7-1097337-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097337
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097337
    reference: chr 7
allele count: 7
allele frequency: 7.111797456008453e-5
allele num: 98428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47558C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.186G>A
  hgvsp: ENST00000444847.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47558C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.186G>A
  hgvsp: ENST00000397095.1:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47558C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+64C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.186G>A
  hgvsp: ENST00000297468.3:c.186G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47558C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47558C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11606
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9990
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2614
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 608
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4051
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14610
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Pro62Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

7-1097337-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097337
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097337
    reference: chr 7
allele count: 3
allele frequency: 3.047913195432194e-5
allele num: 98428
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47558C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47558C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.186G>T
  hgvsp: ENST00000397095.1:c.186G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.186G>T
  hgvsp: ENST00000444847.1:c.186G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.186G>T
  hgvsp: ENST00000297468.3:c.186G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47558C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47558C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47558C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+64C>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21018
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5691
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9990
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11606
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 504
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3611
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro62Pro
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

7-1097340-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097340
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097340
    reference: chr 7
allele count: 1
allele frequency: 1.002024088659091e-5
allele num: 99798
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.189C>T
  hgvsp: ENST00000444847.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+61G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47561G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.189C>T
  hgvsp: ENST00000397095.1:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47561G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47561G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47561G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.189C>T
  hgvsp: ENST00000297468.3:c.189C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47561G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10797
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22728
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9651
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8823
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1762
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 822
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26510
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 868
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asp63Asp
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum

7-1097344-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097344
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097344
    reference: chr 7
allele count: 4
allele frequency: 3.938248267170763e-5
allele num: 101568
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47565A>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.193T>A
  hgvsp: ENSP00000297468.3:p.Tyr65Asn
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+57A>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.193T>A
  hgvsp: ENSP00000380283.1:p.Tyr65Asn
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47565A>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.193T>A
  hgvsp: ENSP00000410743.1:p.Tyr65Asn
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47565A>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47565A>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47565A>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9216
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8946
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4018
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1825
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25317
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 3101
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 475
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Tyr65Asn
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

7-1097348-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097348
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097348
    reference: chr 7
allele count: 1
allele frequency: 9.747728779194448e-6
allele num: 102588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.197T>C
  hgvsp: ENSP00000410743.1:p.Phe66Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47569A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47569A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47569A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+53A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47569A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.197T>C
  hgvsp: ENSP00000380283.1:p.Phe66Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47569A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.197T>C
  hgvsp: ENSP00000297468.3:p.Phe66Ser
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9459
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26594
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8723
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 437
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8483
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 817
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3129
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 793
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe66Ser
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

7-1097357-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097357
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097357
    reference: chr 7
allele count: 1
allele frequency: 9.595271450229326e-6
allele num: 104218
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47578A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47578A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+44A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47578A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.206T>C
  hgvsp: ENSP00000297468.3:p.Met69Thr
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47578A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47578A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.206T>C
  hgvsp: ENSP00000410743.1:p.Met69Thr
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.206T>C
  hgvsp: ENSP00000380283.1:p.Met69Thr
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10079
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27603
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3886
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 460
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2073
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7569
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7462
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2594
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1140
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30636
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met69Thr
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/7-1097361-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097361
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097361
    reference: chr 7
allele count: 8
allele frequency: 7.722902266671815e-5
allele num: 103588
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.210A>C
  hgvsp: ENST00000297468.3:c.210A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47582T>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47582T>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.210A>C
  hgvsp: ENST00000444847.1:c.210A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47582T>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.210A>C
  hgvsp: ENST00000397095.1:c.210A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+40T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47582T>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47582T>G
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7315
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27183
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10396
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7174
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4174
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1542
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 838
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2454
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ala70Ala
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

7-1097368-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097368
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097368
    reference: chr 7
allele count: 1
allele frequency: 9.650087815799124e-6
allele num: 103626
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47589C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47589C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.217G>A
  hgvsp: ENSP00000380283.1:p.Gly73Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47589C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47589C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47589C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+33C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.217G>A
  hgvsp: ENSP00000297468.3:p.Gly73Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.217G>A
  hgvsp: ENSP00000410743.1:p.Gly73Ser
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6654
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6717
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1005
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10657
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1103
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9253
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3310
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 523
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 738
  bin: 9.75e1
  variant carriers: 0
hgvs: p.Gly73Ser
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum

7-1097371-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097371
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097371
    reference: chr 7
allele count: 2
allele frequency: 1.904907040536422e-5
allele num: 104992
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.220C>T
  hgvsp: ENST00000444847.1:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47592G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.220C>T
  hgvsp: ENST00000297468.3:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47592G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.220C>T
  hgvsp: ENST00000397095.1:c.220C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47592G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47592G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47592G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+30G>A
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6404
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 892
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33507
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2106
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Leu74Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

7-1097374-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097374
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097374
    reference: chr 7
allele count: 1
allele frequency: 9.470414425335253e-6
allele num: 105592
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.223G>T
  hgvsp: ENSP00000410743.1:p.Val75Leu
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.223G>T
  hgvsp: ENSP00000297468.3:p.Val75Leu
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47595C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.223G>T
  hgvsp: ENSP00000380283.1:p.Val75Leu
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47595C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47595C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+27C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47595C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47595C>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11026
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28968
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 936
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3723
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2006
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1021
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val75Leu
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

7-1097381-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097381
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097381
    reference: chr 7
allele count: 1
allele frequency: 9.331666075661148e-6
allele num: 107162
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47602C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47602C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.230G>A
  hgvsp: ENSP00000410743.1:p.Ser77Asn
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47602C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.230G>A
  hgvsp: ENSP00000380283.1:p.Ser77Asn
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47602C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.230G>A
  hgvsp: ENSP00000297468.3:p.Ser77Asn
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+20C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47602C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12025
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5807
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5322
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4088
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 476
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1146
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser77Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum

7-1097382-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097382
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097382
    reference: chr 7
allele count: 5
allele frequency: 4.664788311906406e-5
allele num: 107186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.231C>T
  hgvsp: ENST00000444847.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.231C>T
  hgvsp: ENST00000297468.3:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47603G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47603G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47603G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47603G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.231C>T
  hgvsp: ENST00000397095.1:c.231C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+19G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47603G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1000
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5227
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12230
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29870
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5714
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2509
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1261
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser77Ser
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-1097383-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097383
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097383
    reference: chr 7
allele count: 6
allele frequency: 5.55926173004225e-5
allele num: 107928
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47604C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.232G>A
  hgvsp: ENSP00000410743.1:p.Ala78Thr
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47604C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47604C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+18C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47604C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.232G>A
  hgvsp: ENSP00000297468.3:p.Ala78Thr
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.232G>A
  hgvsp: ENSP00000380283.1:p.Ala78Thr
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47604C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12549
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30520
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5478
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7120
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 974
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ala78Thr
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: BaseQRankSum

7-1097392-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097392
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097392
    reference: chr 7
allele count: 1
allele frequency: 9.044862518089725e-6
allele num: 110560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.241C>G
  hgvsp: ENSP00000410743.1:p.Pro81Ala
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47613G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47613G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.241C>G
  hgvsp: ENSP00000380283.1:p.Pro81Ala
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47613G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47613G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.241C>G
  hgvsp: ENSP00000297468.3:p.Pro81Ala
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47613G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+9G>C
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2852
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13757
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3495
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1144
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro81Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ

7-1097393-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097393
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097393
    reference: chr 7
allele count: 1
allele frequency: 9.023479092598943e-6
allele num: 110822
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+8G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47614G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47614G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47614G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47614G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47614G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.242C>T
  hgvsp: ENSP00000380283.1:p.Pro81Leu
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.242C>T
  hgvsp: ENSP00000410743.1:p.Pro81Leu
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.242C>T
  hgvsp: ENSP00000297468.3:p.Pro81Leu
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 13863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32594
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2926
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 708
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3382
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 572
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1116
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Pro81Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

7-1097394-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097394
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097394
    reference: chr 7
allele count: 15182
allele frequency: 1.356020007145409e-1
allele num: 111960
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+7A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47615A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.243T>C
  hgvsp: ENST00000444847.1:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47615A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47615A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.243T>C
  hgvsp: ENST00000397095.1:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47615A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.243T>C
  hgvsp: ENST00000297468.3:c.243T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47615A>G
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27271
  bin: 2.25e1
  variant carriers: 1536
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 3.25e1
  variant carriers: 2101
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 2.5e0
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.75e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.25e1
  variant carriers: 182
genotype depth: GenotypeDepth
  all individuals: 3575
  bin: 7.5e0
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 6.25e1
  variant carriers: 348
genotype depth: GenotypeDepth
  all individuals: 3089
  bin: 1.25e1
  variant carriers: 560
genotype depth: GenotypeDepth
  all individuals: 774
  bin: 5.25e1
  variant carriers: 752
genotype depth: GenotypeDepth
  all individuals: 12738
  bin: 2.75e1
  variant carriers: 1944
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 5.75e1
  variant carriers: 539
genotype depth: GenotypeDepth
  all individuals: 2136
  bin: 3.75e1
  variant carriers: 1934
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 2147
  bin: 1.75e1
  variant carriers: 1028
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 4.25e1
  variant carriers: 1482
genotype depth: GenotypeDepth
  all individuals: 1145
  bin: 4.75e1
  variant carriers: 1108
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 8.75e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 8.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 106
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 3.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 4148
  bin: 2.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.75e1
  variant carriers: 45
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 2.5e0
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.25e1
  variant carriers: 35
hgvs: n.1497+7A>G
num of homozygotes: 1185
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP

7-1097396-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097396
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097396
    reference: chr 7
allele count: 6
allele frequency: 5.319337565161885e-5
allele num: 112796
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47617A>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.245T>G
  hgvsp: ENSP00000297468.3:p.Val82Gly
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47617A>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.245T>G
  hgvsp: ENSP00000380283.1:p.Val82Gly
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.245T>G
  hgvsp: ENSP00000410743.1:p.Val82Gly
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1497+5A>C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47617A>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47617A>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47617A>C
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29142
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2057
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17115
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3851
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2999
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41723
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1138
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val82Gly
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ

7-1097406-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097406
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097406
    reference: chr 7
allele count: 9
allele frequency: 7.892106140058577e-5
allele num: 114038
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1492G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47627G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47627G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47627G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.255C>T
  hgvsp: ENST00000444847.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47627G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.255C>T
  hgvsp: ENST00000397095.1:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47627G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.255C>T
  hgvsp: ENST00000297468.3:c.255C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3990
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2841
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1795
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17963
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 875
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3529
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Leu85Leu
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS

7-1097407-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097407
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097407
    reference: chr 7
allele count: 1
allele frequency: 8.738508860847985e-6
allele num: 114436
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.256G>A
  hgvsp: ENSP00000380283.1:p.Gly86Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47628C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.256G>A
  hgvsp: ENSP00000297468.3:p.Gly86Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47628C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1491C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47628C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.256G>A
  hgvsp: ENSP00000410743.1:p.Gly86Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47628C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47628C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43299
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly86Ser
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum

7-1097407-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097407
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097407
    reference: chr 7
allele count: 1
allele frequency: 8.738508860847985e-6
allele num: 114436
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.256G>T
  hgvsp: ENSP00000297468.3:p.Gly86Cys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47628C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.256G>T
  hgvsp: ENSP00000410743.1:p.Gly86Cys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1491C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47628C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47628C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47628C>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.256G>T
  hgvsp: ENSP00000380283.1:p.Gly86Cys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47628C>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18187
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29788
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 281
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 502
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43299
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gly86Cys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

7-1097408-GCCC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097408
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097405
    reference: chr 7
allele count: 24
allele frequency: 2.096289567465586e-4
allele num: 114488
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.261_263delCCC
  hgvsp: ENSP00000380283.1:p.Pro88del
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1487_1489delGGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47632_267-47630delGGG
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47632_130-47630delGGG
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.261_263delCCC
  hgvsp: ENSP00000410743.1:p.Pro88del
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47632_130-47630delGGG
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.261_263delCCC
  hgvsp: ENSP00000297468.3:p.Pro88del
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47632_130-47630delGGG
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47632_130-47630delGGG
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18320
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29652
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 932
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro88del
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: GCCC
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-1097408-G-GC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097408
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097409
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 114488
alternate allele: GC
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47630dupG
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.263dupC
  hgvsp: ENSP00000297468.3:p.Ser89GlufsTer348
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47630dupG
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.263dupC
  hgvsp: ENSP00000410743.1:p.Ser89GlufsTer?
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47630dupG
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.263dupC
  hgvsp: ENSP00000380283.1:p.Ser89GlufsTer348
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1489dupG
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47630dupG
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47630dupG
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: frameshift
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18320
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ser89GlufsTer348
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: DP

7-1097408-GC-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097408
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097407
    reference: chr 7
allele count: 2
allele frequency: 1.746907972887988e-5
allele num: 114488
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47630delG
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47630delG
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.263delC
  hgvsp: ENSP00000410743.1:p.Pro88ArgfsTer36
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47630delG
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1489delG
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47630delG
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.263delC
  hgvsp: ENSP00000297468.3:p.Pro88ArgfsTer36
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.263delC
  hgvsp: ENSP00000380283.1:p.Pro88ArgfsTer36
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47630delG
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1641
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29652
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2306
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18320
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 331
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 980
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43307
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4721
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 7.5e0
  variant carriers: 1
hgvs: p.Pro88ArgfsTer36
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: GC
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-1097409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097409
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097409
    reference: chr 7
allele count: 1
allele frequency: 8.741411563139215e-6
allele num: 114398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.258C>T
  hgvsp: ENST00000444847.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47630G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47630G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.258C>T
  hgvsp: ENST00000297468.3:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.258C>T
  hgvsp: ENST00000397095.1:c.258C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1489G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47630G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47630G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47630G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1626
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2486
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29449
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4180
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2282
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 602
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1049
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Gly86Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
population: East Asian
population: African
population: European (Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-1097412-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097412
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097412
    reference: chr 7
allele count: 1
allele frequency: 8.673478238243101e-6
allele num: 115294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47633G>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1486G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.261C>A
  hgvsp: ENST00000444847.1:c.261C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47633G>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.261C>A
  hgvsp: ENST00000397095.1:c.261C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47633G>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47633G>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.261C>A
  hgvsp: ENST00000297468.3:c.261C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47633G>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19076
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29712
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1443
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 599
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro87Pro
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ

7-1097413-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097413
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097413
    reference: chr 7
allele count: 1
allele frequency: 8.657409010631298e-6
allele num: 115508
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47634G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47634G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47634G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47634G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1485G>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.262C>G
  hgvsp: ENSP00000380283.1:p.Pro88Ala
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.262C>G
  hgvsp: ENSP00000297468.3:p.Pro88Ala
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47634G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.262C>G
  hgvsp: ENSP00000410743.1:p.Pro88Ala
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29870
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 181
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 832
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 140
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro88Ala
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum

7-1097414-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097414
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097414
    reference: chr 7
allele count: 3
allele frequency: 2.593585199273796e-5
allele num: 115670
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.263C>G
  hgvsp: ENSP00000380283.1:p.Pro88Arg
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47635G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47635G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47635G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47635G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47635G>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1484G>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.263C>G
  hgvsp: ENSP00000297468.3:p.Pro88Arg
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.263C>G
  hgvsp: ENSP00000410743.1:p.Pro88Arg
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 384
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4842
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Pro88Arg
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: DP

7-1097414-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097414
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097414
    reference: chr 7
allele count: 1
allele frequency: 8.64528399757932e-6
allele num: 115670
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.263C>T
  hgvsp: ENSP00000297468.3:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1484G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47635G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.263C>T
  hgvsp: ENSP00000380283.1:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.263C>T
  hgvsp: ENSP00000410743.1:p.Pro88Leu
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47635G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47635G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47635G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47635G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19267
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 620
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro88Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

7-1097417-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097417
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097417
    reference: chr 7
allele count: 2
allele frequency: 1.720074995269794e-5
allele num: 116274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47638C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.266G>A
  hgvsp: ENSP00000410743.1:p.Ser89Asn
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47638C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.266G>A
  hgvsp: ENSP00000297468.3:p.Ser89Asn
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47638C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47638C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.266G>A
  hgvsp: ENSP00000380283.1:p.Ser89Asn
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1481C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47638C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1956
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30487
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4138
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19458
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 511
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser89Asn
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

7-1097422-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097422
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097422
    reference: chr 7
allele count: 3
allele frequency: 2.568713074749551e-5
allele num: 116790
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1476G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.271C>T
  hgvsp: ENSP00000380283.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.271C>T
  hgvsp: ENSP00000297468.3:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47643G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.271C>T
  hgvsp: ENSP00000410743.1:p.Arg91Trp
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47643G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47643G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47643G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47643G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 987
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1718
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1460
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30784
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19722
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 519
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg91Trp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

7-1097423-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097423
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097423
    reference: chr 7
allele count: 4
allele frequency: 3.421376762009033e-5
allele num: 116912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47644C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47644C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1475C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47644C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.272G>A
  hgvsp: ENSP00000380283.1:p.Arg91Gln
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.272G>A
  hgvsp: ENSP00000410743.1:p.Arg91Gln
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.272G>A
  hgvsp: ENSP00000297468.3:p.Arg91Gln
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47644C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47644C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 941
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4181
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19828
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30829
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 445
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg91Gln
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-1097424-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097424
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097424
    reference: chr 7
allele count: 2
allele frequency: 1.70826286749005e-5
allele num: 117078
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.273G>C
  hgvsp: ENST00000444847.1:c.273G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1474C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47645C>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.273G>C
  hgvsp: ENST00000297468.3:c.273G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47645C>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47645C>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.273G>C
  hgvsp: ENST00000397095.1:c.273G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47645C>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47645C>G
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4166
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30892
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19933
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1377
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg91Arg
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

