6-29911000-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911000
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911000
    reference: chr 6
allele count: 22932
allele frequency: 3.620461004104831e-1
allele num: 63340
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.542T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-45T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.540T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-45T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-62T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.540T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-45T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-45T>G
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 9513
  bin: 1.75e1
  variant carriers: 5732
genotype depth: GenotypeDepth
  all individuals: 15806
  bin: 7.5e0
  variant carriers: 8895
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 2.5e0
  variant carriers: 3732
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.25e1
  variant carriers: 535
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 121
genotype depth: GenotypeDepth
  all individuals: 14464
  bin: 1.25e1
  variant carriers: 8458
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 2.25e1
  variant carriers: 2889
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 262
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 2.75e1
  variant carriers: 1248
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 63
genotype quality: GenotypeQuality
  all individuals: 765
  bin: 7.25e1
  variant carriers: 442
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 7.5e0
  variant carriers: 1585
genotype quality: GenotypeQuality
  all individuals: 1940
  bin: 1.25e1
  variant carriers: 1206
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 8.75e1
  variant carriers: 377
genotype quality: GenotypeQuality
  all individuals: 1174
  bin: 6.75e1
  variant carriers: 585
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 9.25e1
  variant carriers: 454
genotype quality: GenotypeQuality
  all individuals: 1345
  bin: 4.25e1
  variant carriers: 682
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 2.25e1
  variant carriers: 2037
num of homozygotes: 3883
population: European (Finnish)
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

6-29911000-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911000
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911000
    reference: chr 6
allele count: 30090
allele frequency: 4.750552573413325e-1
allele num: 63340
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-45T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.540T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.542T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.540T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-45T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-45T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-62T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-45T>C
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 5.25e1
  variant carriers: 47
genotype depth: GenotypeDepth
  all individuals: 5159
  bin: 2.25e1
  variant carriers: 4187
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 3.75e1
  variant carriers: 381
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 5.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 15806
  bin: 7.5e0
  variant carriers: 6132
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5918
  bin: 2.5e0
  variant carriers: 1204
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 14464
  bin: 1.25e1
  variant carriers: 8430
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 9513
  bin: 1.75e1
  variant carriers: 6920
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 4.25e1
  variant carriers: 176
genotype depth: GenotypeDepth
  all individuals: 1069
  bin: 3.25e1
  variant carriers: 917
genotype depth: GenotypeDepth
  all individuals: 2417
  bin: 2.75e1
  variant carriers: 2042
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 4.75e1
  variant carriers: 1010
genotype quality: GenotypeQuality
  all individuals: 4024
  bin: 2.25e1
  variant carriers: 1593
genotype quality: GenotypeQuality
  all individuals: 3640
  bin: 2.5e0
  variant carriers: 209
genotype quality: GenotypeQuality
  all individuals: 3154
  bin: 3.25e1
  variant carriers: 1487
genotype quality: GenotypeQuality
  all individuals: 938
  bin: 5.75e1
  variant carriers: 539
genotype quality: GenotypeQuality
  all individuals: 1988
  bin: 2.75e1
  variant carriers: 873
genotype quality: GenotypeQuality
  all individuals: 2566
  bin: 7.5e0
  variant carriers: 566
genotype quality: GenotypeQuality
  all individuals: 787
  bin: 8.25e1
  variant carriers: 479
num of homozygotes: 7353
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum

6-29911001-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911001
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911001
    reference: chr 6
allele count: 2
allele frequency: 3.124121340872879e-5
allele num: 64018
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.541G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.543G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-44G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.541G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-44G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-44G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-61G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-44G>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8960
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15382
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1075
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2420
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14435
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8853
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4724
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1994
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4529
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4107
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11135
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5748
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9290
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 7.75e1
  variant carriers: 1
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: VQSLOD

6-29911002-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911002
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911002
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 63796
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-43G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-43G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-60G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-43G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-43G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.542G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.542G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.544G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8848
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2412
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4720
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1065
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15407
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8857
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2029
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10432
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 656
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3083
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 693
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 449
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1300
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

6-29911003-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911003
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911003
    reference: chr 6
allele count: 12143
allele frequency: 1.911260112695564e-1
allele num: 63534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.543G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-59G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-42G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.543G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-42G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-42G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.545G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-42G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 2.5e0
  variant carriers: 362
genotype depth: GenotypeDepth
  all individuals: 14285
  bin: 1.25e1
  variant carriers: 3406
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15206
  bin: 7.5e0
  variant carriers: 2193
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 2.75e1
  variant carriers: 1167
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 246
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 1.75e1
  variant carriers: 3044
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.25e1
  variant carriers: 536
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 2.25e1
  variant carriers: 2125
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2838
  bin: 1.25e1
  variant carriers: 210
genotype quality: GenotypeQuality
  all individuals: 9622
  bin: 2.25e1
  variant carriers: 503
genotype quality: GenotypeQuality
  all individuals: 4519
  bin: 3.25e1
  variant carriers: 425
genotype quality: GenotypeQuality
  all individuals: 8591
  bin: 7.5e0
  variant carriers: 185
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 7.75e1
  variant carriers: 96
genotype quality: GenotypeQuality
  all individuals: 9944
  bin: 9.75e1
  variant carriers: 9609
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.25e1
  variant carriers: 57
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 6.75e1
  variant carriers: 99
num of homozygotes: 1466
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD

6-29911003-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911003
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911003
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 63534
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.545G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-42G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-42G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-42G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-42G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-59G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.543G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.543G>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15206
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1082
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14285
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8621
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2838
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3234
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4519
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1236
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3306
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1309
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9622
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: Latino
population: East Asian
reference allele: G
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

6-29911004-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911004
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911004
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 62594
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-58C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.546C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-41C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.544C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.544C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-41C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-41C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-41C>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14434
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9012
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4496
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2482
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15567
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1037
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2882
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3150
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1869
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2872
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1851
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 389
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11195
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: VQSLOD

6-29911005-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911005
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911005
    reference: chr 6
allele count: 7652
allele frequency: 1.235269428211668e-1
allele num: 61946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-40G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-40G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.545G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-40G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.547G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-57G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.545G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-40G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8603
  bin: 2.5e0
  variant carriers: 266
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1092
  bin: 3.25e1
  variant carriers: 333
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 4.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2484
  bin: 2.75e1
  variant carriers: 642
genotype depth: GenotypeDepth
  all individuals: 15231
  bin: 7.5e0
  variant carriers: 1499
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.25e1
  variant carriers: 1304
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 3.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 8595
  bin: 1.75e1
  variant carriers: 1934
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 5.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 13965
  bin: 1.25e1
  variant carriers: 2156
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 6.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 4.25e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3093
  bin: 1.25e1
  variant carriers: 99
genotype quality: GenotypeQuality
  all individuals: 4574
  bin: 1.75e1
  variant carriers: 227
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 8.25e1
  variant carriers: 49
genotype quality: GenotypeQuality
  all individuals: 160
  bin: 8.75e1
  variant carriers: 36
genotype quality: GenotypeQuality
  all individuals: 6528
  bin: 9.75e1
  variant carriers: 6061
genotype quality: GenotypeQuality
  all individuals: 1368
  bin: 2.5e0
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 1524
  bin: 5.25e1
  variant carriers: 129
genotype quality: GenotypeQuality
  all individuals: 437
  bin: 7.25e1
  variant carriers: 59
num of homozygotes: 1052
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

6-29911008-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911008
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911008
    reference: chr 6
allele count: 1
allele frequency: 1.598158920923096e-5
allele num: 62572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.550G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-37G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.548G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.548G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-37G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-37G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-37G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-54G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8874
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1059
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8250
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15379
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13938
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5016
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11230
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 897
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3126
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5634
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2831
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 432
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1881
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1553
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-29911009-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911009
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911009
    reference: chr 6
allele count: 1
allele frequency: 1.600717121270329e-5
allele num: 62472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.551C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.549C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.549C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-36C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-36C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-36C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-36C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-53C>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15429
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8072
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8880
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5185
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3495
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 996
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5626
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3078
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

6-29911011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911011
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911011
    reference: chr 6
allele count: 8083
allele frequency: 1.284647171010807e-1
allele num: 62920
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.551C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.553C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.551C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-34C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-34C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-34C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-34C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-51C>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 192
genotype depth: GenotypeDepth
  all individuals: 15168
  bin: 7.5e0
  variant carriers: 1244
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 1.75e1
  variant carriers: 1920
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 13609
  bin: 1.25e1
  variant carriers: 1993
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.25e1
  variant carriers: 409
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 2.75e1
  variant carriers: 815
genotype depth: GenotypeDepth
  all individuals: 8659
  bin: 2.5e0
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 2.25e1
  variant carriers: 1446
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 4792
  bin: 3.25e1
  variant carriers: 285
genotype quality: GenotypeQuality
  all individuals: 2751
  bin: 1.25e1
  variant carriers: 98
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 3.75e1
  variant carriers: 212
genotype quality: GenotypeQuality
  all individuals: 1321
  bin: 2.5e0
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 3534
  bin: 2.75e1
  variant carriers: 174
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 5.25e1
  variant carriers: 130
genotype quality: GenotypeQuality
  all individuals: 8458
  bin: 7.5e0
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 1101
  bin: 6.75e1
  variant carriers: 102
num of homozygotes: 1176
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum

6-29911011-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911011
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911010
    reference: chr 6
allele count: 1
allele frequency: 1.589319771137953e-5
allele num: 62920
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-29delG
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-29delG
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-29delG
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-46delG
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.556delG
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.556delG
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.558delG
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-29delG
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15168
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8659
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13609
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 481
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7737
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8458
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3552
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 530
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11315
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1449
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4792
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
reference allele: CG
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

6-29911012-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911012
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911012
    reference: chr 6
allele count: 1
allele frequency: 1.585439325237023e-5
allele num: 63074
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-33G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-33G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.552G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-33G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-50G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-33G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.552G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.554G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13677
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4852
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8726
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3956
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1490
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: African
reference allele: G
site quality: FS
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

6-29911012-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911012
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911012
    reference: chr 6
allele count: 1
allele frequency: 1.585439325237023e-5
allele num: 63074
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-33G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.552G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-33G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-50G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.552G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-33G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.554G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-33G>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5964
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13677
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7528
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8788
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2793
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4199
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5480
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8726
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 705
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12423
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum

6-29911013-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911013
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911013
    reference: chr 6
allele count: 2
allele frequency: 3.141295470251932e-5
allele num: 63668
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-32G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.553G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-49G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-32G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-32G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.555G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.553G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-32G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2835
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15361
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6307
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8804
  bin: 2.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13658
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5508
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 742
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 721
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 479
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8811
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3953
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1541
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 935
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
reference allele: G
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ

6-29911014-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911014
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911014
    reference: chr 6
allele count: 1
allele frequency: 1.565533220614941e-5
allele num: 63876
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-31G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-31G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.554G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.556G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-31G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.554G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-31G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-48G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1175
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15454
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6968
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8747
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13590
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2873
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5469
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1581
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 624
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5873
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum

6-29911015-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911015
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911015
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 63850
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.557G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-47G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-30G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-30G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.555G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-30G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.555G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-30G>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2882
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8713
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6862
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1177
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15536
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6797
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13482
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5436
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3955
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 370
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5888
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

6-29911016-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911016
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911016
    reference: chr 6
allele count: 9
allele frequency: 1.408671153545156e-4
allele num: 63890
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.556G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-29G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.556G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-29G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.558G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-29G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-46G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-29G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2881
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8675
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13362
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15635
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7167
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6600
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1893
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2315
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 745
  bin: 9.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1557
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

http://identifiers.org/exac.variant/6-29911017-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911017
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911017
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 63346
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.557A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.557A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-28A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.559A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-28A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-28A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-28A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-45A>C
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8600
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7350
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6520
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2857
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13317
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15711
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1179
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5328
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1617
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1531
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2341
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8375
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 268
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-29911018-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911018
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911018
    reference: chr 6
allele count: 1
allele frequency: 1.559089491736826e-5
allele num: 64140
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-27C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-27C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.560C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-27C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.558C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-44C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.558C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-27C>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7674
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13278
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15713
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6217
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8497
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2966
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 8281
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3894
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13866
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6616
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1744
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 829
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum

6-29911019-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911019
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911019
    reference: chr 6
allele count: 9243
allele frequency: 1.479542835190165e-1
allele num: 62472
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.559T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-26T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-43T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-26T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.559T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.561T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-26T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-26T>C
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.25e1
  variant carriers: 314
genotype depth: GenotypeDepth
  all individuals: 14615
  bin: 7.5e0
  variant carriers: 3943
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 124
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.25e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 1.75e1
  variant carriers: 2523
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 2.5e0
  variant carriers: 2450
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 13283
  bin: 1.25e1
  variant carriers: 3311
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 2.75e1
  variant carriers: 628
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 2.25e1
  variant carriers: 1479
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 4.25e1
  variant carriers: 330
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 5.25e1
  variant carriers: 409
genotype quality: GenotypeQuality
  all individuals: 1637
  bin: 1.25e1
  variant carriers: 566
genotype quality: GenotypeQuality
  all individuals: 1533
  bin: 4.75e1
  variant carriers: 456
genotype quality: GenotypeQuality
  all individuals: 8253
  bin: 9.75e1
  variant carriers: 7596
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 6.75e1
  variant carriers: 271
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 1.75e1
  variant carriers: 859
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 7.75e1
  variant carriers: 240
num of homozygotes: 900
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ

6-29911019-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911019
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911019
    reference: chr 6
allele count: 3
allele frequency: 4.802151363810988e-5
allele num: 62472
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-26T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.559T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.561T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.559T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-26T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-26T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-26T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-43T>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14615
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3282
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 539
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6602
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7345
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1400
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13283
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1306
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2897
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2974
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4459
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5410
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

6-29911020-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911020
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911020
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 67896
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.560G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-42G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-25G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.562G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-25G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-25G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-25G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.560G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 13147
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14468
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5393
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7188
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 12392
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3956
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2014
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4217
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7164
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum

6-29911020-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911020
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911020
    reference: chr 6
allele count: 1
allele frequency: 1.472840815364675e-5
allele num: 67896
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-25G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-25G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-25G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.562G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.560G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-25G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-42G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.560G>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13147
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1369
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3302
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 514
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7880
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14468
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2687
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7188
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7164
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1960
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD

6-29911023-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911023
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911023
    reference: chr 6
allele count: 1
allele frequency: 1.46898962893322e-5
allele num: 68074
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-22C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-22C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.563C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-22C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.565C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-22C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.563C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-39C>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3406
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9141
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1403
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12830
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6392
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14598
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12869
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 316
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7078
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3878
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1951
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4077
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1552
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: South Asian
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD

6-29911025-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911025
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911025
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 68280
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-20G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.567G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.565G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.565G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-37G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-20G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-20G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-20G>C
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9854
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14708
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7442
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12572
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5931
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1429
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3825
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1859
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 803
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6648
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1837
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Other
population: South Asian
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: ClippingRankSum

6-29911026-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911026
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911026
    reference: chr 6
allele count: 1
allele frequency: 1.460664310128246e-5
allele num: 68462
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-19A>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-36A>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-19A>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.566A>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.566A>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-19A>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-19A>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.568A>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1433
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7377
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14736
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3529
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5721
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12481
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10175
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 438
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 644
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2119
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3793
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: East Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum

6-29911027-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911027
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911027
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 68568
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-18C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-18C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.569C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.567C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-35C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-18C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-18C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.567C>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10465
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12400
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7274
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14740
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5062
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 993
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3826
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6450
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13318
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 958
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2141
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQ

6-29911029-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911029
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911029
    reference: chr 6
allele count: 6828
allele frequency: 9.776912282711418e-2
allele num: 69838
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-16G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-16G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.569G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-33G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.569G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.571G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-16G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-16G>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 3.75e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 14340
  bin: 7.5e0
  variant carriers: 2092
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 2.25e1
  variant carriers: 1207
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 4.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 5.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 11948
  bin: 1.25e1
  variant carriers: 1981
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 5.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 1.75e1
  variant carriers: 1645
genotype depth: GenotypeDepth
  all individuals: 6359
  bin: 2.5e0
  variant carriers: 615
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 3919
  bin: 2.75e1
  variant carriers: 677
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1631
  bin: 3.25e1
  variant carriers: 319
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 4.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 1244
  bin: 1.25e1
  variant carriers: 122
genotype quality: GenotypeQuality
  all individuals: 9127
  bin: 6.25e1
  variant carriers: 140
genotype quality: GenotypeQuality
  all individuals: 310
  bin: 8.75e1
  variant carriers: 74
genotype quality: GenotypeQuality
  all individuals: 1520
  bin: 1.75e1
  variant carriers: 236
genotype quality: GenotypeQuality
  all individuals: 3278
  bin: 2.75e1
  variant carriers: 202
genotype quality: GenotypeQuality
  all individuals: 5285
  bin: 7.5e0
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 5.25e1
  variant carriers: 233
genotype quality: GenotypeQuality
  all individuals: 4262
  bin: 3.25e1
  variant carriers: 337
num of homozygotes: 781
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum

6-29911030-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911030
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911030
    reference: chr 6
allele count: 15678
allele frequency: 2.169364881693649e-1
allele num: 72270
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-15C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-15C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-15C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.570C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.570C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-15C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.572C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-32C>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 2.5e0
  variant carriers: 199
genotype depth: GenotypeDepth
  all individuals: 11485
  bin: 1.25e1
  variant carriers: 2535
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 9.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 6776
  bin: 1.75e1
  variant carriers: 2781
genotype depth: GenotypeDepth
  all individuals: 1022
  bin: 3.75e1
  variant carriers: 667
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.25e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 2348
  bin: 3.25e1
  variant carriers: 1272
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 4.25e1
  variant carriers: 402
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 101
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 12914
  bin: 7.5e0
  variant carriers: 1362
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 2.75e1
  variant carriers: 1793
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 10114
  bin: 2.25e1
  variant carriers: 2507
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 4.75e1
  variant carriers: 189
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 5.75e1
  variant carriers: 61
genotype quality: GenotypeQuality
  all individuals: 1796
  bin: 6.75e1
  variant carriers: 274
genotype quality: GenotypeQuality
  all individuals: 1255
  bin: 5.25e1
  variant carriers: 406
genotype quality: GenotypeQuality
  all individuals: 5241
  bin: 7.5e0
  variant carriers: 235
genotype quality: GenotypeQuality
  all individuals: 1610
  bin: 1.25e1
  variant carriers: 228
genotype quality: GenotypeQuality
  all individuals: 4047
  bin: 3.25e1
  variant carriers: 541
genotype quality: GenotypeQuality
  all individuals: 1275
  bin: 4.25e1
  variant carriers: 332
genotype quality: GenotypeQuality
  all individuals: 8912
  bin: 9.75e1
  variant carriers: 8265
genotype quality: GenotypeQuality
  all individuals: 6610
  bin: 6.25e1
  variant carriers: 285
num of homozygotes: 3689
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum

6-29911031-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911031
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911031
    reference: chr 6
allele count: 2
allele frequency: 2.692152375824472e-5
allele num: 74290
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-14G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-14G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.573G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.571G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.571G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-31G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-14G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-14G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6267
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4528
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13071
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2248
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11355
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1028
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10680
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6341
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5488
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3575
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2054
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3414
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4644
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 591
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1149
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8860
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

6-29911033-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911033
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911033
    reference: chr 6
allele count: 1
allele frequency: 1.33571981941068e-5
allele num: 74866
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-12G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.575G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-12G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.573G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-12G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-12G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.573G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-29G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11427
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5921
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13078
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11128
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2255
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3498
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 595
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1645
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5430
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

6-29911034-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911034
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911034
    reference: chr 6
allele count: 3
allele frequency: 3.996483094876509e-5
allele num: 75066
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-11G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.574G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.576G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-11G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.574G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-11G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-28G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-11G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1201
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4538
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5370
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 380
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1545
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3454
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11891
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD

6-29911034-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911034
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911034
    reference: chr 6
allele count: 1
allele frequency: 1.332161031625503e-5
allele num: 75066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.576G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-11G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-11G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.574G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.574G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-11G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-11G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-28G>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1029
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4594
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5761
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11761
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10990
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6172
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13081
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2264
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3340
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2058
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1986
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2828
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 593
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1386
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5370
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: MQ

6-29911035-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911035
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911035
    reference: chr 6
allele count: 11
allele frequency: 1.472359791192612e-4
allele num: 74710
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-10T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-10T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-10T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-10T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.577T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.575T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.575T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-27T>G
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12954
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11047
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11692
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5939
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 6104
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2280
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 642
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2085
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 11483
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9669
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1425
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5344
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD

6-29911036-C-CCCATGACAGATGCAAAATGCCTGAATTTTCTGACTCTTCCCGTCA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911036
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911081
    reference: chr 6
allele count: 2
allele frequency: 2.646692957150041e-5
allele num: 75566
alternate allele: CCCATGACAGATGCAAAATGCCTGAATTTTCTGACTCTTCCCGTCA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12886
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10896
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12353
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11863
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5279
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3389
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2066
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1015
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3307
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4480
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD

6-29911036-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911036
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911036
    reference: chr 6
allele count: 11
allele frequency: 1.455681126432523e-4
allele num: 75566
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-9C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.576C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.576C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-26C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-9C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-9C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.578C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-9C>T
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 543
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12353
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1039
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5313
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10896
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12886
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2337
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4895
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11863
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1351
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3041
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4480
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

6-29911037-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911037
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911037
    reference: chr 6
allele count: 10195
allele frequency: 1.442620631102307e-1
allele num: 70670
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-25G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-8G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.577G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.579G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-8G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-8G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-8G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.577G>C
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12298
  bin: 2.25e1
  variant carriers: 1781
genotype depth: GenotypeDepth
  all individuals: 5602
  bin: 2.75e1
  variant carriers: 1193
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1270
  bin: 3.75e1
  variant carriers: 336
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 7145
  bin: 1.75e1
  variant carriers: 2448
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 5.25e1
  variant carriers: 44
genotype depth: GenotypeDepth
  all individuals: 4132
  bin: 2.5e0
  variant carriers: 1740
genotype depth: GenotypeDepth
  all individuals: 2752
  bin: 3.25e1
  variant carriers: 630
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 4.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 4.25e1
  variant carriers: 157
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 9.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 10389
  bin: 1.25e1
  variant carriers: 2320
genotype depth: GenotypeDepth
  all individuals: 10927
  bin: 7.5e0
  variant carriers: 2676
genotype quality: GenotypeQuality
  all individuals: 1578
  bin: 1.75e1
  variant carriers: 716
genotype quality: GenotypeQuality
  all individuals: 8889
  bin: 6.25e1
  variant carriers: 252
genotype quality: GenotypeQuality
  all individuals: 1052
  bin: 8.25e1
  variant carriers: 158
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 1.25e1
  variant carriers: 533
genotype quality: GenotypeQuality
  all individuals: 1090
  bin: 4.25e1
  variant carriers: 321
genotype quality: GenotypeQuality
  all individuals: 540
  bin: 8.75e1
  variant carriers: 111
genotype quality: GenotypeQuality
  all individuals: 2172
  bin: 3.75e1
  variant carriers: 477
hgvs: c.344-8G>C
num of homozygotes: 1380
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum

6-29911038-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911038
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911038
    reference: chr 6
allele count: 85
allele frequency: 1.04266333014401e-3
allele num: 81522
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.580G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-24G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-7G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-7G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-7G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.578G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-7G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.578G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 12764
  bin: 2.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 1.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 10908
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 2.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 771
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1454
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2595
  bin: 9.75e1
  variant carriers: 76
genotype quality: GenotypeQuality
  all individuals: 626
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10726
  bin: 6.25e1
  variant carriers: 2
hgvs: c.344-7G>A
num of homozygotes: 3
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff

6-29911038-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911038
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911038
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 81522
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-24G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.344-7G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.580G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.344-7G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.578G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.344-7G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.578G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.344-7G>T
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: splice region
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 6783
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1280
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5129
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12764
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5615
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10278
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1800
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10726
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2981
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 374
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2453
  bin: 4.75e1
  variant carriers: 0
hgvs: c.344-7G>T
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-29911047-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911047
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911047
    reference: chr 6
allele count: 1
allele frequency: 1.189881249851265e-5
allele num: 84042
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.346T>C
  hgvsp: ENSP00000379873.1:p.Ser116Pro
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.346T>C
  hgvsp: ENSP00000365998.2:p.Ser116Pro
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.589T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.587T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.346T>C
  hgvsp: ENSP00000366002.5:p.Ser116Pro
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-15T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.346T>C
  hgvsp: ENSP00000366005.5:p.Ser116Pro
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.587T>C
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8976
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2561
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3875
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser116Pro
num of homozygotes: 0
population: Latino
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

6-29911047-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911047
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911047
    reference: chr 6
allele count: 4
allele frequency: 4.759524999405059e-5
allele num: 84042
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-15T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.346T>A
  hgvsp: ENSP00000365998.2:p.Ser116Thr
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.346T>A
  hgvsp: ENSP00000366005.5:p.Ser116Thr
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.346T>A
  hgvsp: ENSP00000379873.1:p.Ser116Thr
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.587T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.589T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.346T>A
  hgvsp: ENSP00000366002.5:p.Ser116Thr
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.587T>A
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10599
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 231
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3875
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1493
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser116Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
population: Latino
population: European (Finnish)
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

6-29911047-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911047
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911047
    reference: chr 6
allele count: 3
allele frequency: 3.569643749553794e-5
allele num: 84042
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.346T>G
  hgvsp: ENSP00000366005.5:p.Ser116Ala
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-15T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.346T>G
  hgvsp: ENSP00000379873.1:p.Ser116Ala
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.346T>G
  hgvsp: ENSP00000366002.5:p.Ser116Ala
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.346T>G
  hgvsp: ENSP00000365998.2:p.Ser116Ala
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.587T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.587T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.589T>G
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8976
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3939
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4926
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6128
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10599
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 811
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4324
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9976
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 668
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1198
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 909
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser116Ala
num of homozygotes: 1
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: T
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-29911048-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911048
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911048
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 83962
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-14C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.347C>A
  hgvsp: ENSP00000366005.5:p.Ser116Tyr
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.588C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.347C>A
  hgvsp: ENSP00000365998.2:p.Ser116Tyr
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.347C>A
  hgvsp: ENSP00000379873.1:p.Ser116Tyr
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.347C>A
  hgvsp: ENSP00000366002.5:p.Ser116Tyr
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.590C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.588C>A
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17521
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4892
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8847
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6201
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3032
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2633
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15313
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 918
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10021
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1142
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3707
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ser116Tyr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/6-29911052-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911052
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911052
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 84850
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-10C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.351C>A
  hgvsp: ENSP00000366002.5:p.His117Gln
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.592C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.351C>A
  hgvsp: ENSP00000379873.1:p.His117Gln
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.592C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.594C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.351C>A
  hgvsp: ENSP00000365998.2:p.His117Gln
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.351C>A
  hgvsp: ENSP00000366005.5:p.His117Gln
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18939
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 836
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 828
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3998
  bin: 6.75e1
  variant carriers: 0
hgvs: p.His117Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: BaseQRankSum

6-29911052-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911052
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911052
    reference: chr 6
allele count: 1
allele frequency: 1.178550383028874e-5
allele num: 84850
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-10C>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.351C>G
  hgvsp: ENSP00000365998.2:p.His117Gln
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.594C>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.351C>G
  hgvsp: ENSP00000366005.5:p.His117Gln
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.592C>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.351C>G
  hgvsp: ENSP00000379873.1:p.His117Gln
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.351C>G
  hgvsp: ENSP00000366002.5:p.His117Gln
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.592C>G
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8132
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4750
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18939
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10380
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6478
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1471
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16712
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 688
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2204
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3998
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2497
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His117Gln
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD

6-29911054-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911054
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911054
    reference: chr 6
allele count: 1
allele frequency: 1.171344234643677e-5
allele num: 85372
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-8C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.353C>T
  hgvsp: ENSP00000365998.2:p.Thr118Ile
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.353C>T
  hgvsp: ENSP00000379873.1:p.Thr118Ile
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.353C>T
  hgvsp: ENSP00000366002.5:p.Thr118Ile
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.594C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.353C>T
  hgvsp: ENSP00000366005.5:p.Thr118Ile
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.594C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.596C>T
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19511
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7852
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6656
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2826
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10249
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3197
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4662
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1705
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 847
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17155
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9783
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4167
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 784
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr118Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
population: East Asian
reference allele: C
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-29911055-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911055
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911055
    reference: chr 6
allele count: 0
allele frequency: 0.0e0
allele num: 85652
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.354C>A
  hgvsp: ENST00000376809.5:c.354C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.595C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.595C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.597C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.354C>A
  hgvsp: ENST00000376802.2:c.354C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.354C>A
  hgvsp: ENST00000376806.5:c.354C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-7C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.354C>A
  hgvsp: ENST00000396634.1:c.354C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 655
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6768
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4631
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10149
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7637
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 848
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17568
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1721
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2295
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9712
  bin: 2.25e1
  variant carriers: 0
hgvs: n.178-7C>A
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS

http://identifiers.org/exac.variant/6-29911056-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911056
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911056
    reference: chr 6
allele count: 15997
allele frequency: 1.936120255615802e-1
allele num: 82624
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.355A>C
  hgvsp: ENSP00000366005.5:p.Ile119Leu
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.598A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-6A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.596A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.355A>C
  hgvsp: ENSP00000379873.1:p.Ile119Leu
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.355A>C
  hgvsp: ENSP00000366002.5:p.Ile119Leu
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.355A>C
  hgvsp: ENSP00000365998.2:p.Ile119Leu
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.596A>C
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15296
  bin: 2.25e1
  variant carriers: 2012
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 2.5e0
  variant carriers: 231
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 1.75e1
  variant carriers: 1802
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 7.5e0
  variant carriers: 577
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 299
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 3.75e1
  variant carriers: 1525
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 3.25e1
  variant carriers: 1808
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 488
genotype depth: GenotypeDepth
  all individuals: 7263
  bin: 2.75e1
  variant carriers: 2023
genotype depth: GenotypeDepth
  all individuals: 6962
  bin: 1.25e1
  variant carriers: 1197
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 1061
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 100
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 4.75e1
  variant carriers: 736
genotype quality: GenotypeQuality
  all individuals: 6289
  bin: 2.25e1
  variant carriers: 223
genotype quality: GenotypeQuality
  all individuals: 2290
  bin: 3.25e1
  variant carriers: 240
genotype quality: GenotypeQuality
  all individuals: 10629
  bin: 6.25e1
  variant carriers: 250
genotype quality: GenotypeQuality
  all individuals: 3699
  bin: 2.5e0
  variant carriers: 133
genotype quality: GenotypeQuality
  all individuals: 1315
  bin: 1.25e1
  variant carriers: 195
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 8.75e1
  variant carriers: 109
genotype quality: GenotypeQuality
  all individuals: 13929
  bin: 9.75e1
  variant carriers: 10528
hgvs: p.Ile119Leu
num of homozygotes: 2957
population: African
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD

6-29911056-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911056
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911056
    reference: chr 6
allele count: 3370
allele frequency: 4.078718048024787e-2
allele num: 82624
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.355A>G
  hgvsp: ENSP00000366002.5:p.Ile119Val
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.355A>G
  hgvsp: ENSP00000365998.2:p.Ile119Val
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.598A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.596A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.596A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178-6A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.355A>G
  hgvsp: ENSP00000366005.5:p.Ile119Val
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.355A>G
  hgvsp: ENSP00000379873.1:p.Ile119Val
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 7263
  bin: 2.75e1
  variant carriers: 509
genotype depth: GenotypeDepth
  all individuals: 6962
  bin: 1.25e1
  variant carriers: 643
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 7.5e0
  variant carriers: 1223
genotype depth: GenotypeDepth
  all individuals: 629
  bin: 5.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 993
  bin: 4.75e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 5.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 3.25e1
  variant carriers: 281
genotype depth: GenotypeDepth
  all individuals: 3591
  bin: 2.5e0
  variant carriers: 1554
genotype depth: GenotypeDepth
  all individuals: 15296
  bin: 2.25e1
  variant carriers: 771
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 1.75e1
  variant carriers: 900
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 8.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 8.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 4.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 3.75e1
  variant carriers: 150
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 9.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 1314
  bin: 7.25e1
  variant carriers: 90
genotype quality: GenotypeQuality
  all individuals: 6289
  bin: 2.25e1
  variant carriers: 416
genotype quality: GenotypeQuality
  all individuals: 2678
  bin: 7.5e0
  variant carriers: 493
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 9.25e1
  variant carriers: 178
genotype quality: GenotypeQuality
  all individuals: 1804
  bin: 2.75e1
  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 1654
  bin: 3.75e1
  variant carriers: 128
genotype quality: GenotypeQuality
  all individuals: 821
  bin: 4.25e1
  variant carriers: 114
hgvs: p.Ile119Val
num of homozygotes: 82
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP

6-29911062-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911062
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911062
    reference: chr 6
allele count: 1
allele frequency: 1.077562983556389e-5
allele num: 92802
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.604A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.361A>G
  hgvsp: ENSP00000366002.5:p.Ile121Val
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.178A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.602A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.361A>G
  hgvsp: ENSP00000366005.5:p.Ile121Val
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.361A>G
  hgvsp: ENSP00000365998.2:p.Ile121Val
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.361A>G
  hgvsp: ENSP00000379873.1:p.Ile121Val
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.602A>G
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 597
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3953
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 934
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4412
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4517
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7423
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6484
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7557
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16934
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2552
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1583
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 950
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3271
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6656
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1667
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6365
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1899
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ile121Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: QD

6-29911063-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911063
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911063
    reference: chr 6
allele count: 7
allele frequency: 8.18464560484531e-5
allele num: 85526
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.362T>A
  hgvsp: ENSP00000366002.5:p.Ile121Lys
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.362T>A
  hgvsp: ENSP00000365998.2:p.Ile121Lys
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.605T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.179T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.603T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.603T>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.362T>A
  hgvsp: ENSP00000379873.1:p.Ile121Lys
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.362T>A
  hgvsp: ENSP00000366005.5:p.Ile121Lys
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15340
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3836
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1229
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12306
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile121Lys
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
reference allele: T
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff

6-29911063-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911063
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911063
    reference: chr 6
allele count: 10269
allele frequency: 1.200687510230807e-1
allele num: 85526
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.362T>G
  hgvsp: ENSP00000379873.1:p.Ile121Arg
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.603T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.603T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.179T>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.362T>G
  hgvsp: ENSP00000366002.5:p.Ile121Arg
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.362T>G
  hgvsp: ENSP00000365998.2:p.Ile121Arg
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.362T>G
  hgvsp: ENSP00000366005.5:p.Ile121Arg
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.605T>G
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 7.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 4.75e1
  variant carriers: 292
genotype depth: GenotypeDepth
  all individuals: 15340
  bin: 2.25e1
  variant carriers: 1835
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 9.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 6.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 5594
  bin: 1.75e1
  variant carriers: 1855
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 6.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 2.5e0
  variant carriers: 1569
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 7.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 5022
  bin: 3.25e1
  variant carriers: 1058
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 8.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 4.25e1
  variant carriers: 451
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 7.5e0
  variant carriers: 1929
genotype depth: GenotypeDepth
  all individuals: 423
  bin: 5.75e1
  variant carriers: 107
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 5.25e1
  variant carriers: 183
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 3.75e1
  variant carriers: 668
genotype depth: GenotypeDepth
  all individuals: 7859
  bin: 2.75e1
  variant carriers: 1478
genotype depth: GenotypeDepth
  all individuals: 6021
  bin: 1.25e1
  variant carriers: 1435
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1038
  bin: 5.25e1
  variant carriers: 258
genotype quality: GenotypeQuality
  all individuals: 2282
  bin: 7.75e1
  variant carriers: 245
genotype quality: GenotypeQuality
  all individuals: 1499
  bin: 2.75e1
  variant carriers: 256
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 1.75e1
  variant carriers: 794
genotype quality: GenotypeQuality
  all individuals: 2432
  bin: 7.5e0
  variant carriers: 661
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 8.75e1
  variant carriers: 124
genotype quality: GenotypeQuality
  all individuals: 10837
  bin: 6.25e1
  variant carriers: 290
hgvs: p.Ile121Arg
num of homozygotes: 1118
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD

6-29911064-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911064
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911064
    reference: chr 6
allele count: 48834
allele frequency: 5.540755196514477e-1
allele num: 88136
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.363A>G
  hgvsp: ENSP00000366002.5:p.Ile121Met
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.604A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.606A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.180A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.604A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.363A>G
  hgvsp: ENSP00000366005.5:p.Ile121Met
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.363A>G
  hgvsp: ENSP00000365998.2:p.Ile121Met
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.363A>G
  hgvsp: ENSP00000379873.1:p.Ile121Met
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5325
  bin: 7.5e0
  variant carriers: 3093
genotype depth: GenotypeDepth
  all individuals: 332
  bin: 6.75e1
  variant carriers: 325
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 9.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 5.25e1
  variant carriers: 1211
genotype depth: GenotypeDepth
  all individuals: 11792
  bin: 2.25e1
  variant carriers: 5060
genotype depth: GenotypeDepth
  all individuals: 6786
  bin: 1.75e1
  variant carriers: 4944
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.75e1
  variant carriers: 3353
genotype depth: GenotypeDepth
  all individuals: 1879
  bin: 4.75e1
  variant carriers: 1804
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.25e1
  variant carriers: 220
genotype depth: GenotypeDepth
  all individuals: 2615
  bin: 2.5e0
  variant carriers: 1851
genotype depth: GenotypeDepth
  all individuals: 834
  bin: 5.75e1
  variant carriers: 807
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 6.25e1
  variant carriers: 527
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 1.25e1
  variant carriers: 3695
genotype depth: GenotypeDepth
  all individuals: 2744
  bin: 4.25e1
  variant carriers: 2544
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 3.25e1
  variant carriers: 4322
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.75e1
  variant carriers: 125
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 9.75e1
  variant carriers: 218
genotype depth: GenotypeDepth
  all individuals: 7412
  bin: 2.75e1
  variant carriers: 4873
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 8.25e1
  variant carriers: 84
genotype quality: GenotypeQuality
  all individuals: 1305
  bin: 4.75e1
  variant carriers: 1052
genotype quality: GenotypeQuality
  all individuals: 1376
  bin: 3.75e1
  variant carriers: 974
genotype quality: GenotypeQuality
  all individuals: 913
  bin: 9.25e1
  variant carriers: 762
genotype quality: GenotypeQuality
  all individuals: 1517
  bin: 1.75e1
  variant carriers: 1163
genotype quality: GenotypeQuality
  all individuals: 1270
  bin: 1.25e1
  variant carriers: 828
genotype quality: GenotypeQuality
  all individuals: 3942
  bin: 2.5e0
  variant carriers: 319
genotype quality: GenotypeQuality
  all individuals: 712
  bin: 5.75e1
  variant carriers: 587
hgvs: p.Ile121Met
num of homozygotes: 15619
population: African
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: QD

6-29911068-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911068
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911068
    reference: chr 6
allele count: 4
allele frequency: 4.05926527298559e-5
allele num: 98540
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.608T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.367T>C
  hgvsp: ENSP00000366002.5:p.Tyr123His
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.367T>C
  hgvsp: ENSP00000379873.1:p.Tyr123His
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.367T>C
  hgvsp: ENSP00000365998.2:p.Tyr123His
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.610T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.367T>C
  hgvsp: ENSP00000366005.5:p.Tyr123His
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.608T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.184T>C
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1248
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12291
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1815
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6170
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7608
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 523
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5655
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5390
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5613
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 861
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1213
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11098
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4549
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2350
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1864
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Tyr123His
num of homozygotes: 1
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/6-29911069-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911069
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911069
    reference: chr 6
allele count: 16
allele frequency: 1.6409246610465e-4
allele num: 97506
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.368A>C
  hgvsp: ENSP00000379873.1:p.Tyr123Ser
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.609A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.368A>C
  hgvsp: ENSP00000366005.5:p.Tyr123Ser
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.368A>C
  hgvsp: ENSP00000365998.2:p.Tyr123Ser
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.611A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.185A>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.368A>C
  hgvsp: ENSP00000366002.5:p.Tyr123Ser
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.609A>C
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7558
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4518
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16853
  bin: 9.75e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 9594
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2147
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Tyr123Ser
num of homozygotes: 0
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

6-29911069-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911069
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911069
    reference: chr 6
allele count: 66
allele frequency: 6.768814226816812e-4
allele num: 97506
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.609A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.609A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.185A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.368A>G
  hgvsp: ENSP00000366002.5:p.Tyr123Cys
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.368A>G
  hgvsp: ENSP00000379873.1:p.Tyr123Cys
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.611A>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.368A>G
  hgvsp: ENSP00000366005.5:p.Tyr123Cys
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.368A>G
  hgvsp: ENSP00000365998.2:p.Tyr123Cys
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 2.5e0
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7558
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 1.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 3.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2057
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4518
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 470
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3332
  bin: 7.5e0
  variant carriers: 3
hgvs: p.Tyr123Cys
num of homozygotes: 1
population: African
population: East Asian
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum

6-29911069-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911069
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911069
    reference: chr 6
allele count: 15951
allele frequency: 1.635899329272045e-1
allele num: 97506
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.368A>T
  hgvsp: ENSP00000365998.2:p.Tyr123Phe
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.368A>T
  hgvsp: ENSP00000366005.5:p.Tyr123Phe
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.185A>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.368A>T
  hgvsp: ENSP00000366002.5:p.Tyr123Phe
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.609A>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.368A>T
  hgvsp: ENSP00000379873.1:p.Tyr123Phe
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.611A>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.609A>T
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 5.25e1
  variant carriers: 595
genotype depth: GenotypeDepth
  all individuals: 3799
  bin: 2.5e0
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 3.75e1
  variant carriers: 1600
genotype depth: GenotypeDepth
  all individuals: 5962
  bin: 1.75e1
  variant carriers: 1528
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 8.25e1
  variant carriers: 46
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 9.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 391
  bin: 6.75e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 5312
  bin: 7.5e0
  variant carriers: 374
genotype depth: GenotypeDepth
  all individuals: 12268
  bin: 2.25e1
  variant carriers: 1731
genotype depth: GenotypeDepth
  all individuals: 2865
  bin: 4.25e1
  variant carriers: 1263
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 8.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1915
  bin: 4.75e1
  variant carriers: 906
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 1.25e1
  variant carriers: 909
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 9.75e1
  variant carriers: 92
genotype depth: GenotypeDepth
  all individuals: 926
  bin: 5.75e1
  variant carriers: 430
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 272
genotype depth: GenotypeDepth
  all individuals: 7558
  bin: 2.75e1
  variant carriers: 1879
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 7.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 5679
  bin: 3.25e1
  variant carriers: 1825
genotype quality: GenotypeQuality
  all individuals: 1276
  bin: 9.25e1
  variant carriers: 134
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 2.5e0
  variant carriers: 119
genotype quality: GenotypeQuality
  all individuals: 2243
  bin: 7.75e1
  variant carriers: 180
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 8.25e1
  variant carriers: 156
genotype quality: GenotypeQuality
  all individuals: 1394
  bin: 5.25e1
  variant carriers: 221
genotype quality: GenotypeQuality
  all individuals: 1587
  bin: 7.25e1
  variant carriers: 128
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 2.75e1
  variant carriers: 170
hgvs: p.Tyr123Phe
num of homozygotes: 2909
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum

6-29911071-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911071
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911071
    reference: chr 6
allele count: 1
allele frequency: 1.010345942450695e-5
allele num: 98976
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.370G>T
  hgvsp: ENSP00000379873.1:p.Gly124Cys
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.370G>T
  hgvsp: ENSP00000366002.5:p.Gly124Cys
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.611G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.187G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.613G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.611G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.370G>T
  hgvsp: ENSP00000366005.5:p.Gly124Cys
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.370G>T
  hgvsp: ENSP00000365998.2:p.Gly124Cys
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5739
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1287
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5417
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4042
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5422
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1856
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2820
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12795
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7791
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5467
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10690
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1247
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2384
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 730
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2343
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gly124Cys
num of homozygotes: 0
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

6-29911072-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911072
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911072
    reference: chr 6
allele count: 1
allele frequency: 1.009896990506968e-5
allele num: 99020
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.371G>T
  hgvsp: ENSP00000366002.5:p.Gly124Val
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.371G>T
  hgvsp: ENSP00000379873.1:p.Gly124Val
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.614G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.371G>T
  hgvsp: ENSP00000366005.5:p.Gly124Val
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.612G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.371G>T
  hgvsp: ENSP00000365998.2:p.Gly124Val
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.612G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.188G>T
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5453
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3761
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5274
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12956
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2818
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7802
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4046
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5460
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1286
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5758
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 896
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 709
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2348
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1355
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1472
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 580
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2381
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly124Val
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP

6-29911073-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911073
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911073
    reference: chr 6
allele count: 40
allele frequency: 4.036326942482341e-4
allele num: 99100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.613C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.372C>T
  hgvsp: ENST00000376806.5:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.372C>T
  hgvsp: ENST00000396634.1:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.372C>T
  hgvsp: ENST00000376802.2:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.613C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.189C>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.372C>T
  hgvsp: ENST00000376809.5:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.615C>T
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5425
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 13188
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5789
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2816
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1861
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5040
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 7844
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3770
  bin: 3.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2379
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10706
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 2342
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1466
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4242
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3665
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly124Gly
num of homozygotes: 1
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

6-29911077-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911077
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911077
    reference: chr 6
allele count: 505
allele frequency: 5.072114418866257e-3
allele num: 99564
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.376G>C
  hgvsp: ENSP00000366002.5:p.Asp126His
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.376G>C
  hgvsp: ENSP00000379873.1:p.Asp126His
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.376G>C
  hgvsp: ENSP00000366005.5:p.Asp126His
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.617G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.376G>C
  hgvsp: ENSP00000365998.2:p.Asp126His
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.617G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.193G>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.619G>C
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 5.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 3.75e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 5885
  bin: 3.25e1
  variant carriers: 69
genotype depth: GenotypeDepth
  all individuals: 5093
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 3645
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 370
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2815
  bin: 4.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 8043
  bin: 2.75e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 4.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 6.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 1.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 14436
  bin: 2.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 5985
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 5.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 401
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 9.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2252
  bin: 3.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 2.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 4338
  bin: 6.75e1
  variant carriers: 3
hgvs: p.Asp126His
num of homozygotes: 31
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum

6-29911085-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911085
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911085
    reference: chr 6
allele count: 1
allele frequency: 9.97446536865624e-6
allele num: 100256
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.384G>A
  hgvsp: ENST00000396634.1:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.625G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.201G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.625G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.384G>A
  hgvsp: ENST00000376809.5:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.384G>A
  hgvsp: ENST00000376802.2:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.627G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.384G>A
  hgvsp: ENST00000376806.5:c.384G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8463
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2972
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4615
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2825
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1862
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6162
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3826
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15580
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 900
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3170
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14809
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 410
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3076
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2527
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly128Gly
num of homozygotes: 0
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

6-29911086-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911086
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911086
    reference: chr 6
allele count: 34978
allele frequency: 3.475556438791733e-1
allele num: 100640
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.628T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.385T>C
  hgvsp: ENSP00000366005.5:p.Ser129Pro
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.626T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.385T>C
  hgvsp: ENSP00000365998.2:p.Ser129Pro
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.202T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.385T>C
  hgvsp: ENSP00000379873.1:p.Ser129Pro
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.626T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.385T>C
  hgvsp: ENSP00000366002.5:p.Ser129Pro
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3033
  bin: 4.75e1
  variant carriers: 2265
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 7.25e1
  variant carriers: 595
genotype depth: GenotypeDepth
  all individuals: 7201
  bin: 2.75e1
  variant carriers: 3285
genotype depth: GenotypeDepth
  all individuals: 2732
  bin: 2.5e0
  variant carriers: 194
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 4.25e1
  variant carriers: 2831
genotype depth: GenotypeDepth
  all individuals: 4917
  bin: 3.75e1
  variant carriers: 3173
genotype depth: GenotypeDepth
  all individuals: 4956
  bin: 7.5e0
  variant carriers: 698
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 1.75e1
  variant carriers: 2136
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 6.25e1
  variant carriers: 1014
genotype depth: GenotypeDepth
  all individuals: 469
  bin: 7.75e1
  variant carriers: 403
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 8.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 6075
  bin: 3.25e1
  variant carriers: 3259
genotype depth: GenotypeDepth
  all individuals: 1711
  bin: 5.75e1
  variant carriers: 1366
genotype depth: GenotypeDepth
  all individuals: 2253
  bin: 5.25e1
  variant carriers: 1738
genotype depth: GenotypeDepth
  all individuals: 9378
  bin: 2.25e1
  variant carriers: 2983
genotype depth: GenotypeDepth
  all individuals: 337
  bin: 8.25e1
  variant carriers: 307
genotype depth: GenotypeDepth
  all individuals: 4179
  bin: 1.25e1
  variant carriers: 1256
genotype depth: GenotypeDepth
  all individuals: 579
  bin: 9.75e1
  variant carriers: 461
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 9.25e1
  variant carriers: 152
genotype depth: GenotypeDepth
  all individuals: 961
  bin: 6.75e1
  variant carriers: 823
genotype quality: GenotypeQuality
  all individuals: 1296
  bin: 8.25e1
  variant carriers: 298
genotype quality: GenotypeQuality
  all individuals: 775
  bin: 5.25e1
  variant carriers: 275
genotype quality: GenotypeQuality
  all individuals: 559
  bin: 1.25e1
  variant carriers: 214
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 4.75e1
  variant carriers: 273
genotype quality: GenotypeQuality
  all individuals: 1060
  bin: 9.25e1
  variant carriers: 313
genotype quality: GenotypeQuality
  all individuals: 1178
  bin: 2.5e0
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.75e1
  variant carriers: 217
hgvs: p.Ser129Pro
num of homozygotes: 7157
population: African
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: DP

