
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 9090
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 6.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3471
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala558Ser
num of homozygotes: 10
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum

10-52566603-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566603
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566603
    reference: chr 10
allele count: 328
allele frequency: 2.705020782476743e-3
allele num: 121256
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+512T>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1671A>C
  hgvsp: ENST00000282641.2:c.1671A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1647A>C
  hgvsp: ENST00000373997.3:c.1647A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1671A>C
  hgvsp: ENST00000373993.1:c.1671A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1671A>C
  hgvsp: ENST00000373995.3:c.1671A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1647A>C
  hgvsp: ENST00000374001.2:c.1647A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1650A>C
  hgvsp: ENST00000395489.2:c.1650A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1506A>C
  hgvsp: ENST00000395495.1:c.1506A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9088
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4364
  bin: 3.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 6.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 9.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1356
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16391
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23437
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 6.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 5.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 5.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 7.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 9.75e1
  variant carriers: 158
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9260
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3183
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ala557Ala
num of homozygotes: 10
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: T
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

10-52566605-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566605
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566605
    reference: chr 10
allele count: 2
allele frequency: 1.649647800194658e-5
allele num: 121238
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1669G>A
  hgvsp: ENSP00000363107.3:p.Ala557Thr
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1648G>A
  hgvsp: ENSP00000378868.2:p.Ala550Thr
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1645G>A
  hgvsp: ENSP00000363109.3:p.Ala549Thr
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1504G>A
  hgvsp: ENSP00000378873.1:p.Ala502Thr
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1669G>A
  hgvsp: ENSP00000363105.1:p.Ala557Thr
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1645G>A
  hgvsp: ENSP00000363113.1:p.Ala549Thr
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1669G>A
  hgvsp: ENSP00000282641.2:p.Ala557Thr
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+514C>T
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9133
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30780
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1323
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3197
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1784
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala557Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-52566611-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566611
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566611
    reference: chr 10
allele count: 1305
allele frequency: 1.076608312571155e-2
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1642G>A
  hgvsp: ENSP00000378868.2:p.Val548Met
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1663G>A
  hgvsp: ENSP00000363105.1:p.Val555Met
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1663G>A
  hgvsp: ENSP00000282641.2:p.Val555Met
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1639G>A
  hgvsp: ENSP00000363109.3:p.Val547Met
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+520C>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1498G>A
  hgvsp: ENSP00000378873.1:p.Val500Met
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1663G>A
  hgvsp: ENSP00000363107.3:p.Val555Met
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1639G>A
  hgvsp: ENSP00000363113.1:p.Val547Met
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 5.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16126
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2314
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 6.25e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 8.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 5.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 22957
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 9.75e1
  variant carriers: 568
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 7.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 9.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 6.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8967
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 8.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 4.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9096
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7207
  bin: 9.75e1
  variant carriers: 1252
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Val555Met
num of homozygotes: 51
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

10-52566612-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566612
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566612
    reference: chr 10
allele count: 4
allele frequency: 3.299948850792813e-5
allele num: 121214
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1497C>T
  hgvsp: ENST00000395495.1:c.1497C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1662C>T
  hgvsp: ENST00000373995.3:c.1662C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1641C>T
  hgvsp: ENST00000395489.2:c.1641C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1638C>T
  hgvsp: ENST00000373997.3:c.1638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1662C>T
  hgvsp: ENST00000282641.2:c.1662C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1638C>T
  hgvsp: ENST00000374001.2:c.1638C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1662C>T
  hgvsp: ENST00000373993.1:c.1662C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+521G>A
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2429
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16326
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22966
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30493
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4403
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro554Pro
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/10-52566617-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566617
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566617
    reference: chr 10
allele count: 2
allele frequency: 1.650464605786529e-5
allele num: 121178
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1657G>T
  hgvsp: ENSP00000282641.2:p.Ala553Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1633G>T
  hgvsp: ENSP00000363109.3:p.Ala545Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1492G>T
  hgvsp: ENSP00000378873.1:p.Ala498Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1636G>T
  hgvsp: ENSP00000378868.2:p.Ala546Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1633G>T
  hgvsp: ENSP00000363113.1:p.Ala545Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1657G>T
  hgvsp: ENSP00000363105.1:p.Ala553Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1657G>T
  hgvsp: ENSP00000363107.3:p.Ala553Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+526C>A
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16317
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9196
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22948
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3486
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3217
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ala553Ser
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ

10-52566624-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566624
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566624
    reference: chr 10
allele count: 1
allele frequency: 8.256138438929344e-6
allele num: 121122
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1650T>C
  hgvsp: ENST00000373993.1:c.1650T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1629T>C
  hgvsp: ENST00000395489.2:c.1629T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1626T>C
  hgvsp: ENST00000374001.2:c.1626T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+533A>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1485T>C
  hgvsp: ENST00000395495.1:c.1485T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1650T>C
  hgvsp: ENST00000282641.2:c.1650T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1626T>C
  hgvsp: ENST00000373997.3:c.1626T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1650T>C
  hgvsp: ENST00000373995.3:c.1650T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22868
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16306
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30382
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asn550Asn
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP

10-52566629-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566629
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566629
    reference: chr 10
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1645C>T
  hgvsp: ENSP00000363105.1:p.Pro549Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1621C>T
  hgvsp: ENSP00000363113.1:p.Pro541Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1621C>T
  hgvsp: ENSP00000363109.3:p.Pro541Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1624C>T
  hgvsp: ENSP00000378868.2:p.Pro542Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1480C>T
  hgvsp: ENSP00000378873.1:p.Pro494Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1645C>T
  hgvsp: ENSP00000282641.2:p.Pro549Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1645C>T
  hgvsp: ENSP00000363107.3:p.Pro549Ser
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+538G>A
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3220
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30211
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro549Ser
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

