10-51829387-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829387
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829387
    reference: chr 10
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.207T>G
  hgvsp: ENSP00000282633.5:p.Ile69Met
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.207T>G
  hgvsp: ENSP00000314417.7:p.Ile69Met
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.207T>G
  hgvsp: ENSP00000344037.6:p.Ile69Met
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.118T>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.207T>G
  hgvsp: ENSP00000403781.2:p.Ile69Met
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36977
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11025
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
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genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
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genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
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genotype depth: GenotypeDepth
  all individuals: 144
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6788
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36815
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 9.25e1
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Ile69Met
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: VQSLOD

10-51829388-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829388
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829388
    reference: chr 10
allele count: 4
allele frequency: 3.312190517198549e-5
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.208C>T
  hgvsp: ENSP00000314417.7:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.208C>T
  hgvsp: ENSP00000344037.6:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.208C>T
  hgvsp: ENSP00000403781.2:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.119C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.208C>T
  hgvsp: ENSP00000282633.5:p.Arg70Trp
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36975
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
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  variant carriers: 4
genotype quality: GenotypeQuality
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  bin: 6.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5928
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  variant carriers: 4
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 36813
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genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg70Trp
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

10-51829410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829410
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829410
    reference: chr 10
allele count: 1
allele frequency: 8.280476292996373e-6
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.230G>A
  hgvsp: ENSP00000282633.5:p.Cys77Tyr
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.230G>A
  hgvsp: ENSP00000314417.7:p.Cys77Tyr
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.230G>A
  hgvsp: ENSP00000344037.6:p.Cys77Tyr
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.141G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.230G>A
  hgvsp: ENSP00000403781.2:p.Cys77Tyr
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5854
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
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  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 2.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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  bin: 8.25e1
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genotype depth: GenotypeDepth
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genotype depth: GenotypeDepth
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 6787
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Cys77Tyr
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD

10-51829412-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829412
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829412
    reference: chr 10
allele count: 2
allele frequency: 1.656095258599275e-5
allele num: 120766
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.232C>T
  hgvsp: ENSP00000403781.2:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.232C>T
  hgvsp: ENSP00000282633.5:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.143C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.232C>T
  hgvsp: ENSP00000314417.7:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.232C>T
  hgvsp: ENSP00000344037.6:p.Arg78Cys
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11020
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
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  variant carriers: 2
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 8.75e1
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6786
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg78Cys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

10-51829413-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829413
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829413
    reference: chr 10
allele count: 19
allele frequency: 1.573290495669311e-4
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.233G>A
  hgvsp: ENSP00000344037.6:p.Arg78His
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.233G>A
  hgvsp: ENSP00000403781.2:p.Arg78His
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.144G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.233G>A
  hgvsp: ENSP00000282633.5:p.Arg78His
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.233G>A
  hgvsp: ENSP00000314417.7:p.Arg78His
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 724
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 687
  bin: 9.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 5852
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11018
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6784
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5948
  bin: 9.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36798
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Arg78His
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

10-51829421-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829421
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829421
    reference: chr 10
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.241A>G
  hgvsp: ENSP00000314417.7:p.Asn81Asp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.241A>G
  hgvsp: ENSP00000282633.5:p.Asn81Asp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.152A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.241A>G
  hgvsp: ENSP00000344037.6:p.Asn81Asp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.241A>G
  hgvsp: ENSP00000403781.2:p.Asn81Asp
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5855
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 472
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6781
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5943
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Asn81Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
population: African
reference allele: A
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff

10-51829424-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829424
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829424
    reference: chr 10
allele count: 1
allele frequency: 8.280750567231414e-6
allele num: 120762
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.244G>A
  hgvsp: ENSP00000282633.5:p.Val82Ile
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.244G>A
  hgvsp: ENSP00000344037.6:p.Val82Ile
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.155G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.244G>A
  hgvsp: ENSP00000314417.7:p.Val82Ile
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.244G>A
  hgvsp: ENSP00000403781.2:p.Val82Ile
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11017
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5943
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Val82Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff

10-51829431-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829431
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829431
    reference: chr 10
allele count: 8
allele frequency: 6.62471016893011e-5
allele num: 120760
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.251A>G
  hgvsp: ENSP00000282633.5:p.Asn84Ser
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.251A>G
  hgvsp: ENSP00000403781.2:p.Asn84Ser
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.251A>G
  hgvsp: ENSP00000344037.6:p.Asn84Ser
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.162A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.251A>G
  hgvsp: ENSP00000314417.7:p.Asn84Ser
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36946
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2038
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6779
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5951
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36793
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asn84Ser
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum

10-51829434-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829434
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829434
    reference: chr 10
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.254A>G
  hgvsp: ENSP00000403781.2:p.Asp85Gly
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.165A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.254A>G
  hgvsp: ENSP00000344037.6:p.Asp85Gly
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.254A>G
  hgvsp: ENSP00000314417.7:p.Asp85Gly
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.254A>G
  hgvsp: ENSP00000282633.5:p.Asp85Gly
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5856
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36944
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5949
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6780
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Asp85Gly
num of homozygotes: 0
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

10-51829442-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829442
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829442
    reference: chr 10
allele count: 1
allele frequency: 8.280887711162637e-6
allele num: 120760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.262A>G
  hgvsp: ENSP00000403781.2:p.Met88Val
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.262A>G
  hgvsp: ENSP00000282633.5:p.Met88Val
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.173A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.262A>G
  hgvsp: ENSP00000314417.7:p.Met88Val
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.262A>G
  hgvsp: ENSP00000344037.6:p.Met88Val
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2040
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36936
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5949
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6780
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Met88Val
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD

10-51829444-GCTCT-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829444
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829440
    reference: chr 10
allele count: 5
allele frequency: 4.140443855581318e-5
allele num: 120760
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.178_181delCTCT
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.267_270delCTCT
  hgvsp: ENSP00000403781.2:p.Ser90IlefsTer19
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.267_270delCTCT
  hgvsp: ENSP00000344037.6:p.Ser90IlefsTer37
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.267_270delCTCT
  hgvsp: ENSP00000282633.5:p.Ser90IlefsTer37
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.267_270delCTCT
  hgvsp: ENSP00000314417.7:p.Ser90IlefsTer37
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2041
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36932
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5953
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ser90IlefsTer37
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
reference allele: GCTCT
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

10-51829447-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829447
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829447
    reference: chr 10
allele count: 1
allele frequency: 8.281024859636628e-6
allele num: 120758
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.267C>T
  hgvsp: ENST00000282633.5:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.178C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.267C>T
  hgvsp: ENST00000351071.6:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.267C>T
  hgvsp: ENST00000434114.2:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.267C>T
  hgvsp: ENST00000314664.7:c.267C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36927
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11016
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36771
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6779
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu89Leu
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

10-51829450-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829450
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829449
    reference: chr 10
allele count: 2
allele frequency: 1.656259834042764e-5
allele num: 120754
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.183delA
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.272delA
  hgvsp: ENSP00000282633.5:p.Asn91IlefsTer37
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.272delA
  hgvsp: ENSP00000314417.7:p.Asn91IlefsTer37
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.272delA
  hgvsp: ENSP00000344037.6:p.Asn91IlefsTer37
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.272delA
  hgvsp: ENSP00000403781.2:p.Asn91IlefsTer19
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11022
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36914
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5858
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3277
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36762
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5952
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6779
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asn91IlefsTer37
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: TA
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum

10-51829451-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829451
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829451
    reference: chr 10
allele count: 1
allele frequency: 8.281573498964803e-6
allele num: 120750
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.271A>G
  hgvsp: ENSP00000344037.6:p.Asn91Asp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.182A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.271A>G
  hgvsp: ENSP00000314417.7:p.Asn91Asp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.271A>G
  hgvsp: ENSP00000282633.5:p.Asn91Asp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.271A>G
  hgvsp: ENSP00000403781.2:p.Asn91Asp
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36763
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2442
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6780
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn91Asp
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum

10-51829468-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829468
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829468
    reference: chr 10
allele count: 3
allele frequency: 2.485212982752622e-5
allele num: 120714
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.288G>A
  hgvsp: ENST00000282633.5:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.288G>A
  hgvsp: ENST00000351071.6:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.288G>A
  hgvsp: ENST00000434114.2:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.199G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.288G>A
  hgvsp: ENST00000314664.7:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5859
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1117
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 727
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36707
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5955
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu96Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum

10-51829492-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829492
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829492
    reference: chr 10
allele count: 4
allele frequency: 3.323087147960455e-5
allele num: 120370
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.291+21A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.291+21A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.202+21A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.291+21A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.291+21A>G
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36137
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 610
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 117
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2563
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35878
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2435
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3270
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQRankSum

10-51829500-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829500
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829500
    reference: chr 10
allele count: 1
allele frequency: 8.32209850035785e-6
allele num: 120162
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.291+29T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.291+29T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.291+29T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.202+29T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.291+29T>C
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 731
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 669
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10717
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35121
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5810
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1123
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2042
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 171
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1467
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2426
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6695
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34649
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5959
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

10-51829508-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829508
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829508
    reference: chr 10
allele count: 4
allele frequency: 3.33205604518268e-5
allele num: 120046
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.291+37G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.291+37G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.202+37G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.291+37G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.291+37G>A
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2005
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10372
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 735
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1465
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 33887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2423
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2562
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 607
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6636
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33072
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-51829520-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51829520
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51829520
    reference: chr 10
allele count: 17322
allele frequency: 1.452067196459109e-1
allele num: 119292
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.291+49T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.291+49T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.291+49T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.202+49T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.291+49T>C
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27400
  bin: 2.25e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 3.25e1
  variant carriers: 301
genotype depth: GenotypeDepth
  all individuals: 2142
  bin: 9.75e1
  variant carriers: 1800
genotype depth: GenotypeDepth
  all individuals: 1783
  bin: 5.75e1
  variant carriers: 1583
genotype depth: GenotypeDepth
  all individuals: 1627
  bin: 4.75e1
  variant carriers: 1211
genotype depth: GenotypeDepth
  all individuals: 527
  bin: 8.75e1
  variant carriers: 456
genotype depth: GenotypeDepth
  all individuals: 1767
  bin: 5.25e1
  variant carriers: 1508
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 7.5e0
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 4.25e1
  variant carriers: 951
genotype depth: GenotypeDepth
  all individuals: 2007
  bin: 1.75e1
  variant carriers: 490
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 8.25e1
  variant carriers: 706
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 3.75e1
  variant carriers: 502
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 7.25e1
  variant carriers: 1184
genotype depth: GenotypeDepth
  all individuals: 1547
  bin: 6.75e1
  variant carriers: 1412
genotype depth: GenotypeDepth
  all individuals: 7177
  bin: 2.75e1
  variant carriers: 200
genotype depth: GenotypeDepth
  all individuals: 1926
  bin: 1.25e1
  variant carriers: 364
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 9.25e1
  variant carriers: 345
genotype depth: GenotypeDepth
  all individuals: 1020
  bin: 7.75e1
  variant carriers: 928
genotype depth: GenotypeDepth
  all individuals: 1738
  bin: 6.25e1
  variant carriers: 1606
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 5.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 1627
  bin: 7.25e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 1375
  bin: 2.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 4.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 764
  bin: 9.25e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 1483
  bin: 8.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 25926
  bin: 6.25e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 896
  bin: 3.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 18511
  bin: 9.75e1
  variant carriers: 15634
genotype quality: GenotypeQuality
  all individuals: 545
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4719
  bin: 6.75e1
  variant carriers: 19
num of homozygotes: 1500
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: MQ

10-51838441-TATG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51838441
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51838438
    reference: chr 10
allele count: 1
allele frequency: 3.351206434316354e-4
allele num: 2984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.303_305delTGA
  hgvsp: ENSP00000344037.6:p.Asp101del
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.303_305delTGA
  hgvsp: ENSP00000403781.2:p.Asp101del
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.214_216delTGA
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.303_305delTGA
  hgvsp: ENSP00000282633.5:p.Asp101del
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.39_41delTGA
  hgvsp: ENSP00000382277.2:p.Asp13del
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.303_305delTGA
  hgvsp: ENSP00000314417.7:p.Asp101del
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: inframe deletion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2206
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp101del
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
reference allele: TATG
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

10-51838445-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51838445
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51838445
    reference: chr 10
allele count: 2
allele frequency: 6.978367062107466e-4
allele num: 2866
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.302A>G
  hgvsp: ENSP00000344037.6:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.302A>G
  hgvsp: ENSP00000282633.5:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.213A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.38A>G
  hgvsp: ENSP00000382277.2:p.Asp13Gly
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.302A>G
  hgvsp: ENSP00000314417.7:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.302A>G
  hgvsp: ENSP00000403781.2:p.Asp101Gly
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2376
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asp101Gly
num of homozygotes: 1
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: DP

10-51843781-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51843781
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51843781
    reference: chr 10
allele count: 5381
allele frequency: 4.385493072534637e-1
allele num: 12270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.440-1476G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.529-51G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.529-51G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.529-51G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.310-1476G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.265-51G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000476514
  gene symbol: FAM21A
  hgvsc: ENST00000476514.1:n.57-51G>A
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.25e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 9.75e1
  variant carriers: 529
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 1.75e1
  variant carriers: 431
genotype depth: GenotypeDepth
  all individuals: 7394
  bin: 2.5e0
  variant carriers: 3186
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 2.25e1
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 14926
  bin: 7.5e0
  variant carriers: 6822
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 5.75e1
  variant carriers: 49
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 7.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 6.25e1
  variant carriers: 38
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 1.25e1
  variant carriers: 2210
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 2.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 6.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.75e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 3.75e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.25e1
  variant carriers: 54
genotype quality: GenotypeQuality
  all individuals: 1434
  bin: 2.5e0
  variant carriers: 162
genotype quality: GenotypeQuality
  all individuals: 2491
  bin: 1.75e1
  variant carriers: 2253
genotype quality: GenotypeQuality
  all individuals: 1878
  bin: 2.25e1
  variant carriers: 1288
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 239
genotype quality: GenotypeQuality
  all individuals: 1711
  bin: 9.75e1
  variant carriers: 1708
genotype quality: GenotypeQuality
  all individuals: 781
  bin: 6.75e1
  variant carriers: 383
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 3.75e1
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 4.75e1
  variant carriers: 286
genotype quality: GenotypeQuality
  all individuals: 855
  bin: 3.25e1
  variant carriers: 837
genotype quality: GenotypeQuality
  all individuals: 2722
  bin: 1.25e1
  variant carriers: 1912
num of homozygotes: 1451
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: QD

10-51843782-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51843782
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51843782
    reference: chr 10
allele count: 1
allele frequency: 1.450536698578474e-4
allele num: 6894
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000476514
  gene symbol: FAM21A
  hgvsc: ENST00000476514.1:n.57-50T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.529-50T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.440-1475T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.529-50T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.310-1475T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.265-50T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.529-50T>C
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4964
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3292
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11530
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 663
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 207
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

10-51843815-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51843815
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51843815
    reference: chr 10
allele count: 1
allele frequency: 5.0e-1
allele num: 2
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.529-17C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.529-17C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.310-1442C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.265-17C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.440-1442C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.529-17C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000476514
  gene symbol: FAM21A
  hgvsc: ENST00000476514.1:n.57-17C>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: QD

10-51843889-CAAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51843889
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51843886
    reference: chr 10
allele count: 0
allele frequency: NaN
allele num: 0
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000476514
  gene symbol: FAM21A
  hgvsc: ENST00000476514.1:n.119_121delAGA
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.591_593delAGA
  hgvsp: ENSP00000314417.7:p.Glu197del
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.327_329delAGA
  hgvsp: ENSP00000382277.2:p.Glu109del
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.310-1363_310-1361delAGA
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.591_593delAGA
  hgvsp: ENSP00000344037.6:p.Glu197del
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.591_593delAGA
  hgvsp: ENSP00000282633.5:p.Glu197del
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.440-1363_440-1361delAGA
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: inframe deletion
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Glu197del
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: CAAG
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: QD

10-51845274-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51845274
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51845274
    reference: chr 10
allele count: 3
allele frequency: 1.971090670170828e-3
allele num: 1522
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.640G>C
  hgvsp: ENSP00000344037.6:p.Asp214His
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.457G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000476514
  gene symbol: FAM21A
  hgvsc: ENST00000476514.1:n.168G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.640G>C
  hgvsp: ENSP00000282633.5:p.Asp214His
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.640G>C
  hgvsp: ENSP00000314417.7:p.Asp214His
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.376G>C
  hgvsp: ENSP00000382277.2:p.Asp126His
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*6G>C
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4393
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 6.25e1
  variant carriers: 1
hgvs: p.Asp214His
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: QD

10-51846998-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51846998
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51846998
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 5450
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.685-37G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.421-37G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*51-37G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.685-37G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.685-37G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.502-37G>C
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6698
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29771
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 787
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 344
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23359
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5236
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4490
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: MQ