6-29911092-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911092
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911092
    reference: chr 6
allele count: 16240
allele frequency: 1.63831890724936e-1
allele num: 99126
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.634G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.208G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.391G>T
  hgvsp: ENSP00000366002.5:p.Gly131Trp
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.632G>T
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.391G>T
  hgvsp: ENSP00000365998.2:p.Gly131Trp
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.391G>T
  hgvsp: ENSP00000379873.1:p.Gly131Trp
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.391G>T
  hgvsp: ENSP00000366005.5:p.Gly131Trp
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.632G>T
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3177
  bin: 4.75e1
  variant carriers: 573
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 2.5e0
  variant carriers: 734
genotype depth: GenotypeDepth
  all individuals: 4322
  bin: 1.25e1
  variant carriers: 2354
genotype depth: GenotypeDepth
  all individuals: 893
  bin: 6.75e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 2339
  bin: 5.25e1
  variant carriers: 373
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 7.75e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 7653
  bin: 2.25e1
  variant carriers: 2723
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 9.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 4.25e1
  variant carriers: 936
genotype depth: GenotypeDepth
  all individuals: 1673
  bin: 5.75e1
  variant carriers: 211
genotype depth: GenotypeDepth
  all individuals: 7156
  bin: 3.25e1
  variant carriers: 1973
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 3.75e1
  variant carriers: 1377
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 7.5e0
  variant carriers: 2549
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 8108
  bin: 2.75e1
  variant carriers: 2682
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 7.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 8.25e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 4771
  bin: 1.75e1
  variant carriers: 2349
genotype depth: GenotypeDepth
  all individuals: 636
  bin: 9.75e1
  variant carriers: 104
genotype depth: GenotypeDepth
  all individuals: 1232
  bin: 6.25e1
  variant carriers: 102
genotype quality: GenotypeQuality
  all individuals: 2722
  bin: 2.5e0
  variant carriers: 287
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 3.75e1
  variant carriers: 788
genotype quality: GenotypeQuality
  all individuals: 971
  bin: 5.25e1
  variant carriers: 536
genotype quality: GenotypeQuality
  all individuals: 1428
  bin: 8.75e1
  variant carriers: 339
genotype quality: GenotypeQuality
  all individuals: 1715
  bin: 3.25e1
  variant carriers: 848
genotype quality: GenotypeQuality
  all individuals: 22604
  bin: 9.75e1
  variant carriers: 8843
genotype quality: GenotypeQuality
  all individuals: 5773
  bin: 6.25e1
  variant carriers: 427
hgvs: p.Gly131Trp
num of homozygotes: 1396
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: African
population: Latino
reference allele: G
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

6-29911093-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911093
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911093
    reference: chr 6
allele count: 1
allele frequency: 9.346493195752953e-6
allele num: 106992
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.392G>A
  hgvsp: ENSP00000366005.5:p.Gly131Glu
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.209G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.392G>A
  hgvsp: ENSP00000366002.5:p.Gly131Glu
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.633G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.392G>A
  hgvsp: ENSP00000379873.1:p.Gly131Glu
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.392G>A
  hgvsp: ENSP00000365998.2:p.Gly131Glu
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.635G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.633G>A
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4694
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3986
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1644
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5522
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4584
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4292
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6975
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1485
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1179
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1441
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1861
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1069
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly131Glu
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD

6-29911094-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911094
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911094
    reference: chr 6
allele count: 1
allele frequency: 9.342825644187828e-6
allele num: 107034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.634G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.393G>A
  hgvsp: ENST00000376809.5:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.210G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.636G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.393G>A
  hgvsp: ENST00000396634.1:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.393G>A
  hgvsp: ENST00000376802.2:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.634G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.393G>A
  hgvsp: ENST00000376806.5:c.393G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4293
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3983
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4692
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3097
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6976
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8207
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4570
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5523
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2780
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3362
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1023
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8929
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Gly131Gly
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/6-29911095-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911095
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911095
    reference: chr 6
allele count: 1
allele frequency: 9.366102202907238e-6
allele num: 106768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.394C>A
  hgvsp: ENSP00000366002.5:p.Arg132Ser
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.637C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.394C>A
  hgvsp: ENSP00000366005.5:p.Arg132Ser
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.635C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.394C>A
  hgvsp: ENSP00000379873.1:p.Arg132Ser
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.394C>A
  hgvsp: ENSP00000365998.2:p.Arg132Ser
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.211C>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.635C>A
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7666
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8181
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3099
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1645
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3996
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4294
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2194
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2271
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8094
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2226
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3318
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3587
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1622
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1124
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 1
hgvs: p.Arg132Ser
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: DP

6-29911096-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911096
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911096
    reference: chr 6
allele count: 6
allele frequency: 5.616189602560982e-5
allele num: 106834
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.395G>A
  hgvsp: ENSP00000365998.2:p.Arg132His
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.638G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.212G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.395G>A
  hgvsp: ENSP00000366002.5:p.Arg132His
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.395G>A
  hgvsp: ENSP00000379873.1:p.Arg132His
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.636G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.636G>A
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.395G>A
  hgvsp: ENSP00000366005.5:p.Arg132His
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7813
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8209
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 634
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3101
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4628
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7003
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1643
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2272
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5529
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2755
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 956
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 934
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2430
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2103
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg132His
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

6-29911098-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911098
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911098
    reference: chr 6
allele count: 4523
allele frequency: 4.237478686128651e-2
allele num: 106738
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.214T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.397T>C
  hgvsp: ENSP00000365998.2:p.Phe133Leu
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.397T>C
  hgvsp: ENSP00000366005.5:p.Phe133Leu
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.640T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.638T>C
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.397T>C
  hgvsp: ENSP00000366002.5:p.Phe133Leu
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.397T>C
  hgvsp: ENSP00000379873.1:p.Phe133Leu
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.638T>C
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2316
  bin: 5.25e1
  variant carriers: 310
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.25e1
  variant carriers: 119
genotype depth: GenotypeDepth
  all individuals: 4297
  bin: 1.75e1
  variant carriers: 244
genotype depth: GenotypeDepth
  all individuals: 920
  bin: 6.75e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 3969
  bin: 7.5e0
  variant carriers: 71
genotype depth: GenotypeDepth
  all individuals: 5511
  bin: 3.75e1
  variant carriers: 425
genotype depth: GenotypeDepth
  all individuals: 2176
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 3139
  bin: 4.75e1
  variant carriers: 385
genotype depth: GenotypeDepth
  all individuals: 4480
  bin: 1.25e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 9.75e1
  variant carriers: 108
genotype depth: GenotypeDepth
  all individuals: 8199
  bin: 2.75e1
  variant carriers: 370
genotype depth: GenotypeDepth
  all individuals: 4275
  bin: 4.25e1
  variant carriers: 418
genotype depth: GenotypeDepth
  all individuals: 6942
  bin: 3.25e1
  variant carriers: 425
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 8.75e1
  variant carriers: 66
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 5.75e1
  variant carriers: 248
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 7.75e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 7983
  bin: 2.25e1
  variant carriers: 327
genotype depth: GenotypeDepth
  all individuals: 1253
  bin: 6.25e1
  variant carriers: 207
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 9.25e1
  variant carriers: 39
genotype quality: GenotypeQuality
  all individuals: 1410
  bin: 2.75e1
  variant carriers: 19
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 780
  bin: 1.75e1
  variant carriers: 18
genotype quality: GenotypeQuality
  all individuals: 2250
  bin: 9.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 3856
  bin: 2.25e1
  variant carriers: 14
genotype quality: GenotypeQuality
  all individuals: 1871
  bin: 7.5e0
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 4.25e1
  variant carriers: 17
hgvs: p.Phe133Leu
num of homozygotes: 430
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

6-29911103-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29911103
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29911103
    reference: chr 6
allele count: 530
allele frequency: 4.980922128451403e-3
allele num: 106406
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366005
  ensembl transcript: ENST00000376809
  gene symbol: HLA-A
  hgvsc: ENST00000376809.5:c.402C>G
  hgvsp: ENST00000376809.5:c.402C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000365998
  ensembl transcript: ENST00000376802
  gene symbol: HLA-A
  hgvsc: ENST00000376802.2:c.402C>G
  hgvsp: ENST00000376802.2:c.402C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000461903
  gene symbol: HLA-A
  hgvsc: ENST00000461903.1:n.643C>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000379873
  ensembl transcript: ENST00000396634
  gene symbol: HLA-A
  hgvsc: ENST00000396634.1:c.402C>G
  hgvsp: ENST00000396634.1:c.402C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000496081
  gene symbol: HLA-A
  hgvsc: ENST00000496081.1:n.219C>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000479320
  gene symbol: HLA-A
  hgvsc: ENST00000479320.1:n.643C>G
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000206503
  ensembl protein: ENSP00000366002
  ensembl transcript: ENST00000376806
  gene symbol: HLA-A
  hgvsc: ENST00000376806.5:c.402C>G
  hgvsp: ENST00000376806.5:c.402C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4931
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000206503
  ensembl transcript: ENST00000495183
  gene symbol: HLA-A
  hgvsc: ENST00000495183.1:n.645C>G
  variant of: http://identifiers.org/hgnc/4931
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 471
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3913
  bin: 1.75e1
  variant carriers: 102
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2077
  bin: 2.5e0
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 8331
  bin: 2.25e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 4095
  bin: 7.5e0
  variant carriers: 122
genotype depth: GenotypeDepth
  all individuals: 4399
  bin: 1.25e1
  variant carriers: 142
genotype depth: GenotypeDepth
  all individuals: 1690
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 4.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 2319
  bin: 5.25e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 306
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8255
  bin: 2.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6993
  bin: 3.25e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4269
  bin: 4.25e1
  variant carriers: 23
hgvs: p.Leu134Leu
num of homozygotes: 4
reference allele: C

GenotypeQuality
all individuals: 3814
bin: 1.75e1
variant carriers: 2328

GenotypeQuality
all individuals: 903
bin: 7.75e1
variant carriers: 474

GenotypeQuality
all individuals: 1925
bin: 4.75e1
variant carriers: 976

GenotypeQuality
all individuals: 19560
bin: 9.75e1
variant carriers: 14368

GenotypeQuality
all individuals: 1988
bin: 2.75e1
variant carriers: 1069

GenotypeQuality
all individuals: 3640
bin: 2.5e0
variant carriers: 339

GenotypeQuality
all individuals: 787
bin: 8.25e1
variant carriers: 449

GenotypeQuality
all individuals: 1437
bin: 6.25e1
variant carriers: 650

GenotypeQuality
all individuals: 3154
bin: 3.25e1
variant carriers: 1583

GenotypeQuality
all individuals: 1548
bin: 5.25e1
variant carriers: 749

GenotypeQuality
all individuals: 938
bin: 5.75e1
variant carriers: 525

GenotypeQuality
all individuals: 2574
bin: 3.75e1
variant carriers: 1232

European (Finnish)
type: Population
allele count: 654
allele frequency: 2.597299444003177e-1
allele num: 2518
num of homozygotes: 89

African
type: Population
allele count: 1710
allele frequency: 3.308823529411765e-1
allele num: 5168
num of homozygotes: 221

East Asian
type: Population
allele count: 1270
allele frequency: 2.435749904104335e-1
allele num: 5214
num of homozygotes: 51

South Asian
type: Population
allele count: 4659
allele frequency: 3.731976930471003e-1
allele num: 12484
num of homozygotes: 800

European (Non-Finnish)
type: Population
allele count: 12391
allele frequency: 3.883352137395011e-1
allele num: 31908
num of homozygotes: 2369

Other
type: Population
allele count: 181
allele frequency: 3.562992125984252e-1
allele num: 508
num of homozygotes: 31

Latino
type: Population
allele count: 2067
allele frequency: 3.731046931407942e-1
allele num: 5540
num of homozygotes: 322

DP
type: SiteQuality
SIO_000300: 7.30443e5

VQSLOD
type: SiteQuality
SIO_000300: 4.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.4e-1

MQ
type: SiteQuality
SIO_000300: 5.102e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

FS
type: SiteQuality
SIO_000300: 8.43e-1

QD
type: SiteQuality
SIO_000300: 3.147e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.497000000000001e-1

GenotypeQuality
all individuals: 1345
bin: 4.25e1
variant carriers: 739

GenotypeQuality
all individuals: 765
bin: 7.25e1
variant carriers: 497

GenotypeQuality
all individuals: 709
bin: 9.25e1
variant carriers: 469

GenotypeQuality
all individuals: 1940
bin: 1.25e1
variant carriers: 648

GenotypeQuality
all individuals: 3814
bin: 1.75e1
variant carriers: 1408

GenotypeQuality
all individuals: 2574
bin: 3.75e1
variant carriers: 1329

GenotypeQuality
all individuals: 19560
bin: 9.75e1
variant carriers: 15437

GenotypeQuality
all individuals: 903
bin: 7.75e1
variant carriers: 558

GenotypeQuality
all individuals: 1437
bin: 6.25e1
variant carriers: 848

GenotypeQuality
all individuals: 1174
bin: 6.75e1
variant carriers: 731

GenotypeQuality
all individuals: 1548
bin: 5.25e1
variant carriers: 871

GenotypeQuality
all individuals: 589
bin: 8.75e1
variant carriers: 364

African
type: Population
allele count: 2432
allele frequency: 4.705882352941176e-1
allele num: 5168
num of homozygotes: 547

East Asian
type: Population
allele count: 3744
allele frequency: 7.180667433831991e-1
allele num: 5214
num of homozygotes: 1250

Other
type: Population
allele count: 234
allele frequency: 4.606299212598425e-1
allele num: 508
num of homozygotes: 51

European (Non-Finnish)
type: Population
allele count: 13216
allele frequency: 4.141907985458192e-1
allele num: 31908
num of homozygotes: 2959

Latino
type: Population
allele count: 2879
allele frequency: 5.196750902527075e-1
allele num: 5540
num of homozygotes: 694

European (Finnish)
type: Population
allele count: 969
allele frequency: 3.848292295472597e-1
allele num: 2518
num of homozygotes: 197

South Asian
type: Population
allele count: 6616
allele frequency: 5.299583466837552e-1
allele num: 12484
num of homozygotes: 1655

DP
type: SiteQuality
SIO_000300: 7.30443e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.497000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

QD
type: SiteQuality
SIO_000300: 3.147e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.74e-1

FS
type: SiteQuality
SIO_000300: 8.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQ
type: SiteQuality
SIO_000300: 5.102e1

VQSLOD
type: SiteQuality
SIO_000300: 4.959e1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.4e-1

GenotypeQuality
all individuals: 686
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 523
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3098
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2086
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 596
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3848
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1339
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3008
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 503
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.092911047878263e-5
allele num: 32332
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5270
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12476
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.891789632992811e-4
allele num: 5286
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5506
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2622
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

DP
type: SiteQuality
SIO_000300: 7.0374e5

ClippingRankSum
type: SiteQuality
SIO_000300: 5.4e-1

MQ
type: SiteQuality
SIO_000300: 5.395e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

FS
type: SiteQuality
SIO_000300: 5.119e0

QD
type: SiteQuality
SIO_000300: 2.165e1

VQSLOD
type: SiteQuality
SIO_000300: -7.023e-1

GenotypeQuality
all individuals: 2249
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 685
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4600
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5771
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4580
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9066
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3140
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3848
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 506
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2582
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32204
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5276
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5454
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