10-52566629-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566629
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566629
    reference: chr 10
allele count: 2
allele frequency: 1.652100645971353e-5
allele num: 121058
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1621C>G
  hgvsp: ENSP00000363113.1:p.Pro541Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1624C>G
  hgvsp: ENSP00000378868.2:p.Pro542Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1645C>G
  hgvsp: ENSP00000363107.3:p.Pro549Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1645C>G
  hgvsp: ENSP00000282641.2:p.Pro549Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+538G>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1480C>G
  hgvsp: ENSP00000378873.1:p.Pro494Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1645C>G
  hgvsp: ENSP00000363105.1:p.Pro549Ala
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1621C>G
  hgvsp: ENSP00000363109.3:p.Pro541Ala
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22748
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16277
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2426
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9231
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro549Ala
num of homozygotes: 0
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

10-52566633-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566633
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566633
    reference: chr 10
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1641T>C
  hgvsp: ENST00000373993.1:c.1641T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1641T>C
  hgvsp: ENST00000282641.2:c.1641T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1620T>C
  hgvsp: ENST00000395489.2:c.1620T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1476T>C
  hgvsp: ENST00000395495.1:c.1476T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1641T>C
  hgvsp: ENST00000373995.3:c.1641T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1617T>C
  hgvsp: ENST00000373997.3:c.1617T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1617T>C
  hgvsp: ENST00000374001.2:c.1617T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+542A>G
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16237
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4483
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22665
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9181
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9217
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ala547Ala
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: MQ

10-52566634-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566634
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566634
    reference: chr 10
allele count: 3
allele frequency: 2.480117722921248e-5
allele num: 120962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1640C>T
  hgvsp: ENSP00000282641.2:p.Ala547Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1640C>T
  hgvsp: ENSP00000363107.3:p.Ala547Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1616C>T
  hgvsp: ENSP00000363113.1:p.Ala539Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1616C>T
  hgvsp: ENSP00000363109.3:p.Ala539Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1619C>T
  hgvsp: ENSP00000378868.2:p.Ala540Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+543G>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1640C>T
  hgvsp: ENSP00000363105.1:p.Ala547Val
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1475C>T
  hgvsp: ENSP00000378873.1:p.Ala492Val
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16211
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3474
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Ala547Val
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
reference allele: G
site quality: MQ
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum

10-52566639-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566639
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566639
    reference: chr 10
allele count: 1
allele frequency: 8.271982794275789e-6
allele num: 120890
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1614A>C
  hgvsp: ENST00000395489.2:c.1614A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1635A>C
  hgvsp: ENST00000373993.1:c.1635A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1611A>C
  hgvsp: ENST00000373997.3:c.1611A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1470A>C
  hgvsp: ENST00000395495.1:c.1470A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1635A>C
  hgvsp: ENST00000373995.3:c.1635A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1635A>C
  hgvsp: ENST00000282641.2:c.1635A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+548T>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1611A>C
  hgvsp: ENST00000374001.2:c.1611A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9162
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16189
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4487
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 659
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1319
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
hgvs: c.1635A>C
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP

10-52566648-AAGAGGCAG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566648
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566640
    reference: chr 10
allele count: 21
allele frequency: 1.739995028585633e-4
allele num: 120690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1613-16_1613-9delCTGCCTCT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1634-16_1634-9delCTGCCTCT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1610-16_1610-9delCTGCCTCT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1469-16_1469-9delCTGCCTCT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1610-16_1610-9delCTGCCTCT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1634-16_1634-9delCTGCCTCT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1634-16_1634-9delCTGCCTCT
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4485
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21973
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16046
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9130
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3457
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9107
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29214
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: AAGAGGCAG
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD

10-52566650-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566650
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566650
    reference: chr 10
allele count: 2
allele frequency: 1.657824933687002e-5
allele num: 120640
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1634-10C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+559G>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1469-10C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1634-10C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1613-10C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1610-10C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1610-10C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1634-10C>T
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2425
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4484
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 984
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21888
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15993
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 923
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3211
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6405
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP

10-52566651-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566651
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566651
    reference: chr 10
allele count: 1
allele frequency: 8.292011476143882e-6
allele num: 120598
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1634-11T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1634-11T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1469-11T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+560A>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1610-11T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1613-11T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1634-11T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1610-11T>A
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21796
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 910
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4392
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6401
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

10-52566664-TTGA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566664
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566661
    reference: chr 10
allele count: 5
allele frequency: 4.154411153763065e-5
allele num: 120354
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1610-27_1610-25delTCA
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1469-27_1469-25delTCA
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1634-27_1634-25delTCA
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1613-27_1613-25delTCA
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1610-27_1610-25delTCA
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+577_516+579delTGA
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1634-27_1634-25delTCA
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1634-27_1634-25delTCA
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20790
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 354
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1047
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9049
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4479
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 355
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 15574
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8914
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: TTGA
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

10-52566667-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566667
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566667
    reference: chr 10
allele count: 1
allele frequency: 8.316146630297385e-6
allele num: 120248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1610-27T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1469-27T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1634-27T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+576A>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1613-27T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1634-27T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1634-27T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1610-27T>A
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 914
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15428
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9025
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1318
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2000
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6408
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8899
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 633
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4379
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1322
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/10-52566675-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566675
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566675
    reference: chr 10
allele count: 1
allele frequency: 8.327920185212944e-6
allele num: 120078
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1469-35T>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1610-35T>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1634-35T>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1634-35T>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+584A>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1610-35T>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1613-35T>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1634-35T>G
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19860
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15140
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 509
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8982
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1478
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26157
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1720
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3191
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD

10-52566679-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566679
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566679
    reference: chr 10
allele count: 1
allele frequency: 8.347384764353328e-6
allele num: 119798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1634-39G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1610-39G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1634-39G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1613-39G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+588C>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1610-39G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1469-39G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1634-39G>A
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 915
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4478
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2433
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8981
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2174
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1476
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14848
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3394
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 183
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1258
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25101
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD

10-52566692-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52566692
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52566692
    reference: chr 10
allele count: 1
allele frequency: 8.412976174451474e-6
allele num: 118864
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1634-52A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1613-52A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1634-52A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+601T>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1610-52A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1469-52A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1634-52A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1610-52A>G
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 921
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9462
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15314
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17938
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2182
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2479
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1555
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4263
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1624
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1400
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2489
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3174
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: QD

10-52569603-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569603
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569603
    reference: chr 10
allele count: 2
allele frequency: 1.662013030182157e-5
allele num: 120336
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+51A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3512T>C
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+51A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+51A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+51A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+51A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+51A>G
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+51A>G
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5212
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1939
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1437
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2246
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: T
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-52569606-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569606
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569606
    reference: chr 10
allele count: 4
allele frequency: 3.324689141565264e-5
allele num: 120312
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3515C>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+48G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+48G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+48G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+48G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+48G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+48G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+48G>A
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5503
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2050
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1522
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16172
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3349
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1514
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 661
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6455
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/10-52569608-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569608
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569607
    reference: chr 10
allele count: 1
allele frequency: 8.310065150910783e-6
allele num: 120336
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+45delT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3520delA
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+45delT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+45delT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+45delT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+45delT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+45delT
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+45delT
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5828
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1668
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1384
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1395
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16252
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 507
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1854
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 381
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21873
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21095
  bin: 9.75e1
  variant carriers: 1
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: CA
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum

10-52569609-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569609
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569609
    reference: chr 10
allele count: 9
allele frequency: 7.474710562596549e-5
allele num: 120406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3518A>G
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+45T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+45T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+45T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+45T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+45T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+45T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+45T>C
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6096
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1573
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1344
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1943
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10120
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1520
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3350
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5078
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1557
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16330
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21097
  bin: 9.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 683
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 953
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1873
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6569
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

10-52569614-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569614
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569614
    reference: chr 10
allele count: 1
allele frequency: 8.301097405076952e-6
allele num: 120466
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+40G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+40G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+40G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+40G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3523C>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+40G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+40G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+40G>A
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3356
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16567
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 684
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP

10-52569616-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569616
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569616
    reference: chr 10
allele count: 2
allele frequency: 1.659888787451241e-5
allele num: 120490
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3525C>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+38G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+38G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+38G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+38G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+38G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+38G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+38G>A
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1942
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5077
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16637
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1546
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 966
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 266
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6719
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

10-52569626-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569626
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569626
    reference: chr 10
allele count: 6
allele frequency: 4.967380865648906e-5
allele num: 120788
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+28G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3535C>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+28G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+28G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+28G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+28G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+28G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+28G>A
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3368
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7441
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17016
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10366
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1545
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1987
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23948
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2390
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

10-52569627-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569627
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569627
    reference: chr 10
allele count: 1
allele frequency: 8.274720728175424e-6
allele num: 120850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+27C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+27C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+27C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+27C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3536G>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+27C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+27C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+27C>T
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7464
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 371
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10385
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17067
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1404
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP

10-52569629-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569629
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569629
    reference: chr 10
allele count: 2
allele frequency: 1.653630545863443e-5
allele num: 120946
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+25G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+25G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3538C>T
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+25G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+25G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+25G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+25G>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+25G>A
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1511
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3364
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1950
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1381
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1379
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1555
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10411
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7540
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5076
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/10-52569634-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569634
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569634
    reference: chr 10
allele count: 14
allele frequency: 1.156795346377578e-4
allele num: 121024
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+20G>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+20G>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+20G>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+20G>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+20G>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+20G>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+20G>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3543C>A
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7622
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1513
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1310
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1427
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5074
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3367
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10437
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1515
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1542
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1574
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1582
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24291
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6901
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

10-52569635-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569635
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569635
    reference: chr 10
allele count: 2
allele frequency: 1.652264428399121e-5
allele num: 121046
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+19A>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+19A>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+19A>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+19A>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+19A>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+19A>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3544T>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+19A>T
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5072
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3366
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1510
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17154
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1309
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1543
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1575
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10450
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1554
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1380
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24291
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6909
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

10-52569637-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569637
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569637
    reference: chr 10
allele count: 23782
allele frequency: 1.964512878124535e-1
allele num: 121058
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+17C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+17C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+17C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+17C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3546G>A
  variant of: http://identifiers.org/hgnc/23456
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+17C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+17C>T
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+17C>T
  variant of: http://identifiers.org/hgnc/24086
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.5e0
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1566
  bin: 8.75e1
  variant carriers: 1497
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 1530
  bin: 5.25e1
  variant carriers: 1077
genotype depth: GenotypeDepth
  all individuals: 16684
  bin: 2.75e1
  variant carriers: 330
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.75e1
  variant carriers: 970
genotype depth: GenotypeDepth
  all individuals: 10443
  bin: 3.25e1
  variant carriers: 515
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3597
  bin: 3.75e1
  variant carriers: 648
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 9.25e1
  variant carriers: 1277
genotype depth: GenotypeDepth
  all individuals: 5381
  bin: 9.75e1
  variant carriers: 5177
genotype depth: GenotypeDepth
  all individuals: 6248
  bin: 2.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 5.75e1
  variant carriers: 1208
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 4.25e1
  variant carriers: 785
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 6.75e1
  variant carriers: 1485
genotype depth: GenotypeDepth
  all individuals: 1484
  bin: 6.25e1
  variant carriers: 1274
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 7.25e1
  variant carriers: 1512
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 8.25e1
  variant carriers: 1464
genotype depth: GenotypeDepth
  all individuals: 1694
  bin: 7.75e1
  variant carriers: 1567
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 5.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 6394
  bin: 6.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 2.75e1
  variant carriers: 2
num of homozygotes: 2696
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