7-1097429-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097429
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097429
    reference: chr 7
allele count: 2
allele frequency: 1.701519456874989e-5
allele num: 117542
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47650G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47650G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47650G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47650G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.278C>T
  hgvsp: ENSP00000380283.1:p.Ala93Val
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.278C>T
  hgvsp: ENSP00000297468.3:p.Ala93Val
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47650G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.278C>T
  hgvsp: ENSP00000410743.1:p.Ala93Val
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1469G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20190
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1212
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala93Val
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum

7-1097430-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097430
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097430
    reference: chr 7
allele count: 2549
allele frequency: 2.165417877227857e-2
allele num: 117714
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47651C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.279G>A
  hgvsp: ENST00000397095.1:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.279G>A
  hgvsp: ENST00000297468.3:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47651C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1468C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.279G>A
  hgvsp: ENST00000444847.1:c.279G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47651C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47651C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47651C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 3.75e1
  variant carriers: 235
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 5.75e1
  variant carriers: 252
genotype depth: GenotypeDepth
  all individuals: 19703
  bin: 2.75e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 30118
  bin: 2.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 1.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 4186
  bin: 3.25e1
  variant carriers: 190
genotype depth: GenotypeDepth
  all individuals: 1355
  bin: 7.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 4.25e1
  variant carriers: 263
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.25e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.75e1
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 6.25e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 9.75e1
  variant carriers: 62
genotype depth: GenotypeDepth
  all individuals: 329
  bin: 5.25e1
  variant carriers: 275
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 4.75e1
  variant carriers: 282
genotype depth: GenotypeDepth
  all individuals: 623
  bin: 1.75e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.75e1
  variant carriers: 168
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1000
  bin: 7.25e1
  variant carriers: 1
hgvs: p.Ala93Ala
num of homozygotes: 33
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-1097432-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097432
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097432
    reference: chr 7
allele count: 1
allele frequency: 8.476731372382808e-6
allele num: 117970
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47653A>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.281T>G
  hgvsp: ENSP00000380283.1:p.Leu94Arg
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47653A>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47653A>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47653A>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.281T>G
  hgvsp: ENSP00000297468.3:p.Leu94Arg
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1466A>C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.281T>G
  hgvsp: ENSP00000410743.1:p.Leu94Arg
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47653A>C
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20986
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1078
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30751
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 660
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1275
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5092
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Leu94Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/7-1097437-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097437
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097437
    reference: chr 7
allele count: 1
allele frequency: 8.459234946791412e-6
allele num: 118214
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1461T>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.286A>C
  hgvsp: ENSP00000297468.3:p.Ser96Arg
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47658T>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.286A>C
  hgvsp: ENSP00000380283.1:p.Ser96Arg
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47658T>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.286A>C
  hgvsp: ENSP00000410743.1:p.Ser96Arg
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47658T>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47658T>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47658T>G
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21139
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4494
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 957
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 320
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5121
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser96Arg
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD

7-1097440-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097440
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097440
    reference: chr 7
allele count: 1
allele frequency: 8.450370971285639e-6
allele num: 118338
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1458C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47661C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.289G>A
  hgvsp: ENSP00000380283.1:p.Val97Met
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.289G>A
  hgvsp: ENSP00000297468.3:p.Val97Met
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47661C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47661C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47661C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47661C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.289G>A
  hgvsp: ENSP00000410743.1:p.Val97Met
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21198
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Val97Met
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: QD

7-1097443-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097443
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097443
    reference: chr 7
allele count: 1
allele frequency: 8.443806467955754e-6
allele num: 118430
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.292G>A
  hgvsp: ENSP00000410743.1:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47664C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1455C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47664C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47664C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47664C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.292G>A
  hgvsp: ENSP00000380283.1:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.292G>A
  hgvsp: ENSP00000297468.3:p.Gly98Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47664C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 895
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4518
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30992
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21275
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1085
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49297
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 189
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Gly98Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: G
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

7-1097445-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097445
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097445
    reference: chr 7
allele count: 3
allele frequency: 2.533056385835149e-5
allele num: 118434
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47666G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.294C>T
  hgvsp: ENST00000297468.3:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47666G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47666G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.294C>T
  hgvsp: ENST00000397095.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1453G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47666G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47666G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.294C>T
  hgvsp: ENST00000444847.1:c.294C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4537
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30933
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1093
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 870
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly98Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-1097446-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097446
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097446
    reference: chr 7
allele count: 1
allele frequency: 8.434832484226864e-6
allele num: 118556
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47667C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47667C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.295G>A
  hgvsp: ENSP00000380283.1:p.Gly99Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.295G>A
  hgvsp: ENSP00000410743.1:p.Gly99Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47667C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47667C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.295G>A
  hgvsp: ENSP00000297468.3:p.Gly99Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47667C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1452C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4531
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31002
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 841
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21385
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly99Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-1097448-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097448
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097448
    reference: chr 7
allele count: 2
allele frequency: 1.686482840037103e-5
allele num: 118590
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47669G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47669G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.297C>T
  hgvsp: ENST00000397095.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1450G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47669G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47669G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.297C>T
  hgvsp: ENST00000444847.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.297C>T
  hgvsp: ENST00000297468.3:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47669G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1050
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21455
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30965
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly99Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: South Asian
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ

7-1097449-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097449
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097449
    reference: chr 7
allele count: 27
allele frequency: 2.274335388658647e-4
allele num: 118716
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47670C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47670C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47670C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.298G>A
  hgvsp: ENSP00000410743.1:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.298G>A
  hgvsp: ENSP00000380283.1:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1449C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47670C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.298G>A
  hgvsp: ENSP00000297468.3:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47670C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21515
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31011
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5175
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49698
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Glu100Lys
num of homozygotes: 0
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQ

7-1097458-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097458
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097458
    reference: chr 7
allele count: 3
allele frequency: 2.520076610328954e-5
allele num: 119044
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1440C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.307G>A
  hgvsp: ENSP00000297468.3:p.Val103Met
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47679C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.307G>A
  hgvsp: ENSP00000380283.1:p.Val103Met
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47679C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47679C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47679C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.307G>A
  hgvsp: ENSP00000410743.1:p.Val103Met
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47679C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21655
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 916
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 648
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50091
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val103Met
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

7-1097477-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097477
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097477
    reference: chr 7
allele count: 2
allele frequency: 1.67372420372571e-5
allele num: 119494
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47698A>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.326T>G
  hgvsp: ENSP00000410743.1:p.Phe109Cys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1421A>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47698A>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.326T>G
  hgvsp: ENSP00000380283.1:p.Phe109Cys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.326T>G
  hgvsp: ENSP00000297468.3:p.Phe109Cys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47698A>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47698A>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47698A>C
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31413
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21831
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 928
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50428
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe109Cys
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD

http://identifiers.org/exac.variant/7-1097479-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097479
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097479
    reference: chr 7
allele count: 1
allele frequency: 8.366800535475235e-6
allele num: 119520
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47700T>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1419T>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47700T>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.328A>C
  hgvsp: ENSP00000410743.1:p.Asn110His
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47700T>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47700T>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.328A>C
  hgvsp: ENSP00000297468.3:p.Asn110His
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.328A>C
  hgvsp: ENSP00000380283.1:p.Asn110His
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47700T>G
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4593
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31423
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1130
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn110His
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: A
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff

7-1097480-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097480
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097480
    reference: chr 7
allele count: 2
allele frequency: 1.673080140538732e-5
allele num: 119540
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47701T>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47701T>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.329A>G
  hgvsp: ENSP00000380283.1:p.Asn110Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47701T>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.329A>G
  hgvsp: ENSP00000297468.3:p.Asn110Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47701T>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.329A>G
  hgvsp: ENSP00000410743.1:p.Asn110Ser
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1418T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47701T>C
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21849
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31422
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 737
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4590
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1129
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn110Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

7-1097484-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097484
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097484
    reference: chr 7
allele count: 1
allele frequency: 8.362462577979963e-6
allele num: 119582
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.333G>A
  hgvsp: ENST00000297468.3:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1414C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.333G>A
  hgvsp: ENST00000397095.1:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47705C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47705C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.333G>A
  hgvsp: ENST00000444847.1:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47705C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47705C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47705C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 503
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21855
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 894
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val111Val
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