10-51847045-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51847045
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51847045
    reference: chr 10
allele count: 11
allele frequency: 1.115618661257606e-3
allele num: 9860
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.512A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.431A>G
  hgvsp: ENSP00000382277.2:p.Glu144Gly
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*61A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.695A>G
  hgvsp: ENSP00000344037.6:p.Glu232Gly
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.695A>G
  hgvsp: ENSP00000282633.5:p.Glu232Gly
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.695A>G
  hgvsp: ENSP00000314417.7:p.Glu232Gly
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20436
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 511
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21817
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2422
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1259
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21493
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1098
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 1.25e1
  variant carriers: 1
hgvs: p.Glu232Gly
num of homozygotes: 1
population: East Asian
population: Latino
population: Other
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum

10-51847067-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51847067
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51847067
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 10394
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*83C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.717C>T
  hgvsp: ENST00000314664.7:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.717C>T
  hgvsp: ENST00000351071.6:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.453C>T
  hgvsp: ENST00000399339.2:c.453C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.534C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.717C>T
  hgvsp: ENST00000282633.5:c.717C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2104
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1831
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23929
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16739
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16858
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1841
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 506
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Asp239Asp
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD

10-51847080-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51847080
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51847080
    reference: chr 10
allele count: 2
allele frequency: 2.105263157894737e-4
allele num: 9500
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*96C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.547C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.730C>T
  hgvsp: ENSP00000344037.6:p.Arg244Trp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.466C>T
  hgvsp: ENSP00000382277.2:p.Arg156Trp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.730C>T
  hgvsp: ENSP00000282633.5:p.Arg244Trp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.730C>T
  hgvsp: ENSP00000314417.7:p.Arg244Trp
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1230
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26154
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11971
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 581
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27156
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 177
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11565
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg244Trp
num of homozygotes: 1
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: QD

10-51847081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51847081
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51847081
    reference: chr 10
allele count: 41
allele frequency: 4.355215636286382e-3
allele num: 9414
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.731G>A
  hgvsp: ENSP00000282633.5:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.467G>A
  hgvsp: ENSP00000382277.2:p.Arg156Gln
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.731G>A
  hgvsp: ENSP00000344037.6:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.731G>A
  hgvsp: ENSP00000314417.7:p.Arg244Gln
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.548G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*97G>A
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2172
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11637
  bin: 7.5e0
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 26274
  bin: 2.5e0
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 1.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 1.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27317
  bin: 7.5e0
  variant carriers: 6
hgvs: p.Arg244Gln
num of homozygotes: 5
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

10-51847088-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51847088
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51847088
    reference: chr 10
allele count: 7
allele frequency: 8.215962441314554e-4
allele num: 8520
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.468+6G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*98+6G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.732+6G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.732+6G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.549+6G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.732+6G>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 328
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8676
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26731
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 995
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27810
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 3.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 9.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7625
  bin: 2.25e1
  variant carriers: 1
hgvs: c.732+6G>T
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-51847094-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51847094
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51847094
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 7402
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.732+12A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.549+12A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.732+12A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*98+12A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.468+12A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.732+12A>G
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26035
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 909
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6695
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1549
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4832
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1795
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 248
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26531
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: A
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

10-51847095-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51847095
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51847095
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 7196
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.549+13T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.732+13T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.732+13T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.468+13T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*98+13T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.732+13T>C
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25796
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 422
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6431
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 874
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26091
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4402
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 86
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

10-51847130-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51847130
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51847130
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 9474
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl transcript: ENST00000492914
  gene symbol: FAM21A
  hgvsc: ENST00000492914.1:n.549+48G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.732+48G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*98+48G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.732+48G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.468+48G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.732+48G>A
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 584
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17944
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1728
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14218
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16409
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1767
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1844
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14048
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD

10-51851877-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51851877
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51851877
    reference: chr 10
allele count: 2
allele frequency: 6.138735420503376e-4
allele num: 3258
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*298-45T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.932-45T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.668-45T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.932-45T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.932-45T>C
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 7047
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 415
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4089
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2921
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: MQ

10-51851887-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51851887
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51851887
    reference: chr 10
allele count: 2
allele frequency: 6.195786864931846e-4
allele num: 3228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.932-35C>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.932-35C>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.932-35C>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.668-35C>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*298-35C>G
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.90to99.95
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7041
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1049
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 435
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 748
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4766
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2239
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

10-51851892-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51851892
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51851892
    reference: chr 10
allele count: 2
allele frequency: 6.215040397762585e-4
allele num: 3218
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.668-30T>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.932-30T>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*298-30T>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.932-30T>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.932-30T>G
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7130
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5120
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 152
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 789
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1013
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1982
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQ
site quality: DP

10-51851948-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51851948
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51851948
    reference: chr 10
allele count: 1
allele frequency: 3.558718861209965e-4
allele num: 2810
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.958C>T
  hgvsp: ENSP00000282633.5:p.Arg320Trp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.958C>T
  hgvsp: ENSP00000314417.7:p.Arg320Trp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.958C>T
  hgvsp: ENSP00000344037.6:p.Arg320Trp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*324C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.694C>T
  hgvsp: ENSP00000382277.2:p.Arg232Trp
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13539
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1360
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12888
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1422
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Arg320Trp
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS

10-51851949-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51851949
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51851949
    reference: chr 10
allele count: 10
allele frequency: 3.566333808844508e-3
allele num: 2804
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.695G>A
  hgvsp: ENSP00000382277.2:p.Arg232Gln
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.959G>A
  hgvsp: ENSP00000282633.5:p.Arg320Gln
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*325G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.959G>A
  hgvsp: ENSP00000344037.6:p.Arg320Gln
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.959G>A
  hgvsp: ENSP00000314417.7:p.Arg320Gln
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13523
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12884
  bin: 7.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Arg320Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS

10-51851959-CAAAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51851959
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51851955
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 2696
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.971_974delAAGA
  hgvsp: ENSP00000282633.5:p.Lys324ArgfsTer22
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.971_974delAAGA
  hgvsp: ENSP00000344037.6:p.Lys324ArgfsTer22
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*337_*340delAAGA
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.971_974delAAGA
  hgvsp: ENSP00000314417.7:p.Lys324ArgfsTer22
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.707_710delAAGA
  hgvsp: ENSP00000382277.2:p.Lys236ArgfsTer22
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13290
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 535
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1391
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12694
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1458
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Lys324ArgfsTer22
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: CAAAG
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum

10-51852019-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51852019
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51852019
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 1838
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*369+26A>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1003+26A>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1003+26A>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1003+26A>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.739+26A>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4323
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 150
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 104
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3280
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: FS

10-51852981-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51852981
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51852981
    reference: chr 10
allele count: 1
allele frequency: 3.968253968253968e-3
allele num: 252
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1004-47G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*370-47G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1004-47G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1004-47G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.740-47G>A
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2296
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 612
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1539
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum

10-51852991-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51852991
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51852991
    reference: chr 10
allele count: 1
allele frequency: 3.846153846153846e-3
allele num: 260
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1004-37T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1004-37T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*370-37T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1004-37T>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.740-37T>C
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2372
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ

10-51853017-C-CTGT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853017
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853020
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 296
alternate allele: CTGT
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1004-9_1004-7dupGTT
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1004-9_1004-7dupGTT
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.740-9_740-7dupGTT
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*370-9_*370-7dupGTT
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1004-9_1004-7dupGTT
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2589
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2329
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: South Asian
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff

10-51853047-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853047
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853047
    reference: chr 10
allele count: 1
allele frequency: 1.207729468599034e-3
allele num: 828
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1023C>T
  hgvsp: ENST00000282633.5:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*389C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.759C>T
  hgvsp: ENST00000399339.2:c.759C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1023C>T
  hgvsp: ENST00000351071.6:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1023C>T
  hgvsp: ENST00000314664.7:c.1023C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1899
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1245
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1802
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Phe341Phe
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum

10-51853110-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853110
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853110
    reference: chr 10
allele count: 1
allele frequency: 3.154574132492114e-4
allele num: 3170
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1086T>A
  hgvsp: ENSP00000344037.6:p.Ser362Arg
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*452T>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.822T>A
  hgvsp: ENSP00000382277.2:p.Ser274Arg
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1086T>A
  hgvsp: ENSP00000282633.5:p.Ser362Arg
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1086T>A
  hgvsp: ENSP00000314417.7:p.Ser362Arg
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1058
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15369
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1908
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15123
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 885
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1614
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser362Arg
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