10-52569650-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569650
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569650
    reference: chr 10
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+4T>C
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3559A>G
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 25137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 7.25e1
  variant carriers: 0
hgvs: c.1633+4T>C
num of homozygotes: 0
population: African
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum

10-52569650-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 52569650
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 52569650
    reference: chr 10
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378873
  ensembl transcript: ENST00000395495
  gene symbol: A1CF
  hgvsc: ENST00000395495.1:c.1468+4T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363109
  ensembl transcript: ENST00000373997
  gene symbol: A1CF
  hgvsc: ENST00000373997.3:c.1609+4T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363105
  ensembl transcript: ENST00000373993
  gene symbol: A1CF
  hgvsc: ENST00000373993.1:c.1633+4T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363107
  ensembl transcript: ENST00000373995
  gene symbol: A1CF
  hgvsc: ENST00000373995.3:c.1633+4T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000363113
  ensembl transcript: ENST00000374001
  gene symbol: A1CF
  hgvsc: ENST00000374001.2:c.1609+4T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000282641
  ensembl transcript: ENST00000282641
  gene symbol: A1CF
  hgvsc: ENST00000282641.2:c.1633+4T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000148584
  ensembl protein: ENSP00000378868
  ensembl transcript: ENST00000395489
  gene symbol: A1CF
  hgvsc: ENST00000395489.2:c.1612+4T>A
  variant of: http://identifiers.org/hgnc/24086
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204147
  ensembl transcript: ENST00000483649
  gene symbol: ASAH2B
  hgvsc: ENST00000483649.1:n.516+3559A>T
  variant of: http://identifiers.org/hgnc/23456
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7834
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15482
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 863
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25137
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1335
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9668
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1127
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2668
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 2.25e1
  variant carriers: 0
hgvs: c.1633+4T>A
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD

GenotypeQuality
all individuals: 45
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 83
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.075268817204301e-3
allele num: 930
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.954e1

FS
type: SiteQuality
SIO_000300: 1.0736e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

VQSLOD
type: SiteQuality
SIO_000300: -4.327e0

DP
type: SiteQuality
SIO_000300: 4.5329e4

MQRankSum
type: SiteQuality
SIO_000300: 1.36e0

QD
type: SiteQuality
SIO_000300: 1.208e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.573e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.829999999999999e-2

GenotypeQuality
all individuals: 1
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
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GenotypeQuality
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South Asian
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East Asian
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African
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Other
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European (Non-Finnish)
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European (Finnish)
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Latino
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FS
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InbreedingCoeff
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MQ
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DP
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VQSLOD
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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East Asian
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African
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allele frequency: 1.0e-1
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European (Non-Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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VQSLOD
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MQ
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DP
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MQRankSum
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FS
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InbreedingCoeff
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BaseQRankSum
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QD
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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East Asian
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European (Non-Finnish)
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allele frequency: 7.5e-1
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South Asian
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num of homozygotes: 0

Latino
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African
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European (Finnish)
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BaseQRankSum
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InbreedingCoeff
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FS
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MQRankSum
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QD
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 0
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African
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allele frequency: NaN
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Latino
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Other
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South Asian
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European (Finnish)
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European (Non-Finnish)
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MQRankSum
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BaseQRankSum
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FS
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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DP
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InbreedingCoeff
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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East Asian
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European (Finnish)
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num of homozygotes: 0

Latino
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European (Non-Finnish)
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African
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Other
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DP
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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FS
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MQ
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QD
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ClippingRankSum
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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African
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Latino
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South Asian
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Other
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InbreedingCoeff
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ReadPosRankSum
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FS
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ClippingRankSum
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VQSLOD
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QD
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DP
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MQRankSum
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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allele frequency: 2.5e-1
allele num: 4
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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ReadPosRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQ
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BaseQRankSum
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FS
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

Latino
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European (Finnish)
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European (Non-Finnish)
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African
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South Asian
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East Asian
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MQ
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InbreedingCoeff
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MQRankSum
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VQSLOD
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ReadPosRankSum
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FS
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QD
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DP
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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Other
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South Asian
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European (Finnish)
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Latino
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allele num: 11084
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African
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ClippingRankSum
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MQ
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BaseQRankSum
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VQSLOD
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MQRankSum
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QD
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DP
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ReadPosRankSum
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FS
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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European (Finnish)
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African
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Other
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European (Non-Finnish)
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InbreedingCoeff
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MQRankSum
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VQSLOD
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QD
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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MQ
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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Other
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South Asian
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European (Non-Finnish)
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ClippingRankSum
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InbreedingCoeff
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FS
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MQ
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MQRankSum
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BaseQRankSum
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VQSLOD
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.25281884239539e-4
allele num: 7982
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11212
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62776
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9340
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.6e-1

MQRankSum
type: SiteQuality
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QD
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BaseQRankSum
type: SiteQuality
SIO_000300: -7.7e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.7e-3

FS
type: SiteQuality
SIO_000300: 8.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 2.23e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.4e-1

DP
type: SiteQuality
SIO_000300: 1.601396e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.224889759921607e-4
allele num: 8164
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6494
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 12418
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 63726
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9618
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11266
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
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ReadPosRankSum
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DP
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FS
type: SiteQuality
SIO_000300: 4.593e0

MQ
type: SiteQuality
SIO_000300: 5.994e1

MQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.73e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e-1

GenotypeQuality
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variant carriers: 6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6542
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8484
num of homozygotes: 0

Latino
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allele count: 6
allele frequency: 5.245672320335723e-4
allele num: 11438
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65580
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.156e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.96e-1

DP
type: SiteQuality
SIO_000300: 1.705806e6

FS
type: SiteQuality
SIO_000300: 3.862e0

VQSLOD
type: SiteQuality
SIO_000300: 1.11e0

QD
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SIO_000300: 1.22e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10278
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.520820026158104e-5
allele num: 65754
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.13e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.03e0