7-1097494-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097494
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097494
    reference: chr 7
allele count: 1
allele frequency: 8.355614973262032e-6
allele num: 119680
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.343G>A
  hgvsp: ENSP00000380283.1:p.Val115Met
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47715C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47715C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.343G>A
  hgvsp: ENSP00000410743.1:p.Val115Met
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47715C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.343G>A
  hgvsp: ENSP00000297468.3:p.Val115Met
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47715C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47715C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1404C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31428
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21913
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4608
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 680
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 650
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val115Met
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-1097510-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097510
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097510
    reference: chr 7
allele count: 14
allele frequency: 1.168419295610082e-4
allele num: 119820
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.359C>A
  hgvsp: ENSP00000380283.1:p.Thr120Asn
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47731G>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47731G>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47731G>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.359C>A
  hgvsp: ENSP00000410743.1:p.Thr120Asn
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47731G>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.359C>A
  hgvsp: ENSP00000297468.3:p.Thr120Asn
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47731G>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1388G>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31404
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 468
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21992
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1128
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr120Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-1097511-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097511
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097511
    reference: chr 7
allele count: 3
allele frequency: 2.503755633450175e-5
allele num: 119820
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.360C>T
  hgvsp: ENST00000297468.3:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1387G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47732G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47732G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.360C>T
  hgvsp: ENST00000397095.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47732G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.360C>T
  hgvsp: ENST00000444847.1:c.360C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47732G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47732G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31396
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22005
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 272
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4617
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 785
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr120Thr
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: African
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-1097512-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097512
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097512
    reference: chr 7
allele count: 3
allele frequency: 2.503504906869618e-5
allele num: 119832
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.361G>A
  hgvsp: ENSP00000410743.1:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47733C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47733C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47733C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47733C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47733C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.361G>A
  hgvsp: ENSP00000297468.3:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.361G>A
  hgvsp: ENSP00000380283.1:p.Ala121Thr
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1386C>T
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 622
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 646
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22023
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31385
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 442
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ala121Thr
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: Latino
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-1097526-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097526
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097526
    reference: chr 7
allele count: 2
allele frequency: 1.667778519012675e-5
allele num: 119920
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1372G>A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47747G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.375C>T
  hgvsp: ENST00000397095.1:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47747G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47747G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47747G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.375C>T
  hgvsp: ENST00000297468.3:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.375C>T
  hgvsp: ENST00000444847.1:c.375C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47747G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4614
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22083
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31467
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu125Leu
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff

7-1097529-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097529
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097529
    reference: chr 7
allele count: 13
allele frequency: 1.083839124924965e-4
allele num: 119944
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47750G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47750G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.378C>T
  hgvsp: ENST00000397095.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47750G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47750G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47750G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1369G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.378C>T
  hgvsp: ENST00000297468.3:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.378C>T
  hgvsp: ENST00000444847.1:c.378C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22091
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50791
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp126Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum

7-1097530-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097530
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097530
    reference: chr 7
allele count: 1
allele frequency: 8.336668000533546e-6
allele num: 119952
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.379C>T
  hgvsp: ENSP00000410743.1:p.His127Tyr
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.379C>T
  hgvsp: ENSP00000380283.1:p.His127Tyr
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47751G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1368G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47751G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.379C>T
  hgvsp: ENSP00000297468.3:p.His127Tyr
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47751G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47751G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47751G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22100
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31478
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4623
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
hgvs: p.His127Tyr
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: QD

7-1097538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097538
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097538
    reference: chr 7
allele count: 6
allele frequency: 5.000166672222407e-5
allele num: 119996
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47759G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.387C>T
  hgvsp: ENST00000397095.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47759G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.387C>T
  hgvsp: ENST00000297468.3:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47759G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1360G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.387C>T
  hgvsp: ENST00000444847.1:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47759G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47759G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31483
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4630
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 559
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22112
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile129Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: African
reference allele: C
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-1097539-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097539
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097539
    reference: chr 7
allele count: 1
allele frequency: 8.332222370350619e-6
allele num: 120016
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47760C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47760C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.388G>A
  hgvsp: ENSP00000380283.1:p.Glu130Lys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47760C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47760C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.388G>A
  hgvsp: ENSP00000410743.1:p.Glu130Lys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.388G>A
  hgvsp: ENSP00000297468.3:p.Glu130Lys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1359C>T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47760C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Glu130Lys
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: QD

7-1097539-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097539
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097539
    reference: chr 7
allele count: 1
allele frequency: 8.332222370350619e-6
allele num: 120016
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.388G>C
  hgvsp: ENSP00000297468.3:p.Glu130Gln
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47760C>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47760C>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.388G>C
  hgvsp: ENSP00000410743.1:p.Glu130Gln
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1359C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47760C>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47760C>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.388G>C
  hgvsp: ENSP00000380283.1:p.Glu130Gln
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47760C>G
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5277
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50842
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 419
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu130Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: InbreedingCoeff

7-1097541-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097541
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097541
    reference: chr 7
allele count: 1
allele frequency: 8.332083520805212e-6
allele num: 120018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47762C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47762C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47762C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47762C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.390G>A
  hgvsp: ENST00000297468.3:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.390G>A
  hgvsp: ENST00000397095.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47762C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.390G>A
  hgvsp: ENST00000444847.1:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1357C>T
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31469
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22134
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu130Glu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

7-1097542-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097542
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097542
    reference: chr 7
allele count: 7
allele frequency: 5.832847262728106e-5
allele num: 120010
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.391C>T
  hgvsp: ENSP00000297468.3:p.Arg131Cys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47763G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47763G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1356G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47763G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.391C>T
  hgvsp: ENSP00000380283.1:p.Arg131Cys
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47763G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47763G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.391C>T
  hgvsp: ENSP00000410743.1:p.Arg131Cys
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31434
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22132
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4633
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5279
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg131Cys
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD

7-1097544-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097544
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097544
    reference: chr 7
allele count: 15
allele frequency: 1.24962511246626e-4
allele num: 120036
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.393T>C
  hgvsp: ENST00000397095.1:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47765A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.393T>C
  hgvsp: ENST00000444847.1:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47765A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47765A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47765A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47765A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.393T>C
  hgvsp: ENST00000297468.3:c.393T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1354A>G
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4624
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22159
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5288
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Arg131Arg
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-1097546-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097546
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097546
    reference: chr 7
allele count: 4
allele frequency: 3.332167074857133e-5
allele num: 120042
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47767G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.395C>T
  hgvsp: ENSP00000410743.1:p.Ala132Val
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.395C>T
  hgvsp: ENSP00000297468.3:p.Ala132Val
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47767G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1352G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.395C>T
  hgvsp: ENSP00000380283.1:p.Ala132Val
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47767G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47767G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47767G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 630
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 825
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50791
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala132Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

7-1097549-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097549
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097549
    reference: chr 7
allele count: 1
allele frequency: 8.329723786359244e-6
allele num: 120052
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.398T>C
  hgvsp: ENSP00000410743.1:p.Leu133Pro
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.398T>C
  hgvsp: ENSP00000380283.1:p.Leu133Pro
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47770A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47770A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1349A>G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47770A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47770A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47770A>G
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.398T>C
  hgvsp: ENSP00000297468.3:p.Leu133Pro
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22152
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu133Pro
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

7-1097552-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097552
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097552
    reference: chr 7
allele count: 2
allele frequency: 1.666055779547499e-5
allele num: 120044
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47773G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.401C>T
  hgvsp: ENSP00000410743.1:p.Pro134Leu
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47773G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.401C>T
  hgvsp: ENSP00000380283.1:p.Pro134Leu
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1346G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.401C>T
  hgvsp: ENSP00000297468.3:p.Pro134Leu
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47773G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47773G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47773G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31440
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4629
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22150
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50749
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Pro134Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum

7-1097553-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097553
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097553
    reference: chr 7
allele count: 1
allele frequency: 8.330556481172942e-6
allele num: 120040
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.402G>A
  hgvsp: ENST00000444847.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47774C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.402G>A
  hgvsp: ENST00000297468.3:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47774C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47774C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1345C>T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.402G>A
  hgvsp: ENST00000397095.1:c.402G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47774C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47774C>T
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4626
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31437
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Pro134Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

7-1097554-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097554
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097554
    reference: chr 7
allele count: 2
allele frequency: 1.665889251682548e-5
allele num: 120056
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.403C>T
  hgvsp: ENSP00000380283.1:p.Arg135Trp
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47775G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1344G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.403C>T
  hgvsp: ENSP00000410743.1:p.Arg135Trp
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47775G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47775G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47775G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47775G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.403C>T
  hgvsp: ENSP00000297468.3:p.Arg135Trp
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 536
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4627
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31442
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22168
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 9.75e1
  variant carriers: 2
hgvs: p.Arg135Trp
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP

7-1097555-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097555
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097555
    reference: chr 7
allele count: 206
allele frequency: 1.715923099990004e-3
allele num: 120052
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1343C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47776C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47776C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47776C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.404G>A
  hgvsp: ENSP00000297468.3:p.Arg135Gln
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47776C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47776C>T
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.404G>A
  hgvsp: ENSP00000410743.1:p.Arg135Gln
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.404G>A
  hgvsp: ENSP00000380283.1:p.Arg135Gln
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 22119
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4601
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 9.75e1
  variant carriers: 87
genotype depth: GenotypeDepth
  all individuals: 628
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31330
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 4.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5260
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Arg135Gln
num of homozygotes: 2
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD

7-1097558-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097558
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097558
    reference: chr 7
allele count: 1
allele frequency: 8.327642777435419e-6
allele num: 120082
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47779G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47779G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.407C>T
  hgvsp: ENSP00000380283.1:p.Thr136Ile
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47779G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.407C>T
  hgvsp: ENSP00000410743.1:p.Thr136Ile
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47779G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.407C>T
  hgvsp: ENSP00000297468.3:p.Thr136Ile
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1340G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47779G>A
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31380
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22238
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4636
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5291
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50871
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr136Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: European (Finnish)
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: MQ