10-51853115-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853115
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853115
    reference: chr 10
allele count: 1
allele frequency: 2.395783421178726e-4
allele num: 4174
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1091G>A
  hgvsp: ENSP00000344037.6:p.Gly364Asp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.827G>A
  hgvsp: ENSP00000382277.2:p.Gly276Asp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1091G>A
  hgvsp: ENSP00000314417.7:p.Gly364Asp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1091G>A
  hgvsp: ENSP00000282633.5:p.Gly364Asp
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*457G>A
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17465
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1387
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 297
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2234
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17252
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly364Asp
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum

10-51853174-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853174
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853174
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 5588
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1122+28C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*488+28C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.858+28C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1122+28C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1122+28C>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9069
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1556
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9747
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1579
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

10-51853175-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853175
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853175
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 5564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1122+29C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1122+29C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1122+29C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.858+29C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*488+29C>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 433
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6551
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1778
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7149
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 101
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 398
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

10-51853194-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853194
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853194
    reference: chr 10
allele count: 12
allele frequency: 2.162941600576784e-3
allele num: 5548
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1122+48G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1122+48G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*488+48G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.858+48G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1122+48G>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1676
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 4
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ

http://identifiers.org/exac.variant/10-51853617-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853617
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853617
    reference: chr 10
allele count: 2
allele frequency: 1.420454545454545e-3
allele num: 1408
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1123-3C>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*489-3C>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1123-3C>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1123-3C>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.859-3C>A
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2786
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1528
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 259
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2525
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 6.25e1
  variant carriers: 0
hgvs: c.1123-3C>A
num of homozygotes: 1
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff

10-51853633-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853633
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853633
    reference: chr 10
allele count: 381
allele frequency: 1.77705223880597e-1
allele num: 2144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1136C>T
  hgvsp: ENSP00000314417.7:p.Thr379Met
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1136C>T
  hgvsp: ENSP00000344037.6:p.Thr379Met
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1136C>T
  hgvsp: ENSP00000282633.5:p.Thr379Met
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.872C>T
  hgvsp: ENSP00000382277.2:p.Thr291Met
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*502C>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 7740
  bin: 2.5e0
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 1.25e1
  variant carriers: 116
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 1.75e1
  variant carriers: 81
genotype depth: GenotypeDepth
  all individuals: 1173
  bin: 7.5e0
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 2.75e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 2.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 3.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 4.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 4.25e1
  variant carriers: 35
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.75e1
  variant carriers: 20
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 8.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 9.75e1
  variant carriers: 123
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 858
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 7.25e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 5.25e1
  variant carriers: 33
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.25e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 7472
  bin: 7.5e0
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 844
  bin: 2.5e0
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 6.75e1
  variant carriers: 22
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.75e1
  variant carriers: 22
hgvs: p.Thr379Met
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Finnish)
population: African
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

10-51853651-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853651
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853651
    reference: chr 10
allele count: 1
allele frequency: 2.960331557134399e-4
allele num: 3378
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*520G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1154G>A
  hgvsp: ENSP00000282633.5:p.Arg385Gln
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1154G>A
  hgvsp: ENSP00000314417.7:p.Arg385Gln
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1154G>A
  hgvsp: ENSP00000344037.6:p.Arg385Gln
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.890G>A
  hgvsp: ENSP00000382277.2:p.Arg297Gln
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11417
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 330
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 653
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1042
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 53
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 154
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11274
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Arg385Gln
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

10-51853680-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853680
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853680
    reference: chr 10
allele count: 4
allele frequency: 1.06553010122536e-3
allele num: 3754
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1180+3A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*546+3A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.916+3A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1180+3A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1180+3A>G
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12161
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 9.25e1
  variant carriers: 0
hgvs: c.1180+3A>G
num of homozygotes: 1
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-51853700-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853700
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853700
    reference: chr 10
allele count: 2
allele frequency: 3.924646781789639e-4
allele num: 5096
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1180+23C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1180+23C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.916+23C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1180+23C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*546+23C>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 887
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3940
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 883
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 820
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1165
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum

10-51853706-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853706
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853706
    reference: chr 10
allele count: 3
allele frequency: 5.859375e-4
allele num: 5120
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1180+29C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1180+29C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.916+29C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*546+29C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1180+29C>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 871
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3064
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1345
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1089
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1973
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 340
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum

10-51853707-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853707
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853707
    reference: chr 10
allele count: 16
allele frequency: 3.12256049960968e-3
allele num: 5124
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1180+30G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1180+30G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.916+30G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*546+30G>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1180+30G>A
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2854
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 860
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 770
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1172
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 9.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

10-51853712-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853712
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853712
    reference: chr 10
allele count: 1
allele frequency: 1.933488012374323e-4
allele num: 5172
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1180+35C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*546+35C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.916+35C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1180+35C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1180+35C>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2595
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 847
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 124
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 173
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 749
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1018
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1281
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

10-51853715-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51853715
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51853715
    reference: chr 10
allele count: 31
allele frequency: 5.929609793420046e-3
allele num: 5228
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*546+38A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.916+38A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1180+38A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1180+38A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1180+38A>G
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1383
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 867
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2495
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1343
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 2.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1157
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1114
  bin: 6.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 5.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 9.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 2.25e1
  variant carriers: 4
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

10-51854860-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51854860
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51854860
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 56374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.917-48A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1181-48A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1181-48A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*547-48A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1181-48A>G
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14736
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11073
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2292
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13842
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 339
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3942
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25633
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12329
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1758
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 73
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

10-51854877-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51854877
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51854877
    reference: chr 10
allele count: 2
allele frequency: 4.429875077522814e-5
allele num: 45148
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1181-31A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.917-31A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1181-31A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*547-31A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1181-31A>G
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16762
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11625
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12704
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19074
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21570
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4889
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 563
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 201
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
reference allele: A
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum

10-51854886-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51854886
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51854886
    reference: chr 10
allele count: 4
allele frequency: 1.348435814455232e-4
allele num: 29664
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*547-22A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.917-22A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1181-22A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1181-22A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1181-22A>G
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6878
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2796
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19496
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 2
genotype depth: GenotypeDepth
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  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1323
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
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  variant carriers: 0
genotype depth: GenotypeDepth
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  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3172
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26914
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
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  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
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  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10526
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 1
population: South Asian
population: Other
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: DP

10-51854898-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51854898
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51854898
    reference: chr 10
allele count: 1
allele frequency: 1.05999576001696e-4
allele num: 9434
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1181-10C>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1181-10C>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*547-10C>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1181-10C>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.917-10C>G
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 595
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5029
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 937
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1785
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 344
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18677
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3425
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 295
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1895
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7540
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP

http://identifiers.org/exac.variant/10-51854925-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51854925
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51854925
    reference: chr 10
allele count: 1
allele frequency: 1.597954618088846e-4
allele num: 6258
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1198C>A
  hgvsp: ENSP00000314417.7:p.Pro400Thr
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1198C>A
  hgvsp: ENSP00000344037.6:p.Pro400Thr
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*564C>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1198C>A
  hgvsp: ENSP00000282633.5:p.Pro400Thr
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.934C>A
  hgvsp: ENSP00000382277.2:p.Pro312Thr
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1284
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 419
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28922
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27215
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1853
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 7.75e1
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genotype quality: GenotypeQuality
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro400Thr
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP

10-51854961-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51854961
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51854961
    reference: chr 10
allele count: 1
allele frequency: 2.296738631143776e-4
allele num: 4354
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*600T>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.970T>G
  hgvsp: ENSP00000382277.2:p.Phe324Val
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1234T>G
  hgvsp: ENSP00000282633.5:p.Phe412Val
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1234T>G
  hgvsp: ENSP00000344037.6:p.Phe412Val
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1234T>G
  hgvsp: ENSP00000314417.7:p.Phe412Val
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4495
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27412
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 515
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3814
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 553
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 31
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
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  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25212
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 43
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genotype quality: GenotypeQuality
  all individuals: 147
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2405
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Phe412Val
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

10-51855018-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51855018
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51855018
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 3622
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1240+51G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1240+51G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*606+51G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.976+51G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1240+51G>C
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 617
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26249
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1830
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 79
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7353
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18918
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

10-51855308-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51855308
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51855308
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 38352
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1241-51A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.977-51A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1241-51A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*607-51A>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1241-51A>G
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2320
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2340
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12934
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1710
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1766
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4795
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6685
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1251
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2221
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5394
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1378
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3597
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2511
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/10-51855310-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51855310
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51855310
    reference: chr 10
allele count: 3
allele frequency: 7.918074324324325e-5
allele num: 37888
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1241-49C>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*607-49C>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1241-49C>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.977-49C>A
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1241-49C>A
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12915
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1150
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3180
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6226
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2191
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8218
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1503
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 1
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