VQSLOD
type: SiteQuality
SIO_000300: -1.635e0

MQ
type: SiteQuality
SIO_000300: 5.918e1

QD
type: SiteQuality
SIO_000300: 1.13e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.5e-1

DP
type: SiteQuality
SIO_000300: 1.712084e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10380
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66366
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.503035964502569e-4
allele num: 8564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11502
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15946
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 5.214e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.68e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-2

DP
type: SiteQuality
SIO_000300: 1.740299e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

QD
type: SiteQuality
SIO_000300: 1.197e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8572
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.626492106276473e-5
allele num: 10388
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66478
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6584
num of homozygotes: 0

South Asian
type: Population
allele count: 0
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allele num: 16272
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BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

MQ
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.44e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.28e-2

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.745991e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 3
allele frequency: 2.885725278953444e-4
allele num: 10396
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.006162633398467e-5
allele num: 66530
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 2.217294900221729e-3
allele num: 902
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South Asian
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allele frequency: 6.09979260705136e-5
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.47e-1

ReadPosRankSum
type: SiteQuality
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DP
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BaseQRankSum
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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FS
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66548
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Other
type: Population
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Latino
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African
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South Asian
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
type: SiteQuality
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DP
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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VQSLOD
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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East Asian
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

Other
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Latino
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South Asian
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FS
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InbreedingCoeff
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VQSLOD
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MQ
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ClippingRankSum
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ReadPosRankSum
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QD
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66588
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.076810889645114e-5
allele num: 16456
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.054e0

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.894e0

ReadPosRankSum
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DP
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MQ
type: SiteQuality
SIO_000300: 5.952e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.26e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66600
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.49e0

MQRankSum
type: SiteQuality
SIO_000300: -2.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.72e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 6.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.28e-1

ReadPosRankSum
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SIO_000300: 1.9e0

DP
type: SiteQuality
SIO_000300: 1.751982e6

QD
type: SiteQuality
SIO_000300: 1.366e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.501366243281386e-5
allele num: 66606
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16480
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.932e1

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.44e-1

FS
type: SiteQuality
SIO_000300: 3.152e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.699e0

VQSLOD
type: SiteQuality
SIO_000300: -7.417e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.84e-1

QD
type: SiteQuality
SIO_000300: 9.84e0

DP
type: SiteQuality
SIO_000300: 1.752047e6

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500195025353296e-5
allele num: 66658
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.73e-1

FS
type: SiteQuality
SIO_000300: 5.289e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.317e0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 1.167e1

DP
type: SiteQuality
SIO_000300: 1.753687e6

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

MQ
type: SiteQuality
SIO_000300: 5.99e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66658
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.73e0

DP
type: SiteQuality
SIO_000300: 1.753687e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.317e0

FS
type: SiteQuality
SIO_000300: 5.289e0

MQ
type: SiteQuality
SIO_000300: 5.99e1

MQRankSum
type: SiteQuality
SIO_000300: 3.53e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.46e-1

QD
type: SiteQuality
SIO_000300: 1.167e1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.73e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
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allele frequency: 2.60235947258848e-4
allele num: 11528
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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QD
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MQ
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500060002400096e-5
allele num: 66664
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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East Asian
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
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MQRankSum
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DP
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QD
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BaseQRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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South Asian
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allele frequency: 1.211680600993578e-4
allele num: 16506
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European (Finnish)
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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ClippingRankSum
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FS
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QD
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DP
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BaseQRankSum
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MQ
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VQSLOD
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InbreedingCoeff
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

Other
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South Asian
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num of homozygotes: 0

East Asian
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

African
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DP
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 6.648e0

MQRankSum
type: SiteQuality
SIO_000300: 1.32e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.77e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.935e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 14
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1630
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4387
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3504
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5250
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31799
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1278
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9511
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8610
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.44e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.49e-1

FS
type: SiteQuality
SIO_000300: 3.119e0

QD
type: SiteQuality
SIO_000300: 1.252e1

DP
type: SiteQuality
SIO_000300: 1.754271e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.22e0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 5.938e1

GenotypeQuality
all individuals: 3146
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31779
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.25e1
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GenotypeQuality
all individuals: 5254
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9512
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3503
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.644681839294008e-4
allele num: 8612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66668
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.25e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.31e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.56e-1

FS
type: SiteQuality
SIO_000300: 2.475e0

QD
type: SiteQuality
SIO_000300: 1.067e1

DP
type: SiteQuality
SIO_000300: 1.754611e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.276e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3501
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31799
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9513
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.613535858488752e-5
allele num: 10402
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 3.654e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.900000000000001e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 4.61e-1

DP
type: SiteQuality
SIO_000300: 1.754697e6

MQRankSum
type: SiteQuality
SIO_000300: -8.799999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.71e-1

QD
type: SiteQuality
SIO_000300: 1.317e1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4385
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9519
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31780
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1280
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1628
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.515151515151515e-4
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.677542519958348e-5
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.000210014701029e-5
allele num: 66662
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.12e0

QD
type: SiteQuality
SIO_000300: 1.353e1

MQRankSum
type: SiteQuality
SIO_000300: -8.39e-1

FS
type: SiteQuality
SIO_000300: 5.02e0

DP
type: SiteQuality
SIO_000300: 1.755263e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.5e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.39e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.88e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8863
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30201
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variant carriers: 0

GenotypeQuality
all individuals: 2874
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1503
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3252
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8618
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 2.999760019198464e-5
allele num: 66672
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.184e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.69e0

DP
type: SiteQuality
SIO_000300: 1.992715e6

MQ
type: SiteQuality
SIO_000300: 5.961e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

QD
type: SiteQuality
SIO_000300: 1.609e1

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1180
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8863
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4013
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8610
bin: 9.75e1
variant carriers: 3703