QD
type: SiteQuality
SIO_000300: 3.217e1

DP
type: SiteQuality
SIO_000300: 7.01051e5

ClippingRankSum
type: SiteQuality
SIO_000300: -1.92e0

VQSLOD
type: SiteQuality
SIO_000300: -9.671e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.712e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.52e0

MQRankSum
type: SiteQuality
SIO_000300: -6.840000000000001e-1

GenotypeQuality
all individuals: 3731
bin: 1.75e1
variant carriers: 495

GenotypeQuality
all individuals: 296
bin: 8.25e1
variant carriers: 80

GenotypeQuality
all individuals: 2027
bin: 4.75e1
variant carriers: 206

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 49

GenotypeQuality
all individuals: 3306
bin: 3.75e1
variant carriers: 344

GenotypeQuality
all individuals: 1443
bin: 4.25e1
variant carriers: 178

GenotypeQuality
all individuals: 1236
bin: 2.5e0
variant carriers: 63

GenotypeQuality
all individuals: 1834
bin: 6.25e1
variant carriers: 152

GenotypeQuality
all individuals: 3234
bin: 2.75e1
variant carriers: 255

GenotypeQuality
all individuals: 345
bin: 5.75e1
variant carriers: 100

GenotypeQuality
all individuals: 1309
bin: 5.25e1
variant carriers: 188

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 75

South Asian
type: Population
allele count: 2390
allele frequency: 1.918138041733547e-1
allele num: 12460
num of homozygotes: 225

Other
type: Population
allele count: 92
allele frequency: 1.755725190839695e-1
allele num: 524
num of homozygotes: 6

African
type: Population
allele count: 1544
allele frequency: 2.955589586523736e-1
allele num: 5224
num of homozygotes: 222

Latino
type: Population
allele count: 1220
allele frequency: 2.223842508202698e-1
allele num: 5486
num of homozygotes: 147

European (Finnish)
type: Population
allele count: 402
allele frequency: 1.56786271450858e-1
allele num: 2564
num of homozygotes: 58

European (Non-Finnish)
type: Population
allele count: 5350
allele frequency: 1.670935099006809e-1
allele num: 32018
num of homozygotes: 720

East Asian
type: Population
allele count: 1145
allele frequency: 2.177634081399772e-1
allele num: 5258
num of homozygotes: 88

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

MQ
type: SiteQuality
SIO_000300: 5.362e1

DP
type: SiteQuality
SIO_000300: 7.04334e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.16e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.443e-1

QD
type: SiteQuality
SIO_000300: 2.78e1

GenotypeQuality
all individuals: 2027
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1834
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8591
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3731
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 345
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1443
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9944
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 466
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 829
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12460
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32018
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2564
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5224
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 524
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5258
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.443e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.04334e5

QD
type: SiteQuality
SIO_000300: 2.78e1

MQRankSum
type: SiteQuality
SIO_000300: 1.24e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.517e0

VQSLOD
type: SiteQuality
SIO_000300: 1.16e1

MQ
type: SiteQuality
SIO_000300: 5.362e1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.51e-1

GenotypeQuality
all individuals: 484
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4016
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 950
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9246
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1314
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4401
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5665
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4055
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 483
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 172
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12388
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5198
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5090
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.101e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQRankSum
type: SiteQuality
SIO_000300: -1.159e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.09e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

QD
type: SiteQuality
SIO_000300: 3.091e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.90811e5

VQSLOD
type: SiteQuality
SIO_000300: 2.9e-2

GenotypeQuality
all individuals: 1537
bin: 4.25e1
variant carriers: 111

GenotypeQuality
all individuals: 2303
bin: 4.75e1
variant carriers: 160

GenotypeQuality
all individuals: 3568
bin: 2.75e1
variant carriers: 173

GenotypeQuality
all individuals: 1060
bin: 6.75e1
variant carriers: 102

GenotypeQuality
all individuals: 8188
bin: 7.5e0
variant carriers: 81

GenotypeQuality
all individuals: 4851
bin: 3.25e1
variant carriers: 285

GenotypeQuality
all individuals: 9057
bin: 2.25e1
variant carriers: 300

GenotypeQuality
all individuals: 198
bin: 9.25e1
variant carriers: 45

GenotypeQuality
all individuals: 494
bin: 5.75e1
variant carriers: 69

GenotypeQuality
all individuals: 3647
bin: 3.75e1
variant carriers: 213

GenotypeQuality
all individuals: 2188
bin: 6.25e1
variant carriers: 103

GenotypeQuality
all individuals: 517
bin: 7.75e1
variant carriers: 78

African
type: Population
allele count: 87
allele frequency: 1.753325272067715e-2
allele num: 4962
num of homozygotes: 5

European (Finnish)
type: Population
allele count: 172
allele frequency: 6.952303961196443e-2
allele num: 2474
num of homozygotes: 14

European (Non-Finnish)
type: Population
allele count: 2863
allele frequency: 9.213490377807813e-2
allele num: 31074
num of homozygotes: 279

Latino
type: Population
allele count: 294
allele frequency: 5.717619603267211e-2
allele num: 5142
num of homozygotes: 22

East Asian
type: Population
allele count: 1809
allele frequency: 3.430034129692833e-1
allele num: 5274
num of homozygotes: 418

South Asian
type: Population
allele count: 2366
allele frequency: 1.890682435672047e-1
allele num: 12514
num of homozygotes: 309

Other
type: Population
allele count: 61
allele frequency: 1.205533596837945e-1
allele num: 506
num of homozygotes: 5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.444e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.148e1

DP
type: SiteQuality
SIO_000300: 6.92002e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.37e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.6e-2

QD
type: SiteQuality
SIO_000300: 2.779e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

MQ
type: SiteQuality
SIO_000300: 5.044e1

GenotypeQuality
all individuals: 197
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 284
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8786
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3671
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4383
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1318
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3907
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 233
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 546
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3703
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5300
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12586
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.180661577608142e-5
allele num: 31440
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5202
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

DP
type: SiteQuality
SIO_000300: 6.93316e5

QD
type: SiteQuality
SIO_000300: 3.266e1

MQ
type: SiteQuality
SIO_000300: 4.754e1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.788e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.31e-1

GenotypeQuality
all individuals: 11417
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1417
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1328
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8748
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3902
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3891
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4372
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1857
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 675
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 670
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2756
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5196
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5284
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12566
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.187149413564508e-5
allele num: 31376
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.364e1

DP
type: SiteQuality
SIO_000300: 6.94521e5

BaseQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

FS
type: SiteQuality
SIO_000300: 2.762e0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.79e-2

QD
type: SiteQuality
SIO_000300: 2.89e1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

GenotypeQuality
all individuals: 2667
bin: 1.75e1
variant carriers: 226

GenotypeQuality
all individuals: 530
bin: 7.75e1
variant carriers: 79

GenotypeQuality
all individuals: 1449
bin: 4.25e1
variant carriers: 111

GenotypeQuality
all individuals: 3966
bin: 6.25e1
variant carriers: 102

GenotypeQuality
all individuals: 11315
bin: 2.25e1
variant carriers: 301

GenotypeQuality
all individuals: 1888
bin: 4.75e1
variant carriers: 160

GenotypeQuality
all individuals: 438
bin: 7.25e1
variant carriers: 58

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 47

GenotypeQuality
all individuals: 208
bin: 5.75e1
variant carriers: 69

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 36

GenotypeQuality
all individuals: 342
bin: 8.25e1
variant carriers: 49

GenotypeQuality
all individuals: 6529
bin: 9.75e1
variant carriers: 6061

East Asian
type: Population
allele count: 1930
allele frequency: 3.556948028013269e-1
allele num: 5426
num of homozygotes: 465

Latino
type: Population
allele count: 313
allele frequency: 6.016916570549789e-2
allele num: 5202
num of homozygotes: 26

Other
type: Population
allele count: 67
allele frequency: 1.30859375e-1
allele num: 512
num of homozygotes: 7

European (Non-Finnish)
type: Population
allele count: 3057
allele frequency: 9.680177327422419e-2
allele num: 31580
num of homozygotes: 336

African
type: Population
allele count: 89
allele frequency: 1.784997994384276e-2
allele num: 4986
num of homozygotes: 4

European (Finnish)
type: Population
allele count: 189
allele frequency: 7.440944881889763e-2
allele num: 2540
num of homozygotes: 17

South Asian
type: Population
allele count: 2438
allele frequency: 1.923623165535742e-1
allele num: 12674
num of homozygotes: 321

MQ
type: SiteQuality
SIO_000300: 5.076e1

QD
type: SiteQuality
SIO_000300: 2.583e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

DP
type: SiteQuality
SIO_000300: 7.1207e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.467e0

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.802e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

GenotypeQuality
all individuals: 2751
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1321
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 709
bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 342
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 512
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12674
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5202
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.166561114629513e-5
allele num: 31580
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5426
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4986
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.21e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.802e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 7.1207e5

VQSLOD
type: SiteQuality
SIO_000300: 2.42e0

QD
type: SiteQuality
SIO_000300: 2.583e1

MQRankSum
type: SiteQuality
SIO_000300: 6.8e-2

MQ
type: SiteQuality
SIO_000300: 5.076e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.467e0

GenotypeQuality
all individuals: 2777
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2730
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 473
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variant carriers: 0

GenotypeQuality
all individuals: 443
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variant carriers: 0

GenotypeQuality
all individuals: 12423
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variant carriers: 0

GenotypeQuality
all individuals: 5480
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1058
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variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31656
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2538
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.926782273603083e-4
allele num: 5190
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4992
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.358e1

MQ
type: SiteQuality
SIO_000300: 4.85e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.199e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

DP
type: SiteQuality
SIO_000300: 7.12825e5

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 3956
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2777
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1052
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1490
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variant carriers: 0

GenotypeQuality
all individuals: 263
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variant carriers: 0

GenotypeQuality
all individuals: 473
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variant carriers: 0

GenotypeQuality
all individuals: 2291
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1058
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4992
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.827485380116959e-4
allele num: 5472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12712
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31656
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.85e1

DP
type: SiteQuality
SIO_000300: 7.12825e5

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -6.199e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.358e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.06e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 1.01e-1

GenotypeQuality
all individuals: 2320
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2595
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variant carriers: 0

GenotypeQuality
all individuals: 13145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4148
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 739
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2155
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variant carriers: 1

GenotypeQuality
all individuals: 198
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variant carriers: 0

GenotypeQuality
all individuals: 615
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variant carriers: 0

GenotypeQuality
all individuals: 237
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GenotypeQuality
all individuals: 5552
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1662
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 9.25e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2592
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 6.251953735542357e-5
allele num: 31990
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5042
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12762
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.17067e5

QD
type: SiteQuality
SIO_000300: 3.202e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.035e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.37e-1

FS
type: SiteQuality
SIO_000300: 5.608e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.34e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.51e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.57e-1

MQ
type: SiteQuality
SIO_000300: 4.627e1

GenotypeQuality
all individuals: 4108
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3955
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 488
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variant carriers: 0

GenotypeQuality
all individuals: 888
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GenotypeQuality
all individuals: 1614
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 202
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GenotypeQuality
all individuals: 735
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variant carriers: 1

GenotypeQuality
all individuals: 2064
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2480
bin: 1.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 522
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.114876650884625e-5
allele num: 32104
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5070
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12794
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.514e0

MQRankSum
type: SiteQuality
SIO_000300: 1.11e0

QD
type: SiteQuality
SIO_000300: 7.25e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.67e-2

MQ
type: SiteQuality
SIO_000300: 5.13e1

FS
type: SiteQuality
SIO_000300: 4.715e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.31e-1

DP
type: SiteQuality
SIO_000300: 7.20197e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4058
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 486
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5076
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2590
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12772
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5516
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32110
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

DP
type: SiteQuality
SIO_000300: 7.2264e5

QD
type: SiteQuality
SIO_000300: 3.281e1

MQ
type: SiteQuality
SIO_000300: 4.41e1

MQRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.388e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.61e-2

GenotypeQuality
all individuals: 5418
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8520
bin: 7.5e0
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GenotypeQuality
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bin: 2.25e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 639
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 3935
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1619
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.269035532994924e-3
allele num: 5516
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.899696048632219e-4
allele num: 5264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12776
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32128
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5090
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.908396946564885e-3
allele num: 524
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.15e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.59e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.054e0

MQ
type: SiteQuality
SIO_000300: 4.526e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.96e-1

DP
type: SiteQuality
SIO_000300: 7.25483e5

ClippingRankSum
type: SiteQuality
SIO_000300: -6.28e-1

FS
type: SiteQuality
SIO_000300: 6.2e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.726e0

VQSLOD
type: SiteQuality
SIO_000300: -2.479e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3861
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
all individuals: 491
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 739
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GenotypeQuality
all individuals: 1863
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5498
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12724
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4996
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2566
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5168
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 514
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.976e1

VQSLOD
type: SiteQuality
SIO_000300: -1.413e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.736e0

MQRankSum
type: SiteQuality
SIO_000300: 4.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.18e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.67e-2

DP
type: SiteQuality
SIO_000300: 7.27014e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
all individuals: 2165
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3930
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 728
bin: 2.5e0
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GenotypeQuality
all individuals: 1752
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5381
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2296
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 388
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1484
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 209
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.816163826793809e-5
allele num: 12794
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5254
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5086
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2638
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5532
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32310
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.45e-2

DP
type: SiteQuality
SIO_000300: 7.31901e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQRankSum
type: SiteQuality
SIO_000300: -7.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.864e1

QD
type: SiteQuality
SIO_000300: 3.297e1

VQSLOD
type: SiteQuality
SIO_000300: -4.732e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.58e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
all individuals: 322
bin: 8.75e1
variant carriers: 127

GenotypeQuality
all individuals: 6347
bin: 6.25e1
variant carriers: 295

GenotypeQuality
all individuals: 4459
bin: 7.5e0
variant carriers: 631

GenotypeQuality
all individuals: 428
bin: 5.75e1
variant carriers: 264

GenotypeQuality
all individuals: 9268
bin: 2.25e1
variant carriers: 714

GenotypeQuality
all individuals: 3812
bin: 3.25e1
variant carriers: 574

GenotypeQuality
all individuals: 414
bin: 9.25e1
variant carriers: 152

GenotypeQuality
all individuals: 5410
bin: 2.5e0
variant carriers: 157

GenotypeQuality
all individuals: 650
bin: 8.25e1
variant carriers: 192

GenotypeQuality
all individuals: 786
bin: 7.25e1
variant carriers: 190

GenotypeQuality
all individuals: 2974
bin: 3.75e1
variant carriers: 511

GenotypeQuality
all individuals: 2897
bin: 2.75e1
variant carriers: 410

Latino
type: Population
allele count: 909
allele frequency: 1.737385321100917e-1
allele num: 5232
num of homozygotes: 82

East Asian
type: Population
allele count: 329
allele frequency: 6.383391540551028e-2
allele num: 5154
num of homozygotes: 15

African
type: Population
allele count: 704
allele frequency: 1.40462889066241e-1
allele num: 5012
num of homozygotes: 61

European (Non-Finnish)
type: Population
allele count: 4708
allele frequency: 1.502425325504212e-1
allele num: 31336
num of homozygotes: 470

South Asian
type: Population
allele count: 2173
allele frequency: 1.714263174502998e-1
allele num: 12676
num of homozygotes: 238

European (Finnish)
type: Population
allele count: 341
allele frequency: 1.33203125e-1
allele num: 2560
num of homozygotes: 26

Other
type: Population
allele count: 79
allele frequency: 1.573705179282869e-1
allele num: 502
num of homozygotes: 8

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

FS
type: SiteQuality
SIO_000300: 2.769e0

MQRankSum
type: SiteQuality
SIO_000300: -1.294e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

DP
type: SiteQuality
SIO_000300: 7.7438e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.173e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.51e1

QD
type: SiteQuality
SIO_000300: 2.631e1

MQ
type: SiteQuality
SIO_000300: 4.777e1

GenotypeQuality
all individuals: 3812
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8253
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 893
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1637
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6347
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1533
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9268
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 322
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 786
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 3
allele frequency: 5.820721769499418e-4
allele num: 5154
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 31336
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5012
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2560
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5232
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12676
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.631e1

DP
type: SiteQuality
SIO_000300: 7.7438e5

MQRankSum
type: SiteQuality
SIO_000300: -1.294e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.17e-1