10-51855310-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51855310
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51855310
    reference: chr 10
allele count: 2
allele frequency: 5.278716216216217e-5
allele num: 37888
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*607-49C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1241-49C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1241-49C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1241-49C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.977-49C>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 12915
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5038
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8024
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2371
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3102
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 807
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2864
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 292
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1077
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  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8218
  bin: 2.25e1
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genotype quality: GenotypeQuality
  all individuals: 3487
  bin: 3.25e1
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genotype quality: GenotypeQuality
  all individuals: 2731
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genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 1503
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  variant carriers: 0
genotype quality: GenotypeQuality
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genotype quality: GenotypeQuality
  all individuals: 12
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genotype quality: GenotypeQuality
  all individuals: 2669
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum

10-51855312-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51855312
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51855312
    reference: chr 10
allele count: 2
allele frequency: 5.185915054711404e-5
allele num: 38566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.977-47G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1241-47G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1241-47G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1241-47G>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*607-47G>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4634
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2421
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13194
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7939
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
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  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2816
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2652
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10018
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1398
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3509
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1746
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1177
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2228
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7398
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1014
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 1
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ

10-51855319-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51855319
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51855319
    reference: chr 10
allele count: 3
allele frequency: 7.560102817398316e-5
allele num: 39682
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1241-40C>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.977-40C>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1241-40C>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1241-40C>G
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*607-40C>G
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14261
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3246
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6955
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6669
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 232
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 408
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12550
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 551
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 492
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2373
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10273
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3225
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2093
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 1
population: African
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: DP

10-51855322-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51855322
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51855322
    reference: chr 10
allele count: 3
allele frequency: 7.447864945382324e-5
allele num: 40280
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1241-37G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1241-37G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1241-37G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*607-37G>C
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.977-37G>C
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1798
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14402
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2756
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2687
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6039
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 806
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 644
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7948
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1961
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 456
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2113
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 81
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11278
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2954
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

10-51855327-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51855327
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51855327
    reference: chr 10
allele count: 265
allele frequency: 6.299324902538747e-3
allele num: 42068
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000403781
  ensembl transcript: ENST00000434114
  gene symbol: FAM21A
  hgvsc: ENST00000434114.2:c.*607-32C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000344037
  ensembl transcript: ENST00000351071
  gene symbol: FAM21A
  hgvsc: ENST00000351071.6:c.1241-32C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000382277
  ensembl transcript: ENST00000399339
  gene symbol: FAM21A
  hgvsc: ENST00000399339.2:c.977-32C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000282633
  ensembl transcript: ENST00000282633
  gene symbol: FAM21A
  hgvsc: ENST00000282633.5:c.1241-32C>T
  variant of: http://identifiers.org/hgnc/23416
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000099290
  ensembl protein: ENSP00000314417
  ensembl transcript: ENST00000314664
  gene symbol: FAM21A
  hgvsc: ENST00000314664.7:c.1241-32C>T
  variant of: http://identifiers.org/hgnc/23416
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1822
  bin: 3.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14226
  bin: 7.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2144
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10134
  bin: 2.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 524
  bin: 1.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 818
  bin: 3.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4580
  bin: 1.25e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2875
  bin: 2.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13549
  bin: 6.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 13252
  bin: 2.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1757
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 2.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 5.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 1.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 6.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1666
  bin: 2.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 272
  bin: 4.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 191
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 5.25e1
  variant carriers: 10
num of homozygotes: 88
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: BaseQRankSum

GenotypeQuality
all individuals: 3276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5924
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.658703e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.69e-1

MQ
type: SiteQuality
SIO_000300: 4.028e1

FS
type: SiteQuality
SIO_000300: 6.411e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.67e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.74e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 8.07e0

MQRankSum
type: SiteQuality
SIO_000300: -6.946e0

VQSLOD
type: SiteQuality
SIO_000300: -2.521e1

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2443
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 4.637143519591931e-4
allele num: 8626
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66738
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.28e-1

DP
type: SiteQuality
SIO_000300: 1.659243e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.25e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.492e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.481e0

MQRankSum
type: SiteQuality
SIO_000300: 9.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.053e0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.6e-2

GenotypeQuality
all individuals: 2560
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1108
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1465
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
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Other
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allele num: 900
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 9802
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European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
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ReadPosRankSum
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MQ
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InbreedingCoeff
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SIO_000300: 4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 5.75e-1

DP
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FS
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ClippingRankSum
type: SiteQuality
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QD
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 2.996793431028799e-5
allele num: 66738
num of homozygotes: 0

South Asian
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Latino
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African
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Other
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.86e-1

FS
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QD
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BaseQRankSum
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VQSLOD
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MQ
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

MQRankSum
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ClippingRankSum
type: SiteQuality
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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Other
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allele num: 900
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East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 5.993586862057598e-5
allele num: 66738
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African
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num of homozygotes: 0

Latino
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allele count: 15
allele frequency: 1.295784381478922e-3
allele num: 11576
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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MQ
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ClippingRankSum
type: SiteQuality
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InbreedingCoeff
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QD
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FS
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VQSLOD
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BaseQRankSum
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MQRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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South Asian
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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Other
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African
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allele num: 9802
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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QD
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 900
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.498486528606108e-5
allele num: 66734
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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MQRankSum
type: SiteQuality
SIO_000300: 1.15e0

ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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FS
type: SiteQuality
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DP
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VQSLOD
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QD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.048972007432716e-4
allele num: 66732
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Other
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allele num: 900
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQRankSum
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ReadPosRankSum
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FS
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DP
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VQSLOD
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InbreedingCoeff
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QD
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MQ
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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allele frequency: 1.020199959192002e-4
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East Asian
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allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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BaseQRankSum
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VQSLOD
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QD
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ClippingRankSum
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MQ
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FS
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MQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.498486528606108e-5
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Latino
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African
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South Asian
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Other
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MQRankSum
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InbreedingCoeff
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DP
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FS
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ClippingRankSum
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VQSLOD
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ReadPosRankSum
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MQ
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 898
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European (Non-Finnish)
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allele num: 66734
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African
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South Asian
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Latino
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European (Finnish)
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num of homozygotes: 0

East Asian
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FS
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VQSLOD
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DP
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MQ
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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ReadPosRankSum
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Other
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South Asian
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European (Non-Finnish)
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East Asian
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Latino
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European (Finnish)
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InbreedingCoeff
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BaseQRankSum
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FS
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ClippingRankSum
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QD
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MQRankSum
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MQ
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VQSLOD
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ReadPosRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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South Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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VQSLOD
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InbreedingCoeff
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FS
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DP
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ReadPosRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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MQ
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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European (Non-Finnish)
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allele frequency: 1.498711108446736e-5
allele num: 66724
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African
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East Asian
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Latino
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.659918e6

MQRankSum
type: SiteQuality
SIO_000300: -9.350000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.91e-1

MQ
type: SiteQuality
SIO_000300: 4.825e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.34e0

QD
type: SiteQuality
SIO_000300: 9.44e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

FS
type: SiteQuality
SIO_000300: 1.0828e1

VQSLOD
type: SiteQuality
SIO_000300: -2.297e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.14e-1

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6776
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497751124437781e-5
allele num: 66700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.015e1

FS
type: SiteQuality
SIO_000300: 5.239e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.031e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.600000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.588000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e-2

QD
type: SiteQuality
SIO_000300: 1.179e1

DP
type: SiteQuality
SIO_000300: 1.659526e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: -6.49e-1

GenotypeQuality
all individuals: 1467
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5958
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1110
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9798
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.004266057802079e-5
allele num: 66572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16290
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.88e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.13e-1

MQ
type: SiteQuality
SIO_000300: 5.311e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.81e0

QD
type: SiteQuality
SIO_000300: 1.589e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.12e-1

DP
type: SiteQuality
SIO_000300: 1.65038e6

MQRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 1305
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3266
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1110
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503578516870151e-5
allele num: 66508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16160
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.379e1

DP
type: SiteQuality
SIO_000300: 1.638417e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.64e0

VQSLOD
type: SiteQuality
SIO_000300: -1.678e0

MQRankSum
type: SiteQuality
SIO_000300: -1.68e0

MQ
type: SiteQuality
SIO_000300: 5.399e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.384e0

GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3264
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5968
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 1111
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.318571759795966e-4
allele num: 8626
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504211793020457e-5
allele num: 66480
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.222775357809582e-5
allele num: 16070
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.075e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.226e1