7-1097559-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097559
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097559
    reference: chr 7
allele count: 1
allele frequency: 8.327226700419692e-6
allele num: 120088
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47780G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47780G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47780G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47780G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.408C>T
  hgvsp: ENST00000444847.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.408C>T
  hgvsp: ENST00000297468.3:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47780G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1339G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.408C>T
  hgvsp: ENST00000397095.1:c.408C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22241
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Thr136Thr
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff

7-1097563-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097563
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097563
    reference: chr 7
allele count: 1
allele frequency: 8.326671995736744e-6
allele num: 120096
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1335T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47784T>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.412A>G
  hgvsp: ENSP00000297468.3:p.Met138Val
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47784T>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47784T>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.412A>G
  hgvsp: ENSP00000380283.1:p.Met138Val
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.412A>G
  hgvsp: ENSP00000410743.1:p.Met138Val
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47784T>C
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47784T>C
  variant of: http://identifiers.org/hgnc/22421
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31375
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22245
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 411
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50899
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Met138Val
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum

7-1097571-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 1097571
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 1097571
    reference: chr 7
allele count: 21
allele frequency: 1.749008894959523e-4
allele num: 120068
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000257607
  ensembl transcript: ENST00000549241
  gene symbol: RP11-449P15.1
  hgvsc: ENST00000549241.1:n.1327G>A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000297468
  ensembl transcript: ENST00000297468
  gene symbol: GPR146
  hgvsc: ENST00000297468.3:c.420C>T
  hgvsp: ENST00000297468.3:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000420130
  ensembl transcript: ENST00000491163
  gene symbol: C7orf50
  hgvsc: ENST00000491163.1:c.130-47792G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000380283
  ensembl transcript: ENST00000397095
  gene symbol: GPR146
  hgvsc: ENST00000397095.1:c.420C>T
  hgvsp: ENST00000397095.1:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000350011
  ensembl transcript: ENST00000357429
  gene symbol: C7orf50
  hgvsc: ENST00000357429.6:c.130-47792G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380286
  ensembl transcript: ENST00000397098
  gene symbol: C7orf50
  hgvsc: ENST00000397098.3:c.130-47792G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl protein: ENSP00000380288
  ensembl transcript: ENST00000397100
  gene symbol: C7orf50
  hgvsc: ENST00000397100.2:c.130-47792G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000146540
  ensembl transcript: ENST00000488073
  gene symbol: C7orf50
  hgvsc: ENST00000488073.1:n.267-47792G>A
  variant of: http://identifiers.org/hgnc/22421
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000164849
  ensembl protein: ENSP00000410743
  ensembl transcript: ENST00000444847
  gene symbol: GPR146
  hgvsc: ENST00000444847.1:c.420C>T
  hgvsp: ENST00000444847.1:c.420C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/21718
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4641
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22264
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ser140Ser
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 24184
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3611
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 504
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2601
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 992
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4136
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 5.935422602089269e-4
allele num: 8424
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.906077348066299e-5
allele num: 14480
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7010
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.457725947521866e-3
allele num: 686
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8700
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.74e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.076e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

DP
type: SiteQuality
SIO_000300: 1.112094e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 1418
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14610
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 401
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1039
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 676
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24184
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 177
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2601
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4051
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2614
bin: 3.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14480
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8424
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8700
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.455338958393948e-5
allele num: 54992
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4136
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.71e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.74e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.112094e6

QD
type: SiteQuality
SIO_000300: 1.076e1

GenotypeQuality
all individuals: 895
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2310
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3660
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14057
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 411
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 648
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2792
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variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 735
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 173
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.794236911041734e-5
allele num: 55734
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14608
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.833e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.231e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

MQRankSum
type: SiteQuality
SIO_000300: -2.07e-1

QD
type: SiteQuality
SIO_000300: 1.123e1

VQSLOD
type: SiteQuality
SIO_000300: -1.888e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.130893e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.308e0

GenotypeQuality
all individuals: 29818
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2864
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1926
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 820
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3019
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 669
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 850
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12953
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8658
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14770
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 7.064142413111048e-5
allele num: 56624
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7218
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

FS
type: SiteQuality
SIO_000300: 7.282e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.84e0

DP
type: SiteQuality
SIO_000300: 1.162012e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.29e-1

QD
type: SiteQuality
SIO_000300: 1.127e1

GenotypeQuality
all individuals: 761
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12306
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 742
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1700
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2845
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 149
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2647
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31137
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 712
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.146000458400183e-4
allele num: 8726
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14882
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57154
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.179421e6

MQRankSum
type: SiteQuality
SIO_000300: -6.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

FS
type: SiteQuality
SIO_000300: 4.548e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.15e0

QD
type: SiteQuality
SIO_000300: 8.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.18e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
all individuals: 180
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 265
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2513
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11050
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1078
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3170
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 475
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 743
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15096
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.131477709889115e-4
allele num: 8838
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57788
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7448
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -6.272e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.68e0

MQ
type: SiteQuality
SIO_000300: 5.177e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

FS
type: SiteQuality
SIO_000300: 2.447e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 1.208938e6

QD
type: SiteQuality
SIO_000300: 8.710000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.74e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

GenotypeQuality
all individuals: 391
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 484
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 9.25e1
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GenotypeQuality
all individuals: 750
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2558
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1163
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3125
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1304
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31222
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 746
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8692
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 718
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9668
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4522
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15156
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.394602886827976e-4
allele num: 57364
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 1.217629e6

QD
type: SiteQuality
SIO_000300: 1.202e1

FS
type: SiteQuality
SIO_000300: 3.404e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.89e-1

MQ
type: SiteQuality
SIO_000300: 5.925e1

GenotypeQuality
all individuals: 1534
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 424
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 632
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 32337
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2245
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1027
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 194
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variant carriers: 1

GenotypeQuality
all individuals: 385
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1543
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 812
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57106
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.540222367560497e-5
allele num: 15290
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.544e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.312e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.308e-1

DP
type: SiteQuality
SIO_000300: 1.230764e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -2.31e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.86e-1

GenotypeQuality
all individuals: 474
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8905
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1359
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GenotypeQuality
all individuals: 754
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 749
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 734
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8748
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57838
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9946
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4738
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.299883010529053e-4
allele num: 15386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7610
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.929999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.904e0

FS
type: SiteQuality
SIO_000300: 1.2074e1

VQSLOD
type: SiteQuality
SIO_000300: -1.607e0

QD
type: SiteQuality
SIO_000300: 1.288e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.49e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

DP
type: SiteQuality
SIO_000300: 1.227318e6

GenotypeQuality
all individuals: 390
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2091
bin: 3.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7674
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 728
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4792
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10020
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.461617989144482e-5
allele num: 15476
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58108
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.8e-1

DP
type: SiteQuality
SIO_000300: 1.238334e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.1e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQRankSum
type: SiteQuality
SIO_000300: 7.82e-1

FS
type: SiteQuality
SIO_000300: 2.309e0

VQSLOD
type: SiteQuality
SIO_000300: 9.320000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.655e0

QD
type: SiteQuality
SIO_000300: 1.346e1

GenotypeQuality
all individuals: 1780
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10242
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8878
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 742
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5024
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.403688524590164e-5
allele num: 15616
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.454e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.2e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.2e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.451e0

DP
type: SiteQuality
SIO_000300: 1.268645e6

VQSLOD
type: SiteQuality
SIO_000300: 7.14e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

FS
type: SiteQuality
SIO_000300: 2.054e0

MQRankSum
type: SiteQuality
SIO_000300: -5.75e-1

GenotypeQuality
all individuals: 34991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4013
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 640
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.752291788570315e-5
allele num: 10254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 740
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.798789815412857e-5
allele num: 58834
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5000
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15624
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.725e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.274746e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

QD
type: SiteQuality
SIO_000300: 1.242e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

MQRankSum
type: SiteQuality
SIO_000300: 5.96e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.5e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

GenotypeQuality
all individuals: 1629
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 2.5e0
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GenotypeQuality
all individuals: 508
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1154
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 237
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GenotypeQuality
all individuals: 780
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variant carriers: 6

GenotypeQuality
all individuals: 228
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variant carriers: 0

GenotypeQuality
all individuals: 4230
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5098
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10386
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.014164497481492e-4
allele num: 59162
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.286198e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.91e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.68e0

QD
type: SiteQuality
SIO_000300: 1.057e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.9e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 3.75e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

GenotypeQuality
all individuals: 730
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1285
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 377
bin: 4.25e1
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GenotypeQuality
all individuals: 764
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1211
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 5.75e1
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GenotypeQuality
all individuals: 259
bin: 8.75e1
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GenotypeQuality
all individuals: 39514
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4583
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 608
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5438
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.289308176100629e-5
allele num: 15900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9120
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8120
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.441e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.19e0

QD
type: SiteQuality
SIO_000300: 1.016e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.63e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.43e-1

DP
type: SiteQuality
SIO_000300: 1.332852e6

MQRankSum
type: SiteQuality
SIO_000300: 6.900000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.81e-1

MQ
type: SiteQuality
SIO_000300: 5.945e1

GenotypeQuality
all individuals: 792
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 739
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1180
bin: 2.75e1
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GenotypeQuality
all individuals: 169
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 767
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 719
bin: 7.5e0
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GenotypeQuality
all individuals: 5470
bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 1289
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GenotypeQuality
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GenotypeQuality
all individuals: 1213
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40003
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.648804616652927e-5
allele num: 60650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9148
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15916
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 772
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10728
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.89e1