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 4

GenotypeQuality
all individuals: 17
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3252
bin: 7.25e1
variant carriers: 6

East Asian
type: Population
allele count: 955
allele frequency: 1.108145741471339e-1
allele num: 8618
num of homozygotes: 72

European (Finnish)
type: Population
allele count: 175
allele frequency: 2.649909145972138e-2
allele num: 6604
num of homozygotes: 4

Other
type: Population
allele count: 18
allele frequency: 1.986754966887417e-2
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 82
allele frequency: 7.883099403960777e-3
allele num: 10402
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 498
allele frequency: 7.469402447804176e-3
allele num: 66672
num of homozygotes: 1

Latino
type: Population
allele count: 2247
allele frequency: 1.948829141370338e-1
allele num: 11530
num of homozygotes: 247

South Asian
type: Population
allele count: 68
allele frequency: 4.119714043378166e-3
allele num: 16506
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 1.992715e6

VQSLOD
type: SiteQuality
SIO_000300: 5.69e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.99e-1

FS
type: SiteQuality
SIO_000300: 5.24e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.72e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.184e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

QD
type: SiteQuality
SIO_000300: 1.609e1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3492
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9301
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
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GenotypeQuality
all individuals: 1776
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3206
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4399
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.670019074041963e-5
allele num: 11534
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.991e0

VQSLOD
type: SiteQuality
SIO_000300: -3.422e-1

QD
type: SiteQuality
SIO_000300: 1.203e1

MQ
type: SiteQuality
SIO_000300: 5.904e1

FS
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.354e0

MQRankSum
type: SiteQuality
SIO_000300: 1.47e0

DP
type: SiteQuality
SIO_000300: 1.805518e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

GenotypeQuality
all individuals: 13
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9257
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4371
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30735
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6395
bin: 9.75e1
variant carriers: 317

GenotypeQuality
all individuals: 3182
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.75e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 309
allele frequency: 2.970011534025375e-2
allele num: 10404
num of homozygotes: 10

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Latino
type: Population
allele count: 16
allele frequency: 1.387203051846714e-3
allele num: 11534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499880009599232e-5
allele num: 66672
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.08e0

FS
type: SiteQuality
SIO_000300: 5.33e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.81e-2

MQ
type: SiteQuality
SIO_000300: 5.959e1

MQRankSum
type: SiteQuality
SIO_000300: 2.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.2e-1

DP
type: SiteQuality
SIO_000300: 1.8285e6

QD
type: SiteQuality
SIO_000300: 1.913e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.358e0

GenotypeQuality
all individuals: 16
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4374
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6395
bin: 9.75e1
variant carriers: 317

GenotypeQuality
all individuals: 5
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30737
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 10
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1769
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499745043342632e-5
allele num: 66678
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 309
allele frequency: 2.970011534025375e-2
allele num: 10404
num of homozygotes: 10

Latino
type: Population
allele count: 16
allele frequency: 1.387203051846714e-3
allele num: 11534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.85e-2

FS
type: SiteQuality
SIO_000300: 5.36e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.96e0

QD
type: SiteQuality
SIO_000300: 1.915e1

DP
type: SiteQuality
SIO_000300: 1.82848e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.58e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.879999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.958e1

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 16
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4403
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66666
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.92270717169775e-4
allele num: 10402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.65e0

VQSLOD
type: SiteQuality
SIO_000300: -6.777e-1

QD
type: SiteQuality
SIO_000300: 8.49e0

DP
type: SiteQuality
SIO_000300: 1.811682e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 6.846e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.072e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.0e-1

GenotypeQuality
all individuals: 5
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 3130
bin: 8.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 30
allele frequency: 4.500855162480871e-4
allele num: 66654
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Latino
type: Population
allele count: 261
allele frequency: 2.262874978324952e-2
allele num: 11534
num of homozygotes: 2

African
type: Population
allele count: 1006
allele frequency: 9.673076923076923e-2
allele num: 10400
num of homozygotes: 48

South Asian
type: Population
allele count: 2
allele frequency: 1.212709192335678e-4
allele num: 16492
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159554730983302e-4
allele num: 8624
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.518763796909493e-3
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.890379e6

VQSLOD
type: SiteQuality
SIO_000300: 4.93e0

MQRankSum
type: SiteQuality
SIO_000300: 1.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.46e0

FS
type: SiteQuality
SIO_000300: 1.144e0

MQ
type: SiteQuality
SIO_000300: 5.963e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.909999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.45e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

GenotypeQuality
all individuals: 1322
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
all individuals: 13
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GenotypeQuality
all individuals: 2
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GenotypeQuality
all individuals: 132
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 9255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3218
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16488
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500990217847926e-5
allele num: 66652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.77e0

MQRankSum
type: SiteQuality
SIO_000300: -2.01e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.159999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

FS
type: SiteQuality
SIO_000300: 1.771e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.93e-1

QD
type: SiteQuality
SIO_000300: 1.258e1

DP
type: SiteQuality
SIO_000300: 1.822802e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1320
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variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 23
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 6
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 24
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.214181641573579e-4
allele num: 16472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.822042e6

FS
type: SiteQuality
SIO_000300: 5.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.49e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.111e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e0

QD
type: SiteQuality
SIO_000300: 7.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.01e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

GenotypeQuality
all individuals: 6409
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3480
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variant carriers: 0

GenotypeQuality
all individuals: 50
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variant carriers: 0

GenotypeQuality
all individuals: 18
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variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
all individuals: 6
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1808
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.080505898090721e-5
allele num: 16446
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.466e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.49e0

FS
type: SiteQuality
SIO_000300: 1.477e0

VQSLOD
type: SiteQuality
SIO_000300: 3.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 1.820608e6

GenotypeQuality
all individuals: 4399
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.64e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 9.399999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.353e0

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

QD
type: SiteQuality
SIO_000300: 8.6e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