FS
type: SiteQuality
SIO_000300: 2.406e0

DP
type: SiteQuality
SIO_000300: 1.624828e6

QD
type: SiteQuality
SIO_000300: 1.289e1

MQRankSum
type: SiteQuality
SIO_000300: 4.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.57e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.67e-1

GenotypeQuality
all individuals: 121
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 622
bin: 8.75e1
variant carriers: 25

GenotypeQuality
all individuals: 2039
bin: 7.75e1
variant carriers: 23

GenotypeQuality
all individuals: 267
bin: 4.25e1
variant carriers: 16

GenotypeQuality
all individuals: 153
bin: 1.75e1
variant carriers: 4

Other
type: Population
allele count: 127
allele frequency: 1.439909297052154e-1
allele num: 882
num of homozygotes: 8

European (Non-Finnish)
type: Population
allele count: 11480
allele frequency: 1.732464083061693e-1
allele num: 66264
num of homozygotes: 1042

Latino
type: Population
allele count: 896
allele frequency: 7.744165946413137e-2
allele num: 11570
num of homozygotes: 39

European (Finnish)
type: Population
allele count: 1230
allele frequency: 1.859691563350469e-1
allele num: 6614
num of homozygotes: 124

East Asian
type: Population
allele count: 56
allele frequency: 6.496519721577726e-3
allele num: 8620
num of homozygotes: 0

South Asian
type: Population
allele count: 1469
allele frequency: 9.437234999357574e-2
allele num: 15566
num of homozygotes: 77

African
type: Population
allele count: 2064
allele frequency: 2.111292962356792e-1
allele num: 9776
num of homozygotes: 210

ClippingRankSum
type: SiteQuality
SIO_000300: -2.79e-1

QD
type: SiteQuality
SIO_000300: 1.778e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.48e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.1e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 6.71e-1

DP
type: SiteQuality
SIO_000300: 2.159148e6

MQ
type: SiteQuality
SIO_000300: 4.883e1

GenotypeQuality
all individuals: 16
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1233
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
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variant carriers: 1

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1844
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.369668246445498e-3
allele num: 422
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.4393e4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.23e-2

VQSLOD
type: SiteQuality
SIO_000300: 2.77e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.18e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.387e1

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.91e-1

QD
type: SiteQuality
SIO_000300: 1.547e1

GenotypeQuality
all individuals: 79
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 20
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2293
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 35
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variant carriers: 0

GenotypeQuality
all individuals: 10
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variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.136363636363636e-3
allele num: 1760
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.14e-2

QD
type: SiteQuality
SIO_000300: 2.086e1

MQ
type: SiteQuality
SIO_000300: 2.22e1

VQSLOD
type: SiteQuality
SIO_000300: -5.392e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.3433e4

GenotypeQuality
all individuals: 13213
bin: 7.5e0
variant carriers: 1615

GenotypeQuality
all individuals: 1060
bin: 6.25e1
variant carriers: 145

GenotypeQuality
all individuals: 314
bin: 5.75e1
variant carriers: 311

GenotypeQuality
all individuals: 109
bin: 8.25e1
variant carriers: 61

GenotypeQuality
all individuals: 466
bin: 7.25e1
variant carriers: 365

GenotypeQuality
all individuals: 611
bin: 2.75e1
variant carriers: 570

GenotypeQuality
all individuals: 375
bin: 7.75e1
variant carriers: 267

GenotypeQuality
all individuals: 216
bin: 8.75e1
variant carriers: 210

GenotypeQuality
all individuals: 838
bin: 5.25e1
variant carriers: 835

GenotypeQuality
all individuals: 327
bin: 9.25e1
variant carriers: 319

African
type: Population
allele count: 220
allele frequency: 1.923076923076923e-1
allele num: 1144
num of homozygotes: 66

Latino
type: Population
allele count: 609
allele frequency: 6.114457831325302e-1
allele num: 996
num of homozygotes: 181

European (Non-Finnish)
type: Population
allele count: 3588
allele frequency: 4.58120531154239e-1
allele num: 7832
num of homozygotes: 973

East Asian
type: Population
allele count: 52
allele frequency: 1.238095238095238e-1
allele num: 420
num of homozygotes: 13

South Asian
type: Population
allele count: 580
allele frequency: 4.957264957264957e-1
allele num: 1170
num of homozygotes: 138

Other
type: Population
allele count: 40
allele frequency: 3.846153846153846e-1
allele num: 104
num of homozygotes: 12

European (Finnish)
type: Population
allele count: 292
allele frequency: 4.834437086092715e-1
allele num: 604
num of homozygotes: 68

BaseQRankSum
type: SiteQuality
SIO_000300: -1.688e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 5.378e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.073e-1

DP
type: SiteQuality
SIO_000300: 3.88066e5

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.0e1

QD
type: SiteQuality
SIO_000300: 1.573e1

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 1481
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 17468
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GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
all individuals: 89
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variant carriers: 0

GenotypeQuality
all individuals: 185
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 704
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1657
bin: 1.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 952
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.189141856392294e-4
allele num: 4568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 154
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 412
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.29e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

VQSLOD
type: SiteQuality
SIO_000300: -6.169e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.09e-2

MQ
type: SiteQuality
SIO_000300: 2.0e1

DP
type: SiteQuality
SIO_000300: 2.70131e5

GenotypeQuality
all individuals: 0
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 143
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 6.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 5.0e-1
allele num: 2
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.559e0

MQ
type: SiteQuality
SIO_000300: 2.563e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.037e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.97e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.75e2

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

QD
type: SiteQuality
SIO_000300: 1.209e1

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 0
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variant carriers: 0

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 2
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variant carriers: 1

GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
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allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.655e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
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SIO_000300: -8.92e-2

VQSLOD
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DP
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QD
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 1.401869158878505e-2
allele num: 214
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 40
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European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
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ClippingRankSum
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InbreedingCoeff
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BaseQRankSum
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VQSLOD
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FS
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MQRankSum
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MQ
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QD
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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InbreedingCoeff
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QD
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DP
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FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.168e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 750
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Latino
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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African
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allele frequency: 8.580343213728549e-3
allele num: 1282
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 5474
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MQ
type: SiteQuality
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQRankSum
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QD
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 9.880000000000001e0

InbreedingCoeff
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DP
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SIO_000300: 2.8377e5

FS
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SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.117e1

VQSLOD
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SIO_000300: -7.263e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 440
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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African
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Other
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South Asian
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allele frequency: 1.893939393939394e-3
allele num: 1056
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.78e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.5e-1

MQRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 2.03e1

FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.406e1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 440
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 4.026073619631902e-3
allele num: 5216
num of homozygotes: 4

African
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allele frequency: 1.374570446735395e-2
allele num: 1164
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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South Asian
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allele frequency: 3.773584905660377e-3
allele num: 1060
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VQSLOD
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MQ
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FS
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ClippingRankSum
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 6.554307116104869e-3
allele num: 1068
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South Asian
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European (Non-Finnish)
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Other
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East Asian
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allele frequency: 0.0e0
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Latino
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FS
type: SiteQuality
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VQSLOD
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MQRankSum
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QD
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MQ
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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European (Finnish)
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African
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European (Non-Finnish)
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Other
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East Asian
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FS
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MQRankSum
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MQ
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ClippingRankSum
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DP
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VQSLOD
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QD
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ReadPosRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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South Asian
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African
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Latino
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East Asian
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Other
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ReadPosRankSum
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ClippingRankSum
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FS
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QD
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BaseQRankSum
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MQRankSum
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VQSLOD
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MQ
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DP
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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East Asian
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Other
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South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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MQ
type: SiteQuality
SIO_000300: 2.784e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.201e1

DP
type: SiteQuality
SIO_000300: 2.54458e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.35e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.537e0

GenotypeQuality
all individuals: 204
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 8
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 56
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.937984496124031e-3
allele num: 516
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 5.015045135406219e-4
allele num: 1994
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.677e2

ClippingRankSum
type: SiteQuality
SIO_000300: 6.21e-1

QD
type: SiteQuality
SIO_000300: 3.01e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.22e-1

DP
type: SiteQuality
SIO_000300: 5.468e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.030000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 1.8964e2

MQ
type: SiteQuality
SIO_000300: 2.241e1

GenotypeQuality
all individuals: 143
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 153
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 138
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.861003861003861e-3
allele num: 518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 334
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.86e-2

QD
type: SiteQuality
SIO_000300: 3.01e0

MQRankSum
type: SiteQuality
SIO_000300: -1.678e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.56e0

FS
type: SiteQuality
SIO_000300: 8.286799999999999e1

VQSLOD
type: SiteQuality
SIO_000300: -3.496e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.03e-1