VQSLOD
type: SiteQuality
SIO_000300: -1.897e0

DP
type: SiteQuality
SIO_000300: 1.337766e6

MQRankSum
type: SiteQuality
SIO_000300: 7.29e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.71e-1

QD
type: SiteQuality
SIO_000300: 2.73e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.11e-1

GenotypeQuality
all individuals: 920
bin: 2.75e1
variant carriers: 20

GenotypeQuality
all individuals: 203
bin: 1.75e1
variant carriers: 30

GenotypeQuality
all individuals: 172
bin: 9.25e1
variant carriers: 120

GenotypeQuality
all individuals: 559
bin: 7.75e1
variant carriers: 93

GenotypeQuality
all individuals: 467
bin: 4.75e1
variant carriers: 54

GenotypeQuality
all individuals: 614
bin: 7.5e0
variant carriers: 26

GenotypeQuality
all individuals: 515
bin: 5.25e1
variant carriers: 63

GenotypeQuality
all individuals: 32738
bin: 6.25e1
variant carriers: 83

GenotypeQuality
all individuals: 135
bin: 8.75e1
variant carriers: 86

GenotypeQuality
all individuals: 188
bin: 1.25e1
variant carriers: 21

GenotypeQuality
all individuals: 301
bin: 8.25e1
variant carriers: 103

GenotypeQuality
all individuals: 643
bin: 3.75e1
variant carriers: 38

GenotypeQuality
all individuals: 674
bin: 7.25e1
variant carriers: 59

GenotypeQuality
all individuals: 2906
bin: 6.75e1
variant carriers: 80

GenotypeQuality
all individuals: 13365
bin: 9.75e1
variant carriers: 13287

African
type: Population
allele count: 440
allele frequency: 4.793028322440087e-2
allele num: 9180
num of homozygotes: 20

East Asian
type: Population
allele count: 2
allele frequency: 2.455795677799607e-4
allele num: 8144
num of homozygotes: 0

South Asian
type: Population
allele count: 2471
allele frequency: 1.538796861377507e-1
allele num: 16058
num of homozygotes: 184

European (Non-Finnish)
type: Population
allele count: 10699
allele frequency: 1.741657170763471e-1
allele num: 61430
num of homozygotes: 887

Other
type: Population
allele count: 109
allele frequency: 1.404639175257732e-1
allele num: 776
num of homozygotes: 12

Latino
type: Population
allele count: 693
allele frequency: 6.416666666666666e-2
allele num: 10800
num of homozygotes: 30

European (Finnish)
type: Population
allele count: 768
allele frequency: 1.378320172290022e-1
allele num: 5572
num of homozygotes: 52

VQSLOD
type: SiteQuality
SIO_000300: 5.27e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.18e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.9e-2

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.43e-1

QD
type: SiteQuality
SIO_000300: 1.581e1

MQRankSum
type: SiteQuality
SIO_000300: 5.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

DP
type: SiteQuality
SIO_000300: 1.5148e6

GenotypeQuality
all individuals: 4801
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 649
bin: 7.5e0
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GenotypeQuality
all individuals: 760
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 999
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1060
bin: 3.25e1
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GenotypeQuality
all individuals: 705
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.5e0
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GenotypeQuality
all individuals: 210
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4373
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1040
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 9.75e1
variant carriers: 6

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16074
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.841620626151013e-4
allele num: 10860
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.459322417078448e-5
allele num: 61926
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 794
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

MQRankSum
type: SiteQuality
SIO_000300: 3.87e-1

DP
type: SiteQuality
SIO_000300: 1.378022e6

VQSLOD
type: SiteQuality
SIO_000300: 1.78e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.68e-1

QD
type: SiteQuality
SIO_000300: 1.442e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.5e-2

FS
type: SiteQuality
SIO_000300: 5.89e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.19e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.200396825396825e-5
allele num: 16128
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.133105802047782e-4
allele num: 9376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11028
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.200409652435512e-5
allele num: 62492
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5920
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.827419744146754e-4
allele num: 8286
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.96e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

DP
type: SiteQuality
SIO_000300: 1.401875e6

MQRankSum
type: SiteQuality
SIO_000300: 2.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.188e0

QD
type: SiteQuality
SIO_000300: 1.467e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 1.62e0

FS
type: SiteQuality
SIO_000300: 2.721e0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.025270758122743e-5
allele num: 11080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62696
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.407014e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.45e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.124e1

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.81e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.187353050365054e-5
allele num: 16162
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62696
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9428
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11080
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8302
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.04e-1

DP
type: SiteQuality
SIO_000300: 1.407014e6

MQRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.1e-3

BaseQRankSum
type: SiteQuality
SIO_000300: 7.81e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.86e0

QD
type: SiteQuality
SIO_000300: 1.124e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.45e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 24

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 204
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11098
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.666111296234589e-4
allele num: 6002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 23
allele frequency: 3.668378576669112e-4
allele num: 62698
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

DP
type: SiteQuality
SIO_000300: 1.412314e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

QD
type: SiteQuality
SIO_000300: 1.542e1

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

MQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

MQ
type: SiteQuality
SIO_000300: 5.744e1

FS
type: SiteQuality
SIO_000300: 5.618e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62698
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11098
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

BaseQRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.744e1

FS
type: SiteQuality
SIO_000300: 5.618e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

DP
type: SiteQuality
SIO_000300: 1.412314e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.59494720724744e-5
allele num: 62698
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 9.010632546404758e-5
allele num: 11098
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8304
num of homozygotes: 0

South Asian
type: Population
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allele frequency: 0.0e0
allele num: 16150
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6002
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9426
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.88e0

FS
type: SiteQuality
SIO_000300: 5.618e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

DP
type: SiteQuality
SIO_000300: 1.412314e6

QD
type: SiteQuality
SIO_000300: 1.542e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.0e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.35e-1

MQ
type: SiteQuality
SIO_000300: 5.744e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.9e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62624
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11106
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8298
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African
type: Population
allele count: 1
allele frequency: 1.060445387062566e-4
allele num: 9430
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 5972
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.1085e1

BaseQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 2.75e1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 2.05e-1

DP
type: SiteQuality
SIO_000300: 1.416645e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.03e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8352
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6102
num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.585137748470342e-5
allele num: 63086
num of homozygotes: 0

Latino
type: Population
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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QD
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MQRankSum
type: SiteQuality
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ClippingRankSum
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DP
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FS
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InbreedingCoeff
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SIO_000300: 1.1e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.188e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.598e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.581327682722414e-5
allele num: 63238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16226
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9548
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11198
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6108
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.838e0

QD
type: SiteQuality
SIO_000300: 1.161e1

VQSLOD
type: SiteQuality
SIO_000300: -1.908e0

MQ
type: SiteQuality
SIO_000300: 5.897e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.9e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.868e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.323e0

FS
type: SiteQuality
SIO_000300: 3.074e0

DP
type: SiteQuality
SIO_000300: 1.425203e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.78e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9564
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8374
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.784758165268606e-4
allele num: 11206
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.578631642092634e-5
allele num: 63346
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.897e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

QD
type: SiteQuality
SIO_000300: 1.343e1

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

DP
type: SiteQuality
SIO_000300: 1.429155e6

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63346
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9564
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.194172438500119e-4
allele num: 8374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11206
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.9e-1

DP
type: SiteQuality
SIO_000300: 1.429155e6

MQRankSum
type: SiteQuality
SIO_000300: -1.4e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.956e1

VQSLOD
type: SiteQuality
SIO_000300: 3.07e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.897e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.1e-1

QD
type: SiteQuality
SIO_000300: 1.343e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 206
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11254
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63634
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.228501228501228e-4
allele num: 16280
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.448e1

VQSLOD
type: SiteQuality
SIO_000300: 8.78e-1

FS
type: SiteQuality
SIO_000300: 2.04e0

DP
type: SiteQuality
SIO_000300: 1.436721e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.329e0

MQRankSum
type: SiteQuality
SIO_000300: 8.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.07e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.942e1

GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1111
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6282
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8436
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.128953174797744e-5
allele num: 16316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.131850923896023e-5
allele num: 63860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11318
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.954e1

MQRankSum
type: SiteQuality
SIO_000300: 7.8e-1

FS
type: SiteQuality
SIO_000300: 1.587e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.817e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.659e0

QD
type: SiteQuality
SIO_000300: 2.764e1

DP
type: SiteQuality
SIO_000300: 1.446148e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.33e-1

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 846
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.186239620403321e-4
allele num: 8430
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.224889759921607e-4
allele num: 16328
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.025641025641026e-4
allele num: 9750
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.953e1

QD
type: SiteQuality
SIO_000300: 1.227e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 6.26e-1

FS
type: SiteQuality
SIO_000300: 1.55e0

VQSLOD
type: SiteQuality
SIO_000300: 2.01e0

DP
type: SiteQuality
SIO_000300: 1.44787e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.97e-1