FS
type: SiteQuality
SIO_000300: 2.769e0

VQSLOD
type: SiteQuality
SIO_000300: 3.51e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.24e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.6e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.173e-1

MQ
type: SiteQuality
SIO_000300: 4.777e1

GenotypeQuality
all individuals: 514
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 921
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2687
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1960
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13178
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2882
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34624
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

MQ
type: SiteQuality
SIO_000300: 4.265e1

DP
type: SiteQuality
SIO_000300: 7.65826e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

QD
type: SiteQuality
SIO_000300: 1.734e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

MQRankSum
type: SiteQuality
SIO_000300: -1.377e0

VQSLOD
type: SiteQuality
SIO_000300: -1.938e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 921
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2014
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 439
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4217
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3956
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12392
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1624
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2098
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 244
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5622
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13178
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.888170055452865e-5
allele num: 34624
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2882
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 7.65826e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.265e1

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.938e0

MQRankSum
type: SiteQuality
SIO_000300: -1.377e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.054e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-2

QD
type: SiteQuality
SIO_000300: 1.734e1

GenotypeQuality
all individuals: 792
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 614
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1087
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2331
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1965
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2023
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5247
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34760
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5426
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 3.445899379738112e-4
allele num: 2902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13170
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.035e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.31e-2

DP
type: SiteQuality
SIO_000300: 7.7414e5

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.271e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.8e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -6.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.01e-1

MQ
type: SiteQuality
SIO_000300: 5.444e1

VQSLOD
type: SiteQuality
SIO_000300: -1.218e0

GenotypeQuality
all individuals: 3916
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 525
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2359
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 844
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 12993
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 633
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8354
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 258
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5137
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5650
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2902
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13186
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.25e-2

QD
type: SiteQuality
SIO_000300: 2.856e1

MQRankSum
type: SiteQuality
SIO_000300: -1.067e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.166e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.067e0

MQ
type: SiteQuality
SIO_000300: 3.444e1

DP
type: SiteQuality
SIO_000300: 7.8205e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.72e-1

GenotypeQuality
all individuals: 2232
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6570
bin: 7.5e0
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GenotypeQuality
all individuals: 8814
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5083
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1025
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 816
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 259
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13157
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3877
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.856000456960073e-5
allele num: 35014
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13190
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.85821e5

MQ
type: SiteQuality
SIO_000300: 5.265e1

QD
type: SiteQuality
SIO_000300: 4.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.741e0

MQRankSum
type: SiteQuality
SIO_000300: -3.48e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.542e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

GenotypeQuality
all individuals: 260
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 846
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1762
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 646
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3762
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1704
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 325
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 414
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1405
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 540
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13192
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5666
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5694
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5472
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 35082
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2922
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.98e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 7.8999e5

QD
type: SiteQuality
SIO_000300: 7.13e0

VQSLOD
type: SiteQuality
SIO_000300: -1.636e0

FS
type: SiteQuality
SIO_000300: 5.1e0

BaseQRankSum
type: SiteQuality
SIO_000300: -9.22e-1

MQ
type: SiteQuality
SIO_000300: 4.922e1

GenotypeQuality
all individuals: 1064
bin: 2.5e0
variant carriers: 71

GenotypeQuality
all individuals: 997
bin: 7.75e1
variant carriers: 134

GenotypeQuality
all individuals: 1136
bin: 4.25e1
variant carriers: 191

GenotypeQuality
all individuals: 2062
bin: 6.75e1
variant carriers: 137

GenotypeQuality
all individuals: 3137
bin: 3.75e1
variant carriers: 317

GenotypeQuality
all individuals: 662
bin: 8.25e1
variant carriers: 100

GenotypeQuality
all individuals: 12066
bin: 2.25e1
variant carriers: 315

GenotypeQuality
all individuals: 6327
bin: 9.75e1
variant carriers: 5579

GenotypeQuality
all individuals: 468
bin: 5.75e1
variant carriers: 104

GenotypeQuality
all individuals: 817
bin: 7.25e1
variant carriers: 92

GenotypeQuality
all individuals: 357
bin: 9.25e1
variant carriers: 73

GenotypeQuality
all individuals: 1271
bin: 4.75e1
variant carriers: 271

Latino
type: Population
allele count: 771
allele frequency: 1.317948717948718e-1
allele num: 5850
num of homozygotes: 82

European (Finnish)
type: Population
allele count: 241
allele frequency: 8.006644518272425e-2
allele num: 3010
num of homozygotes: 22

African
type: Population
allele count: 537
allele frequency: 9.760087241003272e-2
allele num: 5502
num of homozygotes: 47

South Asian
type: Population
allele count: 1742
allele frequency: 1.299612056102656e-1
allele num: 13404
num of homozygotes: 218

East Asian
type: Population
allele count: 152
allele frequency: 2.668539325842697e-2
allele num: 5696
num of homozygotes: 10

European (Non-Finnish)
type: Population
allele count: 3322
allele frequency: 9.273630729719166e-2
allele num: 35822
num of homozygotes: 393

Other
type: Population
allele count: 63
allele frequency: 1.137184115523466e-1
allele num: 554
num of homozygotes: 9

QD
type: SiteQuality
SIO_000300: 2.54e1

MQ
type: SiteQuality
SIO_000300: 4.731e1

VQSLOD
type: SiteQuality
SIO_000300: 2.827e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

FS
type: SiteQuality
SIO_000300: 2.831e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.841e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

MQRankSum
type: SiteQuality
SIO_000300: -1.444e0

DP
type: SiteQuality
SIO_000300: 8.19575e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1636
bin: 4.75e1
variant carriers: 433

GenotypeQuality
all individuals: 670
bin: 8.25e1
variant carriers: 187

GenotypeQuality
all individuals: 629
bin: 5.75e1
variant carriers: 205

GenotypeQuality
all individuals: 2284
bin: 1.75e1
variant carriers: 384

GenotypeQuality
all individuals: 3119
bin: 3.75e1
variant carriers: 546

GenotypeQuality
all individuals: 326
bin: 8.75e1
variant carriers: 135

GenotypeQuality
all individuals: 372
bin: 9.25e1
variant carriers: 138

GenotypeQuality
all individuals: 1423
bin: 2.5e0
variant carriers: 154

GenotypeQuality
all individuals: 3076
bin: 2.75e1
variant carriers: 349

GenotypeQuality
all individuals: 10281
bin: 2.25e1
variant carriers: 479

GenotypeQuality
all individuals: 766
bin: 7.25e1
variant carriers: 188

GenotypeQuality
all individuals: 950
bin: 7.75e1
variant carriers: 223

South Asian
type: Population
allele count: 2824
allele frequency: 2.081061164333088e-1
allele num: 13570
num of homozygotes: 532

East Asian
type: Population
allele count: 1513
allele frequency: 2.595197255574614e-1
allele num: 5830
num of homozygotes: 378

Latino
type: Population
allele count: 1643
allele frequency: 2.662884927066451e-1
allele num: 6170
num of homozygotes: 450

European (Non-Finnish)
type: Population
allele count: 6996
allele frequency: 1.88642614463679e-1
allele num: 37086
num of homozygotes: 1685

African
type: Population
allele count: 2060
allele frequency: 3.486797562626947e-1
allele num: 5908
num of homozygotes: 504

European (Finnish)
type: Population
allele count: 526
allele frequency: 1.679438058748404e-1
allele num: 3132
num of homozygotes: 116

Other
type: Population
allele count: 116
allele frequency: 2.020905923344948e-1
allele num: 574
num of homozygotes: 24

VQSLOD
type: SiteQuality
SIO_000300: 1.454e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.756e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.734e0

QD
type: SiteQuality
SIO_000300: 2.069e1

MQRankSum
type: SiteQuality
SIO_000300: 8.88e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 8.7943e5

MQ
type: SiteQuality
SIO_000300: 5.524e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.98e-1

GenotypeQuality
all individuals: 1513
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11517
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1479
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2703
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 564
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 480
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2159
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 491
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1071
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1966
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1542
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6428
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5984
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 5.243288590604027e-5
allele num: 38144
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.2e-3

MQ
type: SiteQuality
SIO_000300: 4.835e1

QD
type: SiteQuality
SIO_000300: 8.880000000000001e0

DP
type: SiteQuality
SIO_000300: 8.84076e5

FS
type: SiteQuality
SIO_000300: 8.435e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.7e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.76e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.211e0

GenotypeQuality
all individuals: 354
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2040
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4570
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2794
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1411
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9835
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variant carriers: 0

GenotypeQuality
all individuals: 11868
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1528
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38488
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13766
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.659475605708596e-4
allele num: 6026
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3254
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6258
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 590
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.37e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.04e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.177e1

MQRankSum
type: SiteQuality
SIO_000300: 8.04e-1

QD
type: SiteQuality
SIO_000300: 2.158e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.399999999999999e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.169e0

DP
type: SiteQuality
SIO_000300: 8.91799e5

GenotypeQuality
all individuals: 10072
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3340
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2828
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2058
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1386
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.1767522855899e-4
allele num: 13782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3256
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

DP
type: SiteQuality
SIO_000300: 8.95058e5

QD
type: SiteQuality
SIO_000300: 1.317e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.51e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

MQ
type: SiteQuality
SIO_000300: 5.872e1

FS
type: SiteQuality
SIO_000300: 4.634e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.092e0

GenotypeQuality
all individuals: 380
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4538
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1249
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3454
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11891
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1101
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10072
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1545
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1201
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13782
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.659475605708596e-4
allele num: 6026
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6272
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3256
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 38642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6496
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.85e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.16e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.45e-2

FS
type: SiteQuality
SIO_000300: 4.634e0

MQRankSum
type: SiteQuality
SIO_000300: 2.51e0

DP
type: SiteQuality
SIO_000300: 8.95058e5

VQSLOD
type: SiteQuality
SIO_000300: -2.092e0

QD
type: SiteQuality
SIO_000300: 1.317e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.78e-1

MQ
type: SiteQuality
SIO_000300: 5.872e1

GenotypeQuality
all individuals: 4431
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3450
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1826
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1442
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 592
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 698
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3249
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 499
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1092
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1175
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2718
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2062
bin: 9.75e1
variant carriers: 9

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.597267674406524e-5
allele num: 38502
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6248
num of homozygotes: 0

East Asian
type: Population
allele count: 8
allele frequency: 1.335559265442404e-3
allele num: 5990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3188
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13734
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.718213058419244e-3
allele num: 582
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.546551190844417e-4
allele num: 6466
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.87e-1

FS
type: SiteQuality
SIO_000300: 6.744e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.95e0

MQRankSum
type: SiteQuality
SIO_000300: -1.638e0

DP
type: SiteQuality
SIO_000300: 8.97919e5

ClippingRankSum
type: SiteQuality
SIO_000300: -5.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.1e-3

MQ
type: SiteQuality
SIO_000300: 4.563e1

VQSLOD
type: SiteQuality
SIO_000300: -2.411e0

QD
type: SiteQuality
SIO_000300: 7.02e0

GenotypeQuality
all individuals: 1602
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1314
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1132
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 348
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 516
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6010
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13768
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39002
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6570
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3322
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 3.174603174603175e-4
allele num: 6300
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.705e1

MQRankSum
type: SiteQuality
SIO_000300: -1.369e0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

FS
type: SiteQuality
SIO_000300: 5.12e0

DP
type: SiteQuality
SIO_000300: 9.08319e5

QD
type: SiteQuality
SIO_000300: 3.04e0

GenotypeQuality
all individuals: 2066
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 516
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 445
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3389
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10598
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1602
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3307
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1132
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 605
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6300
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 39002
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13768
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.5220700152207e-4
allele num: 6570
num of homozygotes: 0

East Asian
type: Population
allele count: 9
allele frequency: 1.497504159733777e-3
allele num: 6010
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.683501683501683e-3
allele num: 594
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 1.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

FS
type: SiteQuality
SIO_000300: 5.12e0

MQRankSum
type: SiteQuality
SIO_000300: -1.369e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

QD
type: SiteQuality
SIO_000300: 3.04e0

DP
type: SiteQuality
SIO_000300: 9.08319e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.705e1

GenotypeQuality
all individuals: 984
bin: 5.25e1
variant carriers: 396

GenotypeQuality
all individuals: 7884
bin: 2.25e1
variant carriers: 621

GenotypeQuality
all individuals: 3144
bin: 7.5e0
variant carriers: 610

GenotypeQuality
all individuals: 1155
bin: 7.25e1
variant carriers: 135

GenotypeQuality
all individuals: 1428
bin: 4.75e1
variant carriers: 429

GenotypeQuality
all individuals: 2524
bin: 6.75e1
variant carriers: 221

GenotypeQuality
all individuals: 453
bin: 5.75e1
variant carriers: 209

GenotypeQuality
all individuals: 5598
bin: 2.5e0
variant carriers: 159

GenotypeQuality
all individuals: 630
bin: 9.25e1
variant carriers: 119

GenotypeQuality
all individuals: 2886
bin: 3.25e1
variant carriers: 543

GenotypeQuality
all individuals: 2304
bin: 2.75e1
variant carriers: 341

GenotypeQuality
all individuals: 8742
bin: 9.75e1
variant carriers: 6992

GenotypeQuality
all individuals: 1472
bin: 7.75e1
variant carriers: 197

Latino
type: Population
allele count: 1118
allele frequency: 1.799742433998712e-1
allele num: 6212
num of homozygotes: 166

African
type: Population
allele count: 743
allele frequency: 1.270519835841313e-1
allele num: 5848
num of homozygotes: 77

European (Finnish)
type: Population
allele count: 394
allele frequency: 1.295200525969757e-1
allele num: 3042
num of homozygotes: 48

East Asian
type: Population
allele count: 313
allele frequency: 5.605300859598854e-2
allele num: 5584
num of homozygotes: 21

South Asian
type: Population
allele count: 2210
allele frequency: 1.672975018925057e-1
allele num: 13210
num of homozygotes: 311

Other
type: Population
allele count: 80
allele frequency: 1.438848920863309e-1
allele num: 556
num of homozygotes: 10

European (Non-Finnish)
type: Population
allele count: 5337
allele frequency: 1.4735766745817e-1
allele num: 36218
num of homozygotes: 747

ClippingRankSum
type: SiteQuality
SIO_000300: -3.06e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.776e1

QD
type: SiteQuality
SIO_000300: 2.146e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.307e-1

MQ
type: SiteQuality
SIO_000300: 4.775e1

DP
type: SiteQuality
SIO_000300: 9.69791e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.47e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.099999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.704e0

GenotypeQuality
all individuals: 2981
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1565
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 2.5e0
variant carriers: 2

GenotypeQuality
all individuals: 4399
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 9552
bin: 2.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1670
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1912
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3433
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1800
bin: 1.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 2.788622420524261e-4
allele num: 7172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 15
allele frequency: 3.506311360448808e-4
allele num: 42780
num of homozygotes: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

South Asian
type: Population
allele count: 67
allele frequency: 4.699775533108867e-3
allele num: 14256
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 1
allele frequency: 2.707092582566324e-4
allele num: 3694
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.75e-1

QD
type: SiteQuality
SIO_000300: 2.441e1

DP
type: SiteQuality
SIO_000300: 9.75014e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.18e-1

FS
type: SiteQuality
SIO_000300: 6.81e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

MQ
type: SiteQuality
SIO_000300: 5.158e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

GenotypeQuality
all individuals: 4399
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 771
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1912
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1670
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9552
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1320
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1454
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1235
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4183
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2595
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3399
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3694
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14256
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6690
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6308
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7172
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42780
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.75014e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.18e-2

VQSLOD
type: SiteQuality
SIO_000300: 5.18e-1

QD
type: SiteQuality
SIO_000300: 2.441e1

FS
type: SiteQuality
SIO_000300: 6.81e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -8.75e-1

MQ
type: SiteQuality
SIO_000300: 5.158e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.18e-1

GenotypeQuality
all individuals: 14881
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9976
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3764
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 668
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variant carriers: 0

GenotypeQuality
all individuals: 4324
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 1.357588922074396e-4
allele num: 7366
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6938
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

DP
type: SiteQuality
SIO_000300: 1.023974e6

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.734e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

FS
type: SiteQuality
SIO_000300: 5.784e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

QD
type: SiteQuality
SIO_000300: 3.058e1

MQ
type: SiteQuality
SIO_000300: 5.088e1

GenotypeQuality
all individuals: 668
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4324
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2561
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 2892
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3764
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14881
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 811
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1426
bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.080155318263764e-4
allele num: 14422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44338
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6938
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.552795031055901e-3
allele num: 644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3876
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.023974e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