MQ
type: SiteQuality
SIO_000300: 2.251e1

DP
type: SiteQuality
SIO_000300: 5.5306e4

GenotypeQuality
all individuals: 56
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 1.01419878296146e-3
allele num: 1972
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 330
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 136
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.135e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.599999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.891e1

MQ
type: SiteQuality
SIO_000300: 2.246e1

DP
type: SiteQuality
SIO_000300: 5.5928e4

GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 102
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.496503496503497e-3
allele num: 286
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1696
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 474
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.6293e4

MQRankSum
type: SiteQuality
SIO_000300: -2.115e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.898e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.33e0

QD
type: SiteQuality
SIO_000300: 9.91e0

VQSLOD
type: SiteQuality
SIO_000300: -5.623e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.11e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -1.63e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 104
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.25e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 9
allele frequency: 5.312868949232586e-3
allele num: 1694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.092050209205021e-3
allele num: 478
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 176
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.17e-1

QD
type: SiteQuality
SIO_000300: 3.94e0

VQSLOD
type: SiteQuality
SIO_000300: -2.825e2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.01e-1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.2e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.78e-2

DP
type: SiteQuality
SIO_000300: 6.6483e4

FS
type: SiteQuality
SIO_000300: 2.48104e2

GenotypeQuality
all individuals: 81
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1608
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

QD
type: SiteQuality
SIO_000300: 1.055e1

DP
type: SiteQuality
SIO_000300: 6.4723e4

VQSLOD
type: SiteQuality
SIO_000300: -1.195e0

MQ
type: SiteQuality
SIO_000300: 2.304e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.16e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

FS
type: SiteQuality
SIO_000300: 3.332e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.495e0

GenotypeQuality
all individuals: 195
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 9.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 212
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 118
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1048
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.47e-2

QD
type: SiteQuality
SIO_000300: 1.249e1

MQ
type: SiteQuality
SIO_000300: 2.2e1

DP
type: SiteQuality
SIO_000300: 3.1761e4

VQSLOD
type: SiteQuality
SIO_000300: -5.208e0

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 175
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.555555555555556e-3
allele num: 180
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.192e1

DP
type: SiteQuality
SIO_000300: 9.428e3

VQSLOD
type: SiteQuality
SIO_000300: -4.865e0

QD
type: SiteQuality
SIO_000300: 4.12e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.84e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.87e0

GenotypeQuality
all individuals: 3
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 36
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 5.747126436781609e-3
allele num: 174
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.14e0

DP
type: SiteQuality
SIO_000300: 1.0033e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.080000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

MQ
type: SiteQuality
SIO_000300: 2.174e1

GenotypeQuality
all individuals: 189
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 531
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 94
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 190
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.418e1

VQSLOD
type: SiteQuality
SIO_000300: 2.9e0

QD
type: SiteQuality
SIO_000300: 2.397e1

DP
type: SiteQuality
SIO_000300: 1.255e4

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.47e-2

GenotypeQuality
all individuals: 50
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 200
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 78
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 3.968253968253968e-3
allele num: 252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 18
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.1412e4

VQSLOD
type: SiteQuality
SIO_000300: -7.321e0

FS
type: SiteQuality
SIO_000300: 1.3424e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.788e0

QD
type: SiteQuality
SIO_000300: 3.98e0

MQRankSum
type: SiteQuality
SIO_000300: 1.98e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.31e-1

MQ
type: SiteQuality
SIO_000300: 2.18e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.95e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.134e0

GenotypeQuality
all individuals: 187
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 2.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.717391304347826e-3
allele num: 368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 604
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 216
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.92e0

MQRankSum
type: SiteQuality
SIO_000300: 1.3e0

VQSLOD
type: SiteQuality
SIO_000300: -2.12e0

MQ
type: SiteQuality
SIO_000300: 3.567e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.77e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.38e0

FS
type: SiteQuality
SIO_000300: 1.189e0

DP
type: SiteQuality
SIO_000300: 7.9382e4

QD
type: SiteQuality
SIO_000300: 1.013e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

GenotypeQuality
all individuals: 1235
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 5.617977528089887e-3
allele num: 178
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2426
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.162e0

MQRankSum
type: SiteQuality
SIO_000300: 3.73e-1

FS
type: SiteQuality
SIO_000300: 3.31e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.07e0

MQ
type: SiteQuality
SIO_000300: 3.113e1

VQSLOD
type: SiteQuality
SIO_000300: -3.979e0

DP
type: SiteQuality
SIO_000300: 9.8014e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.459999999999999e-2

QD
type: SiteQuality
SIO_000300: 6.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.162e0

GenotypeQuality
all individuals: 401
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3312
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 982
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.888e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.57e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

DP
type: SiteQuality
SIO_000300: 9.3815e4

FS
type: SiteQuality
SIO_000300: 1.165e0

MQ
type: SiteQuality
SIO_000300: 3.082e1

MQRankSum
type: SiteQuality
SIO_000300: 4.16e-1

QD
type: SiteQuality
SIO_000300: 6.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

GenotypeQuality
all individuals: 115
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1564
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 50
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3304
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 370
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 976
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.758e0

DP
type: SiteQuality
SIO_000300: 8.7535e4

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.01e-2

QD
type: SiteQuality
SIO_000300: 1.567e1

MQ
type: SiteQuality
SIO_000300: 3.345e1

GenotypeQuality
all individuals: 28
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 280
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 528
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 1.232032854209446e-2
allele num: 974
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.2119e4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

QD
type: SiteQuality
SIO_000300: 1.635e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.38e-1

FS
type: SiteQuality
SIO_000300: 8.59e0

VQSLOD
type: SiteQuality
SIO_000300: -6.086e0

MQRankSum
type: SiteQuality
SIO_000300: -5.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.599999999999999e-3

MQ
type: SiteQuality
SIO_000300: 2.512e1

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 858
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.96078431372549e-2
allele num: 102
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.131e0

QD
type: SiteQuality
SIO_000300: 2.079e1

MQ
type: SiteQuality
SIO_000300: 2.154e1

DP
type: SiteQuality
SIO_000300: 3.1316e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.83e-2

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 28

GenotypeQuality
all individuals: 21
bin: 9.25e1
variant carriers: 17

GenotypeQuality
all individuals: 426
bin: 6.25e1
variant carriers: 20

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 33

GenotypeQuality
all individuals: 21
bin: 8.25e1
variant carriers: 13

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 19

European (Non-Finnish)
type: Population
allele count: 178
allele frequency: 1.346444780635401e-1
allele num: 1322
num of homozygotes: 0

East Asian
type: Population
allele count: 66
allele frequency: 3.51063829787234e-1
allele num: 188
num of homozygotes: 0

Latino
type: Population
allele count: 13
allele frequency: 1.857142857142857e-1
allele num: 70
num of homozygotes: 0

South Asian
type: Population
allele count: 22
allele frequency: 2.0e-1
allele num: 110
num of homozygotes: 0

Other
type: Population
allele count: 4
allele frequency: 2.857142857142857e-1
allele num: 14
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 2.0e-1
allele num: 10
num of homozygotes: 0

African
type: Population
allele count: 96
allele frequency: 2.232558139534884e-1
allele num: 430
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.014e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.12e-1

DP
type: SiteQuality
SIO_000300: 5.947e4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.53e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.832e0

MQ
type: SiteQuality
SIO_000300: 2.104e1

QD
type: SiteQuality
SIO_000300: 3.96e0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1970
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.483679525222552e-3
allele num: 674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 126
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.0733e4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.52e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.073e0

MQ
type: SiteQuality
SIO_000300: 2.18e1

VQSLOD
type: SiteQuality
SIO_000300: -6.305e0

QD
type: SiteQuality
SIO_000300: 5.06e0

MQRankSum
type: SiteQuality
SIO_000300: -2.59e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.44e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e0

GenotypeQuality
all individuals: 11991
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 155
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 192
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 152
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 5.714285714285714e-3
allele num: 350
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 9.074410163339383e-4
allele num: 2204
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.6992e4

MQ
type: SiteQuality
SIO_000300: 2.172e1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

VQSLOD
type: SiteQuality
SIO_000300: -5.152e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.34e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

QD
type: SiteQuality
SIO_000300: 1.568e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.450000000000001e-2

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.012145748987854e-3
allele num: 988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.155172413793103e-3
allele num: 464
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.8e-2

MQ
type: SiteQuality
SIO_000300: 2.285e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e-1

QD
type: SiteQuality
SIO_000300: 3.6e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.577e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.899999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.01e0