DP
type: SiteQuality
SIO_000300: 1.819062e6

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6410
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 3220
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.22040517451794e-4
allele num: 16388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 8.6e0

FS
type: SiteQuality
SIO_000300: 9.399999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.819062e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.13e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.13e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.353e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.1e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.64e-1

MQ
type: SiteQuality
SIO_000300: 5.915e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
all individuals: 373
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GenotypeQuality
all individuals: 3476
bin: 7.25e1
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GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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GenotypeQuality
all individuals: 45
bin: 3.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 30113
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501907422426482e-5
allele num: 66582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16352
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: 4.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.15e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.26e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.123e-1

DP
type: SiteQuality
SIO_000300: 1.817457e6

FS
type: SiteQuality
SIO_000300: 1.033e1

QD
type: SiteQuality
SIO_000300: 1.089e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.835985312117503e-4
allele num: 16340
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66570
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8624
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
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DP
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
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SIO_000300: -4.052e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

VQSLOD
type: SiteQuality
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ClippingRankSum
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QD
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.13421666053245e-5
allele num: 16302
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 6.01e-1

FS
type: SiteQuality
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MQ
type: SiteQuality
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ReadPosRankSum
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BaseQRankSum
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ClippingRankSum
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 21

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16186
num of homozygotes: 0

European (Finnish)
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allele frequency: 3.028467595396729e-4
allele num: 6604
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.683570684265369e-5
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
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allele count: 18
allele frequency: 2.708314525593572e-4
allele num: 66462
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8622
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Other
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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ClippingRankSum
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DP
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QD
type: SiteQuality
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.010144185906505e-5
allele num: 66442
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 2.27e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.05e0

FS
type: SiteQuality
SIO_000300: 1.3987e1

DP
type: SiteQuality
SIO_000300: 1.805097e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.505434618974498e-5
allele num: 66426
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
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VQSLOD
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FS
type: SiteQuality
SIO_000300: 1.8432e1

DP
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.933e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.87e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11498
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.534205292025798e-5
allele num: 66364
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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MQRankSum
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QD
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ReadPosRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.69414014953921e-5
allele num: 11502
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Other
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East Asian
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66340
num of homozygotes: 0

MQ
type: SiteQuality
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FS
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66300
num of homozygotes: 0

Latino
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Other
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East Asian
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allele frequency: 0.0e0
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African
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South Asian
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allele num: 15812
num of homozygotes: 0

European (Finnish)
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allele count: 0
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ReadPosRankSum
type: SiteQuality
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VQSLOD
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DP
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FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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ClippingRankSum
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MQ
type: SiteQuality
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

Other
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South Asian
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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Latino
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num of homozygotes: 0

DP
type: SiteQuality
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MQRankSum
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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VQSLOD
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MQ
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BaseQRankSum
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FS
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1807
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 512
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6419
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2012
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19239
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7761
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3240
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10366
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.738203425375742e-5
allele num: 11444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 880
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65960
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15098
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.91e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.28e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.31e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.163e-1

MQ
type: SiteQuality
SIO_000300: 5.939e1

DP
type: SiteQuality
SIO_000300: 1.780721e6

QD
type: SiteQuality
SIO_000300: 1.689e1

GenotypeQuality
all individuals: 1465
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 574
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 468
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 910
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20953
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6423
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1838
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21105
bin: 9.75e1
variant carriers: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16094
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.939111886755866e-4
allele num: 10314
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8552
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

MQRankSum
type: SiteQuality
SIO_000300: 2.97e-1

FS
type: SiteQuality
SIO_000300: 1.021e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

DP
type: SiteQuality
SIO_000300: 2.754789e6

VQSLOD
type: SiteQuality
SIO_000300: 3.93e0

QD
type: SiteQuality
SIO_000300: 1.521e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.01e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-1

GenotypeQuality
all individuals: 2249
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21480
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 385
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 841
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variant carriers: 0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 495
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variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 21103
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 559
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16072
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.878223773511732e-4
allele num: 10314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8544
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.756322e6

FS
type: SiteQuality
SIO_000300: 1.957e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQ
type: SiteQuality
SIO_000300: 5.942e1

VQSLOD
type: SiteQuality
SIO_000300: 1.67e0

MQRankSum
type: SiteQuality
SIO_000300: 2.17e-1

QD
type: SiteQuality
SIO_000300: 2.194e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.436e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.69e-1

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 950
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GenotypeQuality
all individuals: 2257
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variant carriers: 0

GenotypeQuality
all individuals: 135
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 555
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1471
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 429
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variant carriers: 0

GenotypeQuality
all individuals: 6482
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10314
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66372
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169317118802619e-4
allele num: 8552
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.758671e6

MQRankSum
type: SiteQuality
SIO_000300: -6.5e-2

QD
type: SiteQuality
SIO_000300: 1.566e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 2.137e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.026e0

GenotypeQuality
all individuals: 1476
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 673
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2264
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 523
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variant carriers: 0

GenotypeQuality
all individuals: 271
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variant carriers: 0

GenotypeQuality
all individuals: 22322
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 579
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66382
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.679048776254123e-5
allele num: 11522
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8550
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.784260515603799e-4
allele num: 10318
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16124
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.514233797698365e-4
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.74e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.182e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-3

FS
type: SiteQuality
SIO_000300: 1.123e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.148e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

DP
type: SiteQuality
SIO_000300: 2.760709e6

GenotypeQuality
all individuals: 1489
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6689
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 23307
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variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
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variant carriers: 0

GenotypeQuality
all individuals: 959
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1909
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variant carriers: 0

GenotypeQuality
all individuals: 21092
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 194
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505933377507379e-5
allele num: 66404
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16144
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.88e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.87e-1

QD
type: SiteQuality
SIO_000300: 1.036e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.39e-1

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.899e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 2.356e0