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.366863905325444e-4
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16340
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11344
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6318
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64012
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.78e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.62e-1

QD
type: SiteQuality
SIO_000300: 1.609e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.449412e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

VQSLOD
type: SiteQuality
SIO_000300: -4.205e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 3.111871790882215e-5
allele num: 64270
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
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ReadPosRankSum
type: SiteQuality
SIO_000300: -3.49e-1

DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.95e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.09e-1

BaseQRankSum
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SIO_000300: -2.3e0

FS
type: SiteQuality
SIO_000300: 9.648999999999999e0

ClippingRankSum
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SIO_000300: 1.75e-1

GenotypeQuality
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variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 374
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GenotypeQuality
all individuals: 158
bin: 4.25e1
variant carriers: 2

GenotypeQuality
all individuals: 375
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 46604
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 145
bin: 5.75e1
variant carriers: 4

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8478
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 172
allele frequency: 2.693391794550579e-2
allele num: 6386
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 2005
allele frequency: 3.115095394941271e-2
allele num: 64364
num of homozygotes: 29

African
type: Population
allele count: 58
allele frequency: 5.881160008111945e-3
allele num: 9862
num of homozygotes: 0

Other
type: Population
allele count: 28
allele frequency: 3.263403263403263e-2
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 212
allele frequency: 1.293629484989016e-2
allele num: 16388
num of homozygotes: 2

Latino
type: Population
allele count: 74
allele frequency: 6.503779223062049e-3
allele num: 11378
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.967e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.03e0

DP
type: SiteQuality
SIO_000300: 1.523861e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.91e-1

QD
type: SiteQuality
SIO_000300: 1.437e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

VQSLOD
type: SiteQuality
SIO_000300: 6.31e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.83e-1

GenotypeQuality
all individuals: 358
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1636
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48742
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 243
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 369
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 452
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 140
bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.550628004341758e-5
allele num: 64490
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11398
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6420
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.534e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

MQ
type: SiteQuality
SIO_000300: 5.904e1

QD
type: SiteQuality
SIO_000300: 1.107e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.9e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.87e-2

DP
type: SiteQuality
SIO_000300: 1.466835e6

FS
type: SiteQuality
SIO_000300: 1.289e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.07e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.98e-1

GenotypeQuality
all individuals: 192
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 845
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 316
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 93
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1494
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1084
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49152
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6446
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.761170492377782e-5
allele num: 11414
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9924
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64634
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

MQ
type: SiteQuality
SIO_000300: 5.964e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

DP
type: SiteQuality
SIO_000300: 1.471549e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.203e0

MQRankSum
type: SiteQuality
SIO_000300: 9.94e-1

QD
type: SiteQuality
SIO_000300: 1.368e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.89e0

VQSLOD
type: SiteQuality
SIO_000300: -1.335e0

GenotypeQuality
all individuals: 451
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5148
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 438
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 163
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 49227
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6460
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16430
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11430
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9936
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.545642832854184e-5
allele num: 64698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8518
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.91e-1

FS
type: SiteQuality
SIO_000300: 1.248e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.57e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.623e0

DP
type: SiteQuality
SIO_000300: 1.473091e6

VQSLOD
type: SiteQuality
SIO_000300: -6.778999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.03e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.382e1

GenotypeQuality
all individuals: 5143
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 286
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 92
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1388
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 296
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 849
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.173158141717503e-4
allele num: 8524
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16434
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9954
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.38e-1

QD
type: SiteQuality
SIO_000300: 1.451e1

MQRankSum
type: SiteQuality
SIO_000300: 5.15e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.04e-1

FS
type: SiteQuality
SIO_000300: 5.629e0

MQ
type: SiteQuality
SIO_000300: 5.923e1

DP
type: SiteQuality
SIO_000300: 1.474772e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.03e-1

GenotypeQuality
all individuals: 70
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49187
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1351
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 297
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 175
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 281
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 201
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1083
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 450
bin: 9.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9956
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6474
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64744
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11440
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.517823639774859e-4
allele num: 8528
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

DP
type: SiteQuality
SIO_000300: 1.476543e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.645e0

QD
type: SiteQuality
SIO_000300: 1.259e1

FS
type: SiteQuality
SIO_000300: 2.884e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.5e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.84e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.78e-1

GenotypeQuality
all individuals: 134
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49477
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1338
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 116
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5175
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1089
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 436
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542686125080991e-5
allele num: 64822
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11444
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9972
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 870
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQ
type: SiteQuality
SIO_000300: 5.923e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.653999999999999e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

DP
type: SiteQuality
SIO_000300: 1.477231e6

QD
type: SiteQuality
SIO_000300: 9.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.06e0

GenotypeQuality
all individuals: 5152
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 144
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 49411
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 178
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 432
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1282
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.084896347482724e-5
allele num: 64832
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16440
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.05e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.617e0

VQSLOD
type: SiteQuality
SIO_000300: -2.694e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

MQRankSum
type: SiteQuality
SIO_000300: -1.604e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.21e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.66e-1

DP
type: SiteQuality
SIO_000300: 1.478597e6

QD
type: SiteQuality
SIO_000300: 1.127e1

MQ
type: SiteQuality
SIO_000300: 5.977e1

GenotypeQuality
all individuals: 431
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 474
bin: 9.75e1
variant carriers: 27

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 245
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 840
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1271
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9998
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11452
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.621926418931411e-5
allele num: 64908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

East Asian
type: Population
allele count: 24
allele frequency: 2.812280290602297e-3
allele num: 8534
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -4.7e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.1e0

MQRankSum
type: SiteQuality
SIO_000300: 3.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.52e-1

QD
type: SiteQuality
SIO_000300: 1.319e1

FS
type: SiteQuality
SIO_000300: 2.018e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.5e-1

DP
type: SiteQuality
SIO_000300: 1.481224e6

MQ
type: SiteQuality
SIO_000300: 5.956e1

GenotypeQuality
all individuals: 239
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 2.5e0
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1102
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 9.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5222
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10066
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.710801393728223e-5
allele num: 11480
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.071645415907711e-5
allele num: 16470
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.537326282130119e-5
allele num: 65048
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.09e0

FS
type: SiteQuality
SIO_000300: 2.782e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.18e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

QD
type: SiteQuality
SIO_000300: 1.177e1

DP
type: SiteQuality
SIO_000300: 1.484573e6

GenotypeQuality
all individuals: 161
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 425
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.062787136294027e-5
allele num: 65300
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.490437e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 7.55e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.409e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.22e0

MQRankSum
type: SiteQuality
SIO_000300: -2.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

GenotypeQuality
all individuals: 5279
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
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variant carriers: 0

GenotypeQuality
all individuals: 46
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.686587908269631e-5
allele num: 11512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.647e0

MQRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.54e-1

QD
type: SiteQuality
SIO_000300: 9.800000000000001e0

MQ
type: SiteQuality
SIO_000300: 5.94e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.43e-1

DP
type: SiteQuality
SIO_000300: 1.490977e6

FS
type: SiteQuality
SIO_000300: 1.2376e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

GenotypeQuality
all individuals: 192
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
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variant carriers: 0

GenotypeQuality
all individuals: 427
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variant carriers: 0

GenotypeQuality
all individuals: 50419
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 160
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 157
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.033060357901122e-4
allele num: 6594
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65328
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 4.767e0

MQ
type: SiteQuality
SIO_000300: 5.947e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.49e0

QD
type: SiteQuality
SIO_000300: 9.99e0

MQRankSum
type: SiteQuality
SIO_000300: -2.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e-1

DP
type: SiteQuality
SIO_000300: 1.490999e6

GenotypeQuality
all individuals: 22
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 158
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 446
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variant carriers: 1

GenotypeQuality
all individuals: 1127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 197
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29
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GenotypeQuality
all individuals: 50399
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 5280
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 159
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variant carriers: 0

GenotypeQuality
all individuals: 82
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 838
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.53003457878148e-5
allele num: 65358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8574
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -9.445e-1

DP
type: SiteQuality
SIO_000300: 1.491553e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

FS
type: SiteQuality
SIO_000300: 2.724e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.41e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.41e-1

MQ
type: SiteQuality
SIO_000300: 5.919e1

MQRankSum
type: SiteQuality
SIO_000300: 8.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.004e0

QD
type: SiteQuality
SIO_000300: 7.03e0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 9.75e1
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GenotypeQuality
all individuals: 1127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 8.25e1
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GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.75e1
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GenotypeQuality
all individuals: 158
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GenotypeQuality
all individuals: 52
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GenotypeQuality
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GenotypeQuality
all individuals: 5278
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50510
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 842
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.528350909368791e-5
allele num: 65430
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.165e1

MQ
type: SiteQuality
SIO_000300: 5.93e1

FS
type: SiteQuality
SIO_000300: 8.106e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.907e0

MQRankSum
type: SiteQuality
SIO_000300: -1.75e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.767e-1

DP
type: SiteQuality
SIO_000300: 1.493186e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

GenotypeQuality
all individuals: 75
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 54
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 25
bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50567
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.220814893941706e-4
allele num: 65530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.819324430479184e-5
allele num: 10184
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.423654871546292e-4
allele num: 16504
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.023e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.976e1