FS
type: SiteQuality
SIO_000300: 1.0431e1

DP
type: SiteQuality
SIO_000300: 7.4493e4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.25e0

GenotypeQuality
all individuals: 1081
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 84
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.036437246963563e-3
allele num: 988
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.72e-1

MQ
type: SiteQuality
SIO_000300: 2.058e1

FS
type: SiteQuality
SIO_000300: 2.953e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.036e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.67e-1

QD
type: SiteQuality
SIO_000300: 2.75e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.37e-2

DP
type: SiteQuality
SIO_000300: 7.2604e4

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
all individuals: 1044
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 95
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 52
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 335
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 238
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2996
num of homozygotes: 0

African
type: Population
allele count: 16
allele frequency: 1.612903225806452e-2
allele num: 992
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.481e0

MQRankSum
type: SiteQuality
SIO_000300: -1.489e0

MQ
type: SiteQuality
SIO_000300: 2.13e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.34e-1

DP
type: SiteQuality
SIO_000300: 7.2568e4

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.38e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 8.98e-1

QD
type: SiteQuality
SIO_000300: 2.87e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.1e-2

GenotypeQuality
all individuals: 105
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.857142857142857e-3
allele num: 350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3036
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.494e0

QD
type: SiteQuality
SIO_000300: 8.75e0

FS
type: SiteQuality
SIO_000300: 1.0519e1

MQRankSum
type: SiteQuality
SIO_000300: 1.09e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.14e-2

VQSLOD
type: SiteQuality
SIO_000300: -8.587999999999999e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.9e-1

MQ
type: SiteQuality
SIO_000300: 2.101e1

DP
type: SiteQuality
SIO_000300: 7.2209e4

ClippingRankSum
type: SiteQuality
SIO_000300: 2.91e-1

GenotypeQuality
all individuals: 53
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 76
bin: 3.75e1
variant carriers: 3

GenotypeQuality
all individuals: 76
bin: 5.25e1
variant carriers: 3

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 29
allele frequency: 2.947154471544716e-2
allele num: 984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 358
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 7.936507936507936e-3
allele num: 252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3084
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 466
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -7.494e0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.3e-2

FS
type: SiteQuality
SIO_000300: 1.6524e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.37e-2

QD
type: SiteQuality
SIO_000300: 9.5e-1

MQ
type: SiteQuality
SIO_000300: 2.124e1

MQRankSum
type: SiteQuality
SIO_000300: -1.767e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.129999999999999e-1

DP
type: SiteQuality
SIO_000300: 7.4719e4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

GenotypeQuality
all individuals: 352
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 304
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9120
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6298
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3170
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3542
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6204
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 484
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26182
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.26e1

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

QD
type: SiteQuality
SIO_000300: 1.001e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.26e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.03483e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.55e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
all individuals: 15
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1286
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2790
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.967216371945162e-5
allele num: 20132
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9300
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.916443081640475e-4
allele num: 5218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 404
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.951e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.46e-2

VQSLOD
type: SiteQuality
SIO_000300: -7.366e0

MQ
type: SiteQuality
SIO_000300: 2.243e1

MQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 5.58299e5

QD
type: SiteQuality
SIO_000300: 1.093e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.85e-1

GenotypeQuality
all individuals: 18
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 835
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7094
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 274
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1660
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1078
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 3.138731952291275e-4
allele num: 3186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3794
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 2.385116870726666e-4
allele num: 12578
num of homozygotes: 1

FS
type: SiteQuality
SIO_000300: 6.377e0

VQSLOD
type: SiteQuality
SIO_000300: -6.665e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.23e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

MQRankSum
type: SiteQuality
SIO_000300: 8.169999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.12e-1

QD
type: SiteQuality
SIO_000300: 7.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.54e-1

MQ
type: SiteQuality
SIO_000300: 2.196e1

DP
type: SiteQuality
SIO_000300: 4.40615e5

GenotypeQuality
all individuals: 1213
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1158
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1780
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5058
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.618122977346278e-3
allele num: 618
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1402
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 9.109999999999999e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.36e-1

MQ
type: SiteQuality
SIO_000300: 3.236e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.31e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.070000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

FS
type: SiteQuality
SIO_000300: 6.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.951e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.26e-1

DP
type: SiteQuality
SIO_000300: 2.1556e5

GenotypeQuality
all individuals: 33
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 295
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 202
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 879
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 920
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3280
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 8.47457627118644e-4
allele num: 1180
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.526e0

MQRankSum
type: SiteQuality
SIO_000300: -1.196e0

VQSLOD
type: SiteQuality
SIO_000300: -3.975e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.36e0

MQ
type: SiteQuality
SIO_000300: 2.6e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.53e-2

QD
type: SiteQuality
SIO_000300: 1.228e1

FS
type: SiteQuality
SIO_000300: 2.831e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.928e0

DP
type: SiteQuality
SIO_000300: 1.78432e5

GenotypeQuality
all individuals: 22
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 752
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.284490145672665e-4
allele num: 2334
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 352
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.96e-1

DP
type: SiteQuality
SIO_000300: 1.45566e5

MQ
type: SiteQuality
SIO_000300: 2.2e1

QD
type: SiteQuality
SIO_000300: 3.2e1

MQRankSum
type: SiteQuality
SIO_000300: -2.78e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.951e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.989999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 45
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 294
bin: 9.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 112
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 354
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.031e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.805e0

MQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQ
type: SiteQuality
SIO_000300: 2.3e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

QD
type: SiteQuality
SIO_000300: 6.61e0

DP
type: SiteQuality
SIO_000300: 1.29119e5

GenotypeQuality
all individuals: 15
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 523
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 313
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2390
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2400
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2446
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2354
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21366
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.77255e5

MQ
type: SiteQuality
SIO_000300: 3.411e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.05e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.495e0

QD
type: SiteQuality
SIO_000300: 1.661e1

GenotypeQuality
all individuals: 2731
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 902
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1077
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2340
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2364
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 1.422070534698521e-4
allele num: 21096
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7072
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

DP
type: SiteQuality
SIO_000300: 4.82935e5

VQSLOD
type: SiteQuality
SIO_000300: -5.001e0

MQ
type: SiteQuality
SIO_000300: 2.697e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.05e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

QD
type: SiteQuality
SIO_000300: 1.047e1

GenotypeQuality
all individuals: 902
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2191
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2322
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21096
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 8.312551953449709e-4
allele num: 2406
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2364
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7072
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2340
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.82935e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.05e-2

MQRankSum
type: SiteQuality
SIO_000300: 8.3e-1

MQ
type: SiteQuality
SIO_000300: 2.697e1

VQSLOD
type: SiteQuality
SIO_000300: -5.001e0

QD
type: SiteQuality
SIO_000300: 1.047e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.9e-2

GenotypeQuality
all individuals: 11
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 21496
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 8.438818565400844e-4
allele num: 2370
num of homozygotes: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7118
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.4e-3

QD
type: SiteQuality
SIO_000300: 2.026e1

DP
type: SiteQuality
SIO_000300: 4.94391e5

VQSLOD
type: SiteQuality
SIO_000300: -5.437e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.552e1

GenotypeQuality
all individuals: 21
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2089
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2454
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2570
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.501665616278023e-5
allele num: 22214
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.773925104022191e-4
allele num: 7210
num of homozygotes: 1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

QD
type: SiteQuality
SIO_000300: 2.189e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.78e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.96e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.502e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.86e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.697e1

DP
type: SiteQuality
SIO_000300: 5.25636e5

GenotypeQuality
all individuals: 12963
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 362
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 4.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7236
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22630
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 1.196172248803828e-3
allele num: 2508
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2474
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2604
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2530
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.465e0

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 5.40016e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.14e0

QD
type: SiteQuality
SIO_000300: 1.052e1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.3e-2

MQ
type: SiteQuality
SIO_000300: 2.675e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-2

GenotypeQuality
all individuals: 239
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 3.75e1
variant carriers: 18

GenotypeQuality
all individuals: 12
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 90
bin: 8.25e1
variant carriers: 2

GenotypeQuality
all individuals: 110
bin: 9.75e1
variant carriers: 91

European (Finnish)
type: Population
allele count: 12
allele frequency: 4.6875e-3
allele num: 2560
num of homozygotes: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2676
num of homozygotes: 0

Latino
type: Population
allele count: 11
allele frequency: 3.939828080229226e-3
allele num: 2792
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 241
allele frequency: 1.013286242852338e-2
allele num: 23784
num of homozygotes: 83

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7326
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 3.246753246753247e-3
allele num: 308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2622
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.266e0