DP
type: SiteQuality
SIO_000300: 2.769503e6

GenotypeQuality
all individuals: 105
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21090
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1500
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 455
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variant carriers: 0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 361
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variant carriers: 0

GenotypeQuality
all individuals: 78
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variant carriers: 0

GenotypeQuality
all individuals: 1927
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variant carriers: 0

GenotypeQuality
all individuals: 2309
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 692
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23476
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.678668215253581e-5
allele num: 10332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66408
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.169043722235212e-4
allele num: 8554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.636e0

MQRankSum
type: SiteQuality
SIO_000300: 2.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-2

MQ
type: SiteQuality
SIO_000300: 5.969e1

VQSLOD
type: SiteQuality
SIO_000300: -7.244e-1

QD
type: SiteQuality
SIO_000300: 2.026e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.518e0

DP
type: SiteQuality
SIO_000300: 2.772183e6

GenotypeQuality
all individuals: 77
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
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GenotypeQuality
all individuals: 95
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
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GenotypeQuality
all individuals: 21103
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 297
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1539
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6829
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503397678753984e-5
allele num: 66516
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 5
allele frequency: 3.067108330266225e-4
allele num: 16302
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

QD
type: SiteQuality
SIO_000300: 3.0e1

MQRankSum
type: SiteQuality
SIO_000300: -2.93e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.69e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.01e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.742e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.46e0

DP
type: SiteQuality
SIO_000300: 2.783992e6

GenotypeQuality
all individuals: 725
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21099
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 275
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
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GenotypeQuality
all individuals: 2409
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 6865
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variant carriers: 0

GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 986
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variant carriers: 0

GenotypeQuality
all individuals: 1999
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24024
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502810255177181e-5
allele num: 66542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.8e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.3e-1

QD
type: SiteQuality
SIO_000300: 1.673e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.64e-1

FS
type: SiteQuality
SIO_000300: 1.866e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.541e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.48e-1

MQ
type: SiteQuality
SIO_000300: 5.982e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

DP
type: SiteQuality
SIO_000300: 2.785452e6

GenotypeQuality
all individuals: 730
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21103
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 1573
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variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24193
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6878
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2007
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 995
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2422
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10392
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.005168890491646e-5
allele num: 66552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.35e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.57e-1

QD
type: SiteQuality
SIO_000300: 1.254e1

DP
type: SiteQuality
SIO_000300: 2.787199e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.55e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.574e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 1.726e0

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.165e0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2432
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2017
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 737
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21108
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 1002
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.029385034837928e-4
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16432
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 12
allele frequency: 1.802234771116184e-4
allele num: 66584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.065e0

QD
type: SiteQuality
SIO_000300: 1.236e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.64e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.89e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.48e-1

DP
type: SiteQuality
SIO_000300: 2.789112e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.57e-1

GenotypeQuality
all individuals: 10
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2437
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21100
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1587
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10398
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66592
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.332089552238806e-4
allele num: 8576
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.496e1

DP
type: SiteQuality
SIO_000300: 2.789066e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.7e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.53e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

FS
type: SiteQuality
SIO_000300: 1.098e0

MQRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.979e1

BaseQRankSum
type: SiteQuality
SIO_000300: -9.25e-1

GenotypeQuality
all individuals: 39
bin: 7.5e0
variant carriers: 5

GenotypeQuality
all individuals: 22936
bin: 6.25e1
variant carriers: 12

GenotypeQuality
all individuals: 9
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2124
bin: 7.75e1
variant carriers: 15

GenotypeQuality
all individuals: 129
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1790
bin: 7.25e1
variant carriers: 12

GenotypeQuality
all individuals: 1317
bin: 8.25e1
variant carriers: 25

GenotypeQuality
all individuals: 795
bin: 9.25e1
variant carriers: 30

GenotypeQuality
all individuals: 24241
bin: 9.75e1
variant carriers: 20942

GenotypeQuality
all individuals: 581
bin: 8.75e1
variant carriers: 22

African
type: Population
allele count: 509
allele frequency: 4.894230769230769e-2
allele num: 10400
num of homozygotes: 10

Other
type: Population
allele count: 203
allele frequency: 2.23568281938326e-1
allele num: 908
num of homozygotes: 26

Latino
type: Population
allele count: 1208
allele frequency: 1.048793193262719e-1
allele num: 11518
num of homozygotes: 80

East Asian
type: Population
allele count: 520
allele frequency: 6.067677946324387e-2
allele num: 8570
num of homozygotes: 19

South Asian
type: Population
allele count: 3169
allele frequency: 1.925273390036452e-1
allele num: 16460
num of homozygotes: 307

European (Non-Finnish)
type: Population
allele count: 16594
allele frequency: 2.491441955438112e-1
allele num: 66604
num of homozygotes: 2064

European (Finnish)
type: Population
allele count: 1579
allele frequency: 2.393149439224007e-1
allele num: 6598
num of homozygotes: 190

MQ
type: SiteQuality
SIO_000300: 5.968e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.49e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.81e0

MQRankSum
type: SiteQuality
SIO_000300: 1.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.05e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.949e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.74e-1

QD
type: SiteQuality
SIO_000300: 1.665e1

DP
type: SiteQuality
SIO_000300: 2.874602e6

GenotypeQuality
all individuals: 1127
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3136
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6394
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34428
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

VQSLOD
type: SiteQuality
SIO_000300: -6.815e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.29e-1

QD
type: SiteQuality
SIO_000300: 1.613e1

DP
type: SiteQuality
SIO_000300: 1.95799e6

MQ
type: SiteQuality
SIO_000300: 5.942e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.301e0

FS
type: SiteQuality
SIO_000300: 5.291e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.43e0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3136
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34428
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6394
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 14
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11516
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66650
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.29e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.55e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.301e0

VQSLOD
type: SiteQuality
SIO_000300: -6.815e-1