DP
type: SiteQuality
SIO_000300: 1.49511e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.5e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.4e-2

QD
type: SiteQuality
SIO_000300: 1.277e1

VQSLOD
type: SiteQuality
SIO_000300: 2.07e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.209e0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.944062806673209e-4
allele num: 10190
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65522
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.018e0

FS
type: SiteQuality
SIO_000300: 1.5749e1

DP
type: SiteQuality
SIO_000300: 1.494976e6

QD
type: SiteQuality
SIO_000300: 1.342e1

MQ
type: SiteQuality
SIO_000300: 5.979e1

MQRankSum
type: SiteQuality
SIO_000300: 7.78e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 5.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.52e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 186
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GenotypeQuality
all individuals: 25
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GenotypeQuality
all individuals: 84
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211827435773146e-4
allele num: 16504
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65538
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.815469179426777e-5
allele num: 10188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.495135e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.2e-2

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 9.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.18e0

QD
type: SiteQuality
SIO_000300: 1.215e1

BaseQRankSum
type: SiteQuality
SIO_000300: -8.6e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.63e0

GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11528
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.800078400627205e-5
allele num: 10204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65608
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.059871530723549e-5
allele num: 16502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.55e-1

DP
type: SiteQuality
SIO_000300: 1.496324e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.02e-1

FS
type: SiteQuality
SIO_000300: 1.101e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.74e-1

QD
type: SiteQuality
SIO_000300: 1.165e1

MQ
type: SiteQuality
SIO_000300: 5.978e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 12
allele frequency: 1.828766496997775e-4
allele num: 65618
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.673026886383348e-5
allele num: 11530
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
SIO_000300: 2.25e0

FS
type: SiteQuality
SIO_000300: 1.789e0

DP
type: SiteQuality
SIO_000300: 1.497165e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

QD
type: SiteQuality
SIO_000300: 1.047e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.19e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.1e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.537e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11530
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523693432881304e-5
allele num: 65630
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.04e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.04e-1

FS
type: SiteQuality
SIO_000300: 2.35e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 1.49675e6

QD
type: SiteQuality
SIO_000300: 1.187e1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.567183265840514e-5
allele num: 65686
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.603714632876237e-4
allele num: 11522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.497552e6

MQ
type: SiteQuality
SIO_000300: 5.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.05e-1

FS
type: SiteQuality
SIO_000300: 5.23e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.8e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

QD
type: SiteQuality
SIO_000300: 1.295e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.14e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65690
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.52e-1

ReadPosRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

BaseQRankSum
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SIO_000300: 1.24e0

MQ
type: SiteQuality
SIO_000300: 5.957e1

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 1.497539e6

QD
type: SiteQuality
SIO_000300: 1.262e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8586
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65690
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.06060606060606e-5
allele num: 16500
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.957e1

DP
type: SiteQuality
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QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164958061509786e-4
allele num: 8584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 65690
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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South Asian
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ClippingRankSum
type: SiteQuality
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FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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InbreedingCoeff
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MQ
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

East Asian
type: Population
allele count: 5
allele frequency: 5.827505827505828e-4
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.522348069662648e-5
allele num: 65688
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.676036786395974e-5
allele num: 11526
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.85e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.9e-1

DP
type: SiteQuality
SIO_000300: 1.497729e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.3e-1

FS
type: SiteQuality
SIO_000300: 1.746e0

QD
type: SiteQuality
SIO_000300: 1.209e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

VQSLOD
type: SiteQuality
SIO_000300: 1.6e0

GenotypeQuality
all individuals: 149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1129
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50819
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 677
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 828
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 451
bin: 9.75e1
variant carriers: 15

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.748251748251748e-3
allele num: 8580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65708
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.97e1

QD
type: SiteQuality
SIO_000300: 1.103e1

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.52e-1

DP
type: SiteQuality
SIO_000300: 1.498168e6

FS
type: SiteQuality
SIO_000300: 5.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.15e-1

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 681
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 437
bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 1.817961459217065e-4
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8580
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521699433927811e-5
allele num: 65716
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.285e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

FS
type: SiteQuality
SIO_000300: 8.179999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.02e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.98e-1

QD
type: SiteQuality
SIO_000300: 1.25e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.1e-1

DP
type: SiteQuality
SIO_000300: 1.497736e6

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5290
bin: 6.75e1
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GenotypeQuality
all individuals: 123
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 667
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variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 50774
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1139
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variant carriers: 0

GenotypeQuality
all individuals: 417
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variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 154
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 176
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521606816798539e-5
allele num: 65720
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.945e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 1.49756e6

QD
type: SiteQuality
SIO_000300: 1.366e1

MQRankSum
type: SiteQuality
SIO_000300: -5.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.15e-1

FS
type: SiteQuality
SIO_000300: 2.099e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.53e-1

GenotypeQuality
all individuals: 49
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 664
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 433
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 124
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 827
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 149
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5287
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521606816798539e-5
allele num: 65720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.784735812133073e-5
allele num: 10220
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.928e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.82e-1

DP
type: SiteQuality
SIO_000300: 1.497654e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

MQRankSum
type: SiteQuality
SIO_000300: 7.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

QD
type: SiteQuality
SIO_000300: 1.457e1

FS
type: SiteQuality
SIO_000300: 4.982e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.57e-1

GenotypeQuality
all individuals: 19
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5286
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 824
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variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50796
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1137
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 413
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8584
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521792062332603e-5
allele num: 65712
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.07e-1

FS
type: SiteQuality
SIO_000300: 4.235e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.911e0

QD
type: SiteQuality
SIO_000300: 9.369999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -1.88e-1

DP
type: SiteQuality
SIO_000300: 1.497709e6

MQ
type: SiteQuality
SIO_000300: 6.0e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.594e0

GenotypeQuality
all individuals: 663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 83
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variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 8.75e1
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GenotypeQuality
all individuals: 50811
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5289
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 416
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 822
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.328830926874709e-4
allele num: 8588
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.0e-4

FS
type: SiteQuality
SIO_000300: 3.636e0

MQ
type: SiteQuality
SIO_000300: 5.945e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.163e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.23e-1

QD
type: SiteQuality
SIO_000300: 1.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.21e-1

DP
type: SiteQuality
SIO_000300: 1.497911e6

GenotypeQuality
all individuals: 41
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 408
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50657
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 7.5e0
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GenotypeQuality
all individuals: 84
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variant carriers: 0

GenotypeQuality
all individuals: 87
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GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
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GenotypeQuality
all individuals: 1116
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GenotypeQuality
all individuals: 806
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variant carriers: 0

GenotypeQuality
all individuals: 146
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GenotypeQuality
all individuals: 22
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 9.75e1
variant carriers: 204

Latino
type: Population
allele count: 10
allele frequency: 8.680555555555555e-4
allele num: 11520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 90
allele frequency: 5.453884377651194e-3
allele num: 16502
num of homozygotes: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 104
allele frequency: 1.582519248912018e-3
allele num: 65718
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.98e-1

FS
type: SiteQuality
SIO_000300: 1.091e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.76e-2

QD
type: SiteQuality
SIO_000300: 1.411e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.45e0

DP
type: SiteQuality
SIO_000300: 1.510662e6

MQ
type: SiteQuality
SIO_000300: 5.969e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.73e0

GenotypeQuality
all individuals: 122
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
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GenotypeQuality
all individuals: 1126
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GenotypeQuality
all individuals: 121
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GenotypeQuality
all individuals: 62
bin: 4.75e1
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GenotypeQuality
all individuals: 818
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GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 58
bin: 4.25e1
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GenotypeQuality
all individuals: 411
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GenotypeQuality
all individuals: 149
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GenotypeQuality
all individuals: 423
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 672
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65738
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.773260359655981e-5
allele num: 10232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.498273e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

MQRankSum
type: SiteQuality
SIO_000300: -7.15e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

VQSLOD
type: SiteQuality
SIO_000300: 6.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e0

QD
type: SiteQuality
SIO_000300: 1.188e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.038e0

FS
type: SiteQuality
SIO_000300: 3.972e0

MQ
type: SiteQuality
SIO_000300: 5.953e1

GenotypeQuality
all individuals: 149
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 78
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1126
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 678
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50908
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5286
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16500
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164144353899884e-4
allele num: 8590
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.327e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.68e0

FS
type: SiteQuality
SIO_000300: 1.503e0

VQSLOD
type: SiteQuality
SIO_000300: -2.038e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.443e0

MQ
type: SiteQuality
SIO_000300: 5.984e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.796e0

MQRankSum
type: SiteQuality
SIO_000300: -1.478e0

DP
type: SiteQuality
SIO_000300: 1.498495e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.4e-3

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 817
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5282
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 150
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1130
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 77
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.521097624045511e-5
allele num: 65742
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

QD
type: SiteQuality
SIO_000300: 1.298e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.7e-1

DP
type: SiteQuality
SIO_000300: 1.498389e6

FS
type: SiteQuality
SIO_000300: 7.68e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.28e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.85e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.080000000000001e-1