MQ
type: SiteQuality
SIO_000300: 5.088e1

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

FS
type: SiteQuality
SIO_000300: 5.784e0

QD
type: SiteQuality
SIO_000300: 3.058e1

MQRankSum
type: SiteQuality
SIO_000300: -1.734e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

GenotypeQuality
all individuals: 1426
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 923
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14881
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2662
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1493
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3875
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3764
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2561
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2892
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1603
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2106
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14422
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6458
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 6.766205061121386e-5
allele num: 44338
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3876
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7366
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6938
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.89e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.59e-2

QD
type: SiteQuality
SIO_000300: 3.058e1

MQRankSum
type: SiteQuality
SIO_000300: -1.734e0

FS
type: SiteQuality
SIO_000300: 5.784e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.54e-1

DP
type: SiteQuality
SIO_000300: 1.023974e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.72e-1

MQ
type: SiteQuality
SIO_000300: 5.088e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.54e-1

GenotypeQuality
all individuals: 2841
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3861
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4340
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 666
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1421
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1607
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2108
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2555
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 375
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1406
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 646
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44344
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14410
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3876
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6450
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

QD
type: SiteQuality
SIO_000300: 1.07e1

VQSLOD
type: SiteQuality
SIO_000300: -1.439e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.694e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.169999999999999e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.6e-3

DP
type: SiteQuality
SIO_000300: 1.028305e6

MQ
type: SiteQuality
SIO_000300: 4.873e1

GenotypeQuality
all individuals: 333
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2570
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4217
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9918
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 733
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3471
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2204
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2497
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16712
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7396
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3934
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44936
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6962
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14476
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.894e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

MQ
type: SiteQuality
SIO_000300: 5.145e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

QD
type: SiteQuality
SIO_000300: 4.56e0

DP
type: SiteQuality
SIO_000300: 1.049205e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

GenotypeQuality
all individuals: 3471
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 836
bin: 9.25e1
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GenotypeQuality
all individuals: 828
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2516
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9918
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
all individuals: 2570
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 733
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 357
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 941
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 682
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3934
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.907985631389887e-5
allele num: 14476
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6962
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 648
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.93e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.25e-2

MQ
type: SiteQuality
SIO_000300: 5.145e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.82e-1

DP
type: SiteQuality
SIO_000300: 1.049205e6

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.01e0

MQRankSum
type: SiteQuality
SIO_000300: 4.33e-1

QD
type: SiteQuality
SIO_000300: 4.56e0

VQSLOD
type: SiteQuality
SIO_000300: -4.894e-1

GenotypeQuality
all individuals: 323
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4104
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 683
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 715
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3352
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2442
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2392
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 843
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2271
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 422
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2577
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45274
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.426940639269406e-4
allele num: 7008
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14502
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3964
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6516
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.058912e6

QD
type: SiteQuality
SIO_000300: 2.76e1

MQ
type: SiteQuality
SIO_000300: 5.739e1

FS
type: SiteQuality
SIO_000300: 3.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.14e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.054e0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.17e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.32e-1

GenotypeQuality
all individuals: 766
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3278
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 808
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2393
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2582
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4158
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2293
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4163
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 955
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 399
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 711
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7464
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4004
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14520
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 654
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 45452
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.065641e6

MQ
type: SiteQuality
SIO_000300: 3.734e1

QD
type: SiteQuality
SIO_000300: 3.104e1

MQRankSum
type: SiteQuality
SIO_000300: 1.53e0

VQSLOD
type: SiteQuality
SIO_000300: -2.691e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.32e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.36e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1557
bin: 1.75e1
variant carriers: 211

GenotypeQuality
all individuals: 1804
bin: 2.75e1
variant carriers: 181

GenotypeQuality
all individuals: 2766
bin: 6.75e1
variant carriers: 201

GenotypeQuality
all individuals: 734
bin: 5.25e1
variant carriers: 239

GenotypeQuality
all individuals: 975
bin: 4.75e1
variant carriers: 275

GenotypeQuality
all individuals: 821
bin: 4.25e1
variant carriers: 167

GenotypeQuality
all individuals: 2678
bin: 7.5e0
variant carriers: 206

GenotypeQuality
all individuals: 861
bin: 9.25e1
variant carriers: 209

GenotypeQuality
all individuals: 587
bin: 5.75e1
variant carriers: 175

GenotypeQuality
all individuals: 1654
bin: 3.75e1
variant carriers: 232

GenotypeQuality
all individuals: 1208
bin: 8.25e1
variant carriers: 167

GenotypeQuality
all individuals: 1314
bin: 7.25e1
variant carriers: 148

GenotypeQuality
all individuals: 1723
bin: 7.75e1
variant carriers: 208

African
type: Population
allele count: 1342
allele frequency: 1.925394548063128e-1
allele num: 6970
num of homozygotes: 211

Latino
type: Population
allele count: 2217
allele frequency: 2.974242017708613e-1
allele num: 7454
num of homozygotes: 541

European (Finnish)
type: Population
allele count: 636
allele frequency: 1.679873217115689e-1
allele num: 3786
num of homozygotes: 111

Other
type: Population
allele count: 118
allele frequency: 1.861198738170347e-1
allele num: 634
num of homozygotes: 20

South Asian
type: Population
allele count: 2612
allele frequency: 1.83041345480028e-1
allele num: 14270
num of homozygotes: 406

East Asian
type: Population
allele count: 1724
allele frequency: 2.735639479530308e-1
allele num: 6302
num of homozygotes: 382

European (Non-Finnish)
type: Population
allele count: 7348
allele frequency: 1.70061099796334e-1
allele num: 43208
num of homozygotes: 1286

MQRankSum
type: SiteQuality
SIO_000300: -1.252e0

MQ
type: SiteQuality
SIO_000300: 4.914e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.508e1

FS
type: SiteQuality
SIO_000300: 3.919e0

DP
type: SiteQuality
SIO_000300: 1.229982e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.578e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

QD
type: SiteQuality
SIO_000300: 2.713e1

GenotypeQuality
all individuals: 3699
bin: 2.5e0
variant carriers: 78

GenotypeQuality
all individuals: 1315
bin: 1.25e1
variant carriers: 412

GenotypeQuality
all individuals: 13929
bin: 9.75e1
variant carriers: 2473

GenotypeQuality
all individuals: 975
bin: 4.75e1
variant carriers: 164

GenotypeQuality
all individuals: 2290
bin: 3.25e1
variant carriers: 186

GenotypeQuality
all individuals: 640
bin: 8.75e1
variant carriers: 87

GenotypeQuality
all individuals: 2766
bin: 6.75e1
variant carriers: 109

GenotypeQuality
all individuals: 587
bin: 5.75e1
variant carriers: 96

GenotypeQuality
all individuals: 1557
bin: 1.75e1
variant carriers: 628

GenotypeQuality
all individuals: 1723
bin: 7.75e1
variant carriers: 133

GenotypeQuality
all individuals: 734
bin: 5.25e1
variant carriers: 116

GenotypeQuality
all individuals: 10629
bin: 6.25e1
variant carriers: 119

GenotypeQuality
all individuals: 1208
bin: 8.25e1
variant carriers: 125

South Asian
type: Population
allele count: 407
allele frequency: 2.852137351086195e-2
allele num: 14270
num of homozygotes: 3

Latino
type: Population
allele count: 325
allele frequency: 4.36007512744835e-2
allele num: 7454
num of homozygotes: 5

East Asian
type: Population
allele count: 238
allele frequency: 3.776578863852745e-2
allele num: 6302
num of homozygotes: 9

European (Finnish)
type: Population
allele count: 184
allele frequency: 4.860010565240359e-2
allele num: 3786
num of homozygotes: 2

Other
type: Population
allele count: 25
allele frequency: 3.943217665615142e-2
allele num: 634
num of homozygotes: 0

African
type: Population
allele count: 151
allele frequency: 2.166427546628407e-2
allele num: 6970
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 2040
allele frequency: 4.721347898537308e-2
allele num: 43208
num of homozygotes: 61

MQRankSum
type: SiteQuality
SIO_000300: -1.252e0

MQ
type: SiteQuality
SIO_000300: 4.914e1

VQSLOD
type: SiteQuality
SIO_000300: 3.508e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.578e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.33e0

FS
type: SiteQuality
SIO_000300: 3.919e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.79e-1

QD
type: SiteQuality
SIO_000300: 2.713e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.04e-1

DP
type: SiteQuality
SIO_000300: 1.229982e6

GenotypeQuality
all individuals: 14190
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1950
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2859
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1127
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2747
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2448
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4224
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1384
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1015
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2156
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4628
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.636580833554553e-5
allele num: 15068
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7526
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49486
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7038
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 710
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

DP
type: SiteQuality
SIO_000300: 1.240334e6

MQ
type: SiteQuality
SIO_000300: 5.177e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.733e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.89e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.0e-1

FS
type: SiteQuality
SIO_000300: 5.035e0

QD
type: SiteQuality
SIO_000300: 2.855e1

GenotypeQuality
all individuals: 1494
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 868
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2078
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3198
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5145
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1742
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2282
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1350
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 887
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10837
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1370
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1510
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7768
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 4.123711340206186e-4
allele num: 14550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44970
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3956
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.403705783267827e-4
allele num: 7124
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.439e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

MQ
type: SiteQuality
SIO_000300: 4.54e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

VQSLOD
type: SiteQuality
SIO_000300: 2.821e1

QD
type: SiteQuality
SIO_000300: 1.827e1

DP
type: SiteQuality
SIO_000300: 1.302575e6

MQRankSum
type: SiteQuality
SIO_000300: -2.013e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.886e-1

GenotypeQuality
all individuals: 1350
bin: 9.25e1
variant carriers: 206

GenotypeQuality
all individuals: 3198
bin: 6.75e1
variant carriers: 246

GenotypeQuality
all individuals: 1742
bin: 3.75e1
variant carriers: 344

GenotypeQuality
all individuals: 1777
bin: 8.25e1
variant carriers: 232

GenotypeQuality
all individuals: 2078
bin: 3.25e1
variant carriers: 362

GenotypeQuality
all individuals: 3836
bin: 2.5e0
variant carriers: 142

GenotypeQuality
all individuals: 1229
bin: 1.25e1
variant carriers: 538

GenotypeQuality
all individuals: 568
bin: 5.75e1
variant carriers: 164

GenotypeQuality
all individuals: 1510
bin: 7.25e1
variant carriers: 147

GenotypeQuality
all individuals: 868
bin: 4.25e1
variant carriers: 213

GenotypeQuality
all individuals: 12306
bin: 9.75e1
variant carriers: 6946

GenotypeQuality
all individuals: 1370
bin: 4.75e1
variant carriers: 351

GenotypeQuality
all individuals: 5145
bin: 2.25e1
variant carriers: 588

Other
type: Population
allele count: 84
allele frequency: 1.280487804878049e-1
allele num: 656
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 359
allele frequency: 9.074823053589484e-2
allele num: 3956
num of homozygotes: 34

European (Non-Finnish)
type: Population
allele count: 6054
allele frequency: 1.346230820547031e-1
allele num: 44970
num of homozygotes: 699

African
type: Population
allele count: 882
allele frequency: 1.238068500842223e-1
allele num: 7124
num of homozygotes: 69

South Asian
type: Population
allele count: 1622
allele frequency: 1.114776632302406e-1
allele num: 14550
num of homozygotes: 183

Latino
type: Population
allele count: 729
allele frequency: 9.384654994850669e-2
allele num: 7768
num of homozygotes: 64

East Asian
type: Population
allele count: 539
allele frequency: 8.289756997846816e-2
allele num: 6502
num of homozygotes: 62

ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

MQ
type: SiteQuality
SIO_000300: 4.54e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 2.821e1

DP
type: SiteQuality
SIO_000300: 1.302575e6

MQRankSum
type: SiteQuality
SIO_000300: -2.013e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.45e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.886e-1

FS
type: SiteQuality
SIO_000300: 4.439e0

QD
type: SiteQuality
SIO_000300: 1.827e1

GenotypeQuality
all individuals: 6138
bin: 6.25e1
variant carriers: 1019

GenotypeQuality
all individuals: 1167
bin: 2.75e1
variant carriers: 615

GenotypeQuality
all individuals: 1210
bin: 5.25e1
variant carriers: 998

GenotypeQuality
all individuals: 2045
bin: 7.5e0
variant carriers: 950

GenotypeQuality
all individuals: 1947
bin: 6.75e1
variant carriers: 935

GenotypeQuality
all individuals: 1448
bin: 3.25e1
variant carriers: 914

GenotypeQuality
all individuals: 3370
bin: 2.25e1
variant carriers: 1026

GenotypeQuality
all individuals: 581
bin: 8.75e1
variant carriers: 461

GenotypeQuality
all individuals: 908
bin: 7.25e1
variant carriers: 497

GenotypeQuality
all individuals: 840
bin: 4.25e1
variant carriers: 596

GenotypeQuality
all individuals: 24060
bin: 9.75e1
variant carriers: 23684

GenotypeQuality
all individuals: 1402
bin: 7.75e1
variant carriers: 931

GenotypeQuality
all individuals: 1137
bin: 8.25e1
variant carriers: 846

African
type: Population
allele count: 4540
allele frequency: 6.037234042553191e-1
allele num: 7520
num of homozygotes: 1446

European (Finnish)
type: Population
allele count: 1940
allele frequency: 4.690522243713733e-1
allele num: 4136
num of homozygotes: 542

South Asian
type: Population
allele count: 8324
allele frequency: 5.609920474457474e-1
allele num: 14838
num of homozygotes: 2594

European (Non-Finnish)
type: Population
allele count: 23429
allele frequency: 5.084639090238292e-1
allele num: 46078
num of homozygotes: 6985

Latino
type: Population
allele count: 6202
allele frequency: 7.479498311625663e-1
allele num: 8292
num of homozygotes: 2488

East Asian
type: Population
allele count: 4012
allele frequency: 6.093560145808019e-1
allele num: 6584
num of homozygotes: 1445

Other
type: Population
allele count: 387
allele frequency: 5.625e-1
allele num: 688
num of homozygotes: 119

MQ
type: SiteQuality
SIO_000300: 5.063e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.496e-1

FS
type: SiteQuality
SIO_000300: 2.93e0

MQRankSum
type: SiteQuality
SIO_000300: -8.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.55e0

VQSLOD
type: SiteQuality
SIO_000300: 2.234e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

DP
type: SiteQuality
SIO_000300: 1.452663e6

QD
type: SiteQuality
SIO_000300: 2.93e1

GenotypeQuality
all individuals: 1960
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3216
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2520
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2060
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1354
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1109
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1444
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 989
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2945
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2582
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10169
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2482
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3955
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15514
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7354
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8056
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52662
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 4.364906154517678e-4
allele num: 9164
num of homozygotes: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.458191e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.29e-1

MQ
type: SiteQuality
SIO_000300: 4.606e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.528999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

FS
type: SiteQuality
SIO_000300: 1.343e0

QD
type: SiteQuality
SIO_000300: 1.95e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.02e0

MQRankSum
type: SiteQuality
SIO_000300: -1.175e0

GenotypeQuality
all individuals: 554
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1394
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3332
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2104
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1178
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1064
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2057
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1587
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 883
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 1
allele frequency: 1.298701298701299e-3
allele num: 770
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.116569897275569e-4
allele num: 8956
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8056
num of homozygotes: 0

East Asian
type: Population
allele count: 14
allele frequency: 1.978518937252685e-3
allele num: 7076
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15442
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4964
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52242
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.482971e6

ClippingRankSum
type: SiteQuality
SIO_000300: -7.04e-1

QD
type: SiteQuality
SIO_000300: 2.574e1

MQ
type: SiteQuality
SIO_000300: 4.857e1

FS
type: SiteQuality
SIO_000300: 3.627e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.879e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.897e1

GenotypeQuality
all individuals: 1178
bin: 4.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1587
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2243
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1276
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2104
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1031
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 16853
bin: 9.75e1
variant carriers: 57

GenotypeQuality
all individuals: 883
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9594
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1726
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 2147
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3285
bin: 6.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1064
bin: 1.75e1
variant carriers: 5

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8056
num of homozygotes: 0

East Asian
type: Population
allele count: 64
allele frequency: 9.044657998869417e-3
allele num: 7076
num of homozygotes: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8956
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.298701298701299e-3
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.914168676543777e-5
allele num: 52242
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4964
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.879e-1

DP
type: SiteQuality
SIO_000300: 1.482971e6

QD
type: SiteQuality
SIO_000300: 2.574e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.897e1

FS
type: SiteQuality
SIO_000300: 3.627e0

MQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

MQ
type: SiteQuality
SIO_000300: 4.857e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

GenotypeQuality
all individuals: 3332
bin: 7.5e0
variant carriers: 176

GenotypeQuality
all individuals: 883
bin: 8.75e1
variant carriers: 87

GenotypeQuality
all individuals: 1031
bin: 1.25e1
variant carriers: 168

GenotypeQuality
all individuals: 2057
bin: 4.75e1
variant carriers: 240

GenotypeQuality
all individuals: 1178
bin: 4.25e1
variant carriers: 150

GenotypeQuality
all individuals: 4518
bin: 2.25e1
variant carriers: 192

GenotypeQuality
all individuals: 9594
bin: 6.25e1
variant carriers: 236

GenotypeQuality
all individuals: 3285
bin: 6.75e1
variant carriers: 176

GenotypeQuality
all individuals: 2147
bin: 3.25e1
variant carriers: 217

GenotypeQuality
all individuals: 2104
bin: 3.75e1
variant carriers: 213

GenotypeQuality
all individuals: 1064
bin: 1.75e1
variant carriers: 170

GenotypeQuality
all individuals: 470
bin: 5.75e1
variant carriers: 157

GenotypeQuality
all individuals: 16853
bin: 9.75e1
variant carriers: 10704

African
type: Population
allele count: 1286
allele frequency: 1.596325719960278e-1
allele num: 8056
num of homozygotes: 188

European (Finnish)
type: Population
allele count: 646
allele frequency: 1.301369863013699e-1
allele num: 4964
num of homozygotes: 112

Latino
type: Population
allele count: 2208
allele frequency: 2.465386333184457e-1
allele num: 8956
num of homozygotes: 532

East Asian
type: Population
allele count: 1749
allele frequency: 2.471735443753533e-1
allele num: 7076
num of homozygotes: 389

European (Non-Finnish)
type: Population
allele count: 7357
allele frequency: 1.408253895333257e-1
allele num: 52242
num of homozygotes: 1275

Other
type: Population
allele count: 123
allele frequency: 1.597402597402597e-1
allele num: 770
num of homozygotes: 21

South Asian
type: Population
allele count: 2582
allele frequency: 1.672063204248155e-1
allele num: 15442
num of homozygotes: 392

MQRankSum
type: SiteQuality
SIO_000300: -8.06e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

DP
type: SiteQuality
SIO_000300: 1.482971e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.879e-1

MQ
type: SiteQuality
SIO_000300: 4.857e1

VQSLOD
type: SiteQuality
SIO_000300: 2.897e1

QD
type: SiteQuality
SIO_000300: 2.574e1

FS
type: SiteQuality
SIO_000300: 3.627e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.04e-1

GenotypeQuality
all individuals: 11705
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4223
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5129
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2361
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3620
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1473
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1373
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3026
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1255
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2087
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2228
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1812
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 435
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.350621285791464e-4
allele num: 7404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9212
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8086
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52824
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5092
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.012e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.48183e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.953e0

MQ
type: SiteQuality
SIO_000300: 5.097e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

MQRankSum
type: SiteQuality
SIO_000300: -5.94e-1

QD
type: SiteQuality
SIO_000300: 8.390000000000001e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.340000000000001e-1

GenotypeQuality
all individuals: 4241
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3626
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2082
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5198
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 766
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3015
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10691
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2185
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11680
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1248
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1234
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2353
bin: 3.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15588
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5102
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9218
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52842
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.348435814455232e-4
allele num: 7416
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

FS
type: SiteQuality
SIO_000300: 1.953e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.799e0

QD
type: SiteQuality
SIO_000300: 6.43e0

MQ
type: SiteQuality
SIO_000300: 5.874e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.6e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.577e0

MQRankSum
type: SiteQuality
SIO_000300: -1.444e0

VQSLOD
type: SiteQuality
SIO_000300: -3.194e0

DP
type: SiteQuality
SIO_000300: 1.483795e6

GenotypeQuality
all individuals: 12275
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2090
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 590
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5368
bin: 2.25e1
variant carriers: 3

GenotypeQuality
all individuals: 727
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2076
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1230
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1184
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2321
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 335
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1250
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1808
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3004
bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5114
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 778
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.890716581584421e-5
allele num: 52890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8084
num of homozygotes: 0

South Asian
type: Population
allele count: 39
allele frequency: 2.502245605030155e-3
allele num: 15586
num of homozygotes: 1

DP
type: SiteQuality
SIO_000300: 1.487308e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.5e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.22e-1

FS
type: SiteQuality
SIO_000300: 4.391e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.079e-1

QD
type: SiteQuality
SIO_000300: 1.584e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.162e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.15e-1

MQ
type: SiteQuality
SIO_000300: 4.768e1

GenotypeQuality
all individuals: 3454
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 11037
bin: 9.75e1
variant carriers: 461

GenotypeQuality
all individuals: 1493
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2394
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3022
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6012
bin: 2.25e1
variant carriers: 4

GenotypeQuality
all individuals: 155
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2153
bin: 3.75e1
variant carriers: 2

GenotypeQuality
all individuals: 13745
bin: 6.25e1
variant carriers: 5

GenotypeQuality
all individuals: 739
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1262
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2097
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 7
allele frequency: 9.02061855670103e-3
allele num: 776
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 24
allele frequency: 4.656577415599534e-3
allele num: 5154
num of homozygotes: 3

Latino
type: Population
allele count: 32
allele frequency: 3.449019185169217e-3
allele num: 9278
num of homozygotes: 1

South Asian
type: Population
allele count: 148
allele frequency: 9.459286718650135e-3
allele num: 15646
num of homozygotes: 6

African
type: Population
allele count: 8
allele frequency: 9.871668311944718e-4
allele num: 8104
num of homozygotes: 0

East Asian
type: Population
allele count: 60
allele frequency: 8.060182697474477e-3
allele num: 7444
num of homozygotes: 8

European (Non-Finnish)
type: Population
allele count: 226
allele frequency: 4.251156841352846e-3
allele num: 53162
num of homozygotes: 13

MQ
type: SiteQuality
SIO_000300: 5.472e1

QD
type: SiteQuality
SIO_000300: 1.991e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.22e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.4e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.83e-1

DP
type: SiteQuality
SIO_000300: 1.50705e6

MQRankSum
type: SiteQuality
SIO_000300: 1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.37e-1

GenotypeQuality
all individuals: 1854
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1850
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2105
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2164
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6181
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 798
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10759
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 787
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 782
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15700
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.86511489107729e-5
allele num: 53616
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9324
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5214
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7486
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.529373e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.33e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.02e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.01e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.1e-3

FS
type: SiteQuality
SIO_000300: 9.74e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.19e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.262e-1

MQ
type: SiteQuality
SIO_000300: 5.014e1

QD
type: SiteQuality
SIO_000300: 1.708e1

GenotypeQuality
all individuals: 1183
bin: 7.25e1
variant carriers: 240

GenotypeQuality
all individuals: 1346
bin: 3.75e1
variant carriers: 233

GenotypeQuality
all individuals: 1488
bin: 3.25e1
variant carriers: 215

GenotypeQuality
all individuals: 1129
bin: 2.75e1
variant carriers: 218

GenotypeQuality
all individuals: 2297
bin: 6.75e1
variant carriers: 307

GenotypeQuality
all individuals: 28536
bin: 9.75e1
variant carriers: 24565

GenotypeQuality
all individuals: 2618
bin: 7.5e0
variant carriers: 204

GenotypeQuality
all individuals: 519
bin: 5.75e1
variant carriers: 199

GenotypeQuality
all individuals: 4300
bin: 2.25e1
variant carriers: 219

GenotypeQuality
all individuals: 6372
bin: 6.25e1
variant carriers: 286

GenotypeQuality
all individuals: 646
bin: 1.75e1
variant carriers: 237

GenotypeQuality
all individuals: 720
bin: 4.25e1
variant carriers: 198

GenotypeQuality
all individuals: 1648
bin: 7.75e1
variant carriers: 317

African
type: Population
allele count: 2361
allele frequency: 2.930734856007944e-1
allele num: 8056
num of homozygotes: 434

South Asian
type: Population
allele count: 6796
allele frequency: 4.307809330628803e-1
allele num: 15776
num of homozygotes: 1570

European (Non-Finnish)
type: Population
allele count: 19720
allele frequency: 3.647393925942367e-1
allele num: 54066
num of homozygotes: 3982

European (Finnish)
type: Population
allele count: 1186
allele frequency: 2.275518035303147e-1
allele num: 5212
num of homozygotes: 188

East Asian
type: Population
allele count: 2884
allele frequency: 3.863879957127546e-1
allele num: 7464
num of homozygotes: 675

Latino
type: Population
allele count: 1764
allele frequency: 1.897998708844416e-1
allele num: 9294
num of homozygotes: 253

Other
type: Population
allele count: 267
allele frequency: 3.458549222797928e-1
allele num: 772
num of homozygotes: 55

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.448e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.39e-1

QD
type: SiteQuality
SIO_000300: 2.529e1

VQSLOD
type: SiteQuality
SIO_000300: 7.92e0

MQRankSum
type: SiteQuality
SIO_000300: 3.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.5e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.0e-2

MQ
type: SiteQuality
SIO_000300: 5.152e1

FS
type: SiteQuality
SIO_000300: 1.204e0

DP
type: SiteQuality
SIO_000300: 1.833716e6

GenotypeQuality
all individuals: 1929
bin: 7.5e0
variant carriers: 579

GenotypeQuality
all individuals: 2199
bin: 8.25e1
variant carriers: 407

GenotypeQuality
all individuals: 2046
bin: 9.25e1
variant carriers: 358

GenotypeQuality
all individuals: 953
bin: 4.25e1
variant carriers: 489

GenotypeQuality
all individuals: 606
bin: 5.75e1
variant carriers: 392

GenotypeQuality
all individuals: 3026
bin: 6.75e1
variant carriers: 434

GenotypeQuality
all individuals: 2495
bin: 2.25e1
variant carriers: 912

GenotypeQuality
all individuals: 1084
bin: 1.25e1
variant carriers: 579

GenotypeQuality
all individuals: 1467
bin: 1.75e1
variant carriers: 996

GenotypeQuality
all individuals: 2492
bin: 7.75e1
variant carriers: 395

GenotypeQuality
all individuals: 1224
bin: 4.75e1
variant carriers: 618

GenotypeQuality
all individuals: 1405
bin: 2.75e1
variant carriers: 667

GenotypeQuality
all individuals: 1792
bin: 7.25e1
variant carriers: 361

East Asian
type: Population
allele count: 984
allele frequency: 1.380471380471381e-1
allele num: 7128
num of homozygotes: 81

European (Non-Finnish)
type: Population
allele count: 10056
allele frequency: 1.885759291902637e-1
allele num: 53326
num of homozygotes: 929

South Asian
type: Population
allele count: 1683
allele frequency: 1.076637666325486e-1
allele num: 15632
num of homozygotes: 111

Other
type: Population
allele count: 104
allele frequency: 1.379310344827586e-1
allele num: 754
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 1017
allele frequency: 1.978599221789883e-1
allele num: 5140
num of homozygotes: 85

African
type: Population
allele count: 768
allele frequency: 9.53090096798213e-2
allele num: 8058
num of homozygotes: 44

Latino
type: Population
allele count: 1628
allele frequency: 1.79137323943662e-1
allele num: 9088
num of homozygotes: 139

FS
type: SiteQuality
SIO_000300: 2.521e0

MQ
type: SiteQuality
SIO_000300: 4.844e1

QD
type: SiteQuality
SIO_000300: 8.4e0

MQRankSum
type: SiteQuality
SIO_000300: -1.748e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.32e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.529e-1

DP
type: SiteQuality
SIO_000300: 1.898784e6

GenotypeQuality
all individuals: 1874
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2102
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2786
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 470
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8911
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 914
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3668
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3346
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2244
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17083
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4559
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5760
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.275835672365399e-4
allele num: 7838
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8448
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57866
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.455e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 4.95e1

DP
type: SiteQuality
SIO_000300: 1.879866e6

MQRankSum
type: SiteQuality
SIO_000300: 3.22e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.228e-1

GenotypeQuality
all individuals: 911
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1615
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1879
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17083
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1850
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1433
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4584
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2250
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2430
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1516
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3697
bin: 2.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10108
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57892
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.274534794799898e-4
allele num: 7846
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8450
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 812
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

QD
type: SiteQuality
SIO_000300: 1.153e1

MQRankSum
type: SiteQuality
SIO_000300: -8.83e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.13e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.0e-1

FS
type: SiteQuality
SIO_000300: 3.093e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.08e-1

DP
type: SiteQuality
SIO_000300: 1.879923e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.0e-2

MQ
type: SiteQuality
SIO_000300: 5.889e1

GenotypeQuality
all individuals: 1944
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1827
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17075
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4426
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1444
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2130
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 653
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1437
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2751
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 882
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2425
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 969
bin: 4.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7836
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.189650903689032e-5
allele num: 16156
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8402
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57716
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5756
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10088
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.95e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.03e-1

MQ
type: SiteQuality
SIO_000300: 5.325e1

VQSLOD
type: SiteQuality
SIO_000300: -7.503e-1

FS
type: SiteQuality
SIO_000300: 3.406e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -1.733e0

QD
type: SiteQuality
SIO_000300: 2.88e0

DP
type: SiteQuality
SIO_000300: 1.878997e6

GenotypeQuality
all individuals: 4448
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1883
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3759
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1438
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17084
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 1598
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2233
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1558
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3317
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8816
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1935
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7838
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5760
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57764
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16154
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.942947702060222e-4
allele num: 10096
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e-1

MQ
type: SiteQuality
SIO_000300: 4.995e1

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 1.642e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.2e-3

DP
type: SiteQuality
SIO_000300: 1.880831e6

FS
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.492e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.11e-1

GenotypeQuality
all individuals: 218
bin: 2.5e0
variant carriers: 9

GenotypeQuality
all individuals: 2041
bin: 3.25e1
variant carriers: 18

GenotypeQuality
all individuals: 2136
bin: 7.25e1
variant carriers: 13

GenotypeQuality
all individuals: 4256
bin: 6.75e1
variant carriers: 26

GenotypeQuality
all individuals: 3112
bin: 7.75e1
variant carriers: 26

GenotypeQuality
all individuals: 807
bin: 5.25e1
variant carriers: 13

GenotypeQuality
all individuals: 18732
bin: 9.75e1
variant carriers: 3905

GenotypeQuality
all individuals: 630
bin: 1.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1491
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 1371
bin: 4.75e1
variant carriers: 10

GenotypeQuality
all individuals: 9185
bin: 6.25e1
variant carriers: 17

GenotypeQuality
all individuals: 2570
bin: 8.25e1
variant carriers: 21

GenotypeQuality
all individuals: 1848
bin: 3.75e1
variant carriers: 24

African
type: Population
allele count: 736
allele frequency: 8.749405611031859e-2
allele num: 8412
num of homozygotes: 84

South Asian
type: Population
allele count: 636
allele frequency: 3.937105360901325e-2
allele num: 16154
num of homozygotes: 45

European (Non-Finnish)
type: Population
allele count: 2521
allele frequency: 4.369150779896014e-2
allele num: 57700
num of homozygotes: 229

Latino
type: Population
allele count: 258
allele frequency: 2.556480380499405e-2
allele num: 10092
num of homozygotes: 24

East Asian
type: Population
allele count: 47
allele frequency: 6.011767715528268e-3
allele num: 7818
num of homozygotes: 6

European (Finnish)
type: Population
allele count: 277
allele frequency: 4.817391304347826e-2
allele num: 5750
num of homozygotes: 38

Other
type: Population
allele count: 48
allele frequency: 5.911330049261083e-2
allele num: 812
num of homozygotes: 4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.24e-1

VQSLOD
type: SiteQuality
SIO_000300: 8.800000000000001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.563e-1

FS
type: SiteQuality
SIO_000300: 8.343e0

DP
type: SiteQuality
SIO_000300: 1.901686e6

MQRankSum
type: SiteQuality
SIO_000300: 7.99e-1

QD
type: SiteQuality
SIO_000300: 3.45e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.13e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.52e-1

MQ
type: SiteQuality
SIO_000300: 5.316e1