http://identifiers.org/exac.variant/10-51586313-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586313
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586313
    reference: chr 10
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1741C>A
  hgvsp: ENSP00000363200.4:p.Pro581Thr
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1243C>A
  hgvsp: ENSP00000411018.2:p.Pro415Thr
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1441C>A
  hgvsp: ENSP00000393053.2:p.Pro481Thr
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1789C>A
  hgvsp: ENSP00000405146.1:p.Pro597Thr
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1741C>A
  hgvsp: ENSP00000390713.1:p.Pro581Thr
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1789C>A
  hgvsp: ENSP00000395465.1:p.Pro597Thr
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1605C>A
  hgvsp: ENST00000374082.1:c.1605C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1741C>A
  hgvsp: ENSP00000344552.6:p.Pro581Thr
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26716
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3886
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Pro597Thr
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: European (Finnish)
reference allele: C
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

10-51586313-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586313
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586313
    reference: chr 10
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1741C>T
  hgvsp: ENSP00000390713.1:p.Pro581Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1605C>T
  hgvsp: ENST00000374082.1:c.1605C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1789C>T
  hgvsp: ENSP00000405146.1:p.Pro597Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1243C>T
  hgvsp: ENSP00000411018.2:p.Pro415Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1741C>T
  hgvsp: ENSP00000363200.4:p.Pro581Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1441C>T
  hgvsp: ENSP00000393053.2:p.Pro481Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1741C>T
  hgvsp: ENSP00000344552.6:p.Pro581Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1789C>T
  hgvsp: ENSP00000395465.1:p.Pro597Ser
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7204
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13779
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4531
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Pro597Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum

10-51586315-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586315
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586315
    reference: chr 10
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1791C>T
  hgvsp: ENST00000438493.1:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1443C>T
  hgvsp: ENST00000430396.2:c.1443C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1743C>T
  hgvsp: ENST00000374087.4:c.1743C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1743C>T
  hgvsp: ENST00000344348.6:c.1743C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1607C>T
  hgvsp: ENSP00000363195.1:p.Pro536Leu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1791C>T
  hgvsp: ENST00000452682.1:c.1791C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1245C>T
  hgvsp: ENST00000414907.2:c.1245C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1743C>T
  hgvsp: ENST00000443446.1:c.1743C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 489
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5196
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro536Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS

10-51586316-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586316
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586316
    reference: chr 10
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1744C>G
  hgvsp: ENSP00000344552.6:p.Pro582Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1246C>G
  hgvsp: ENSP00000411018.2:p.Pro416Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1792C>G
  hgvsp: ENSP00000395465.1:p.Pro598Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1744C>G
  hgvsp: ENSP00000390713.1:p.Pro582Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1444C>G
  hgvsp: ENSP00000393053.2:p.Pro482Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1792C>G
  hgvsp: ENSP00000405146.1:p.Pro598Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1744C>G
  hgvsp: ENSP00000363200.4:p.Pro582Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1608C>G
  hgvsp: ENST00000374082.1:c.1608C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13794
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro598Ala
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: QD

10-51586316-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586316
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586316
    reference: chr 10
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1744C>T
  hgvsp: ENSP00000390713.1:p.Pro582Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1744C>T
  hgvsp: ENSP00000344552.6:p.Pro582Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1744C>T
  hgvsp: ENSP00000363200.4:p.Pro582Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1246C>T
  hgvsp: ENSP00000411018.2:p.Pro416Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1792C>T
  hgvsp: ENSP00000405146.1:p.Pro598Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1444C>T
  hgvsp: ENSP00000393053.2:p.Pro482Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1608C>T
  hgvsp: ENST00000374082.1:c.1608C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1792C>T
  hgvsp: ENSP00000395465.1:p.Pro598Ser
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7205
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26716
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3884
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Pro598Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: VQSLOD

10-51586323-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586323
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586323
    reference: chr 10
allele count: 1
allele frequency: 8.2387253044209e-6
allele num: 121378
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1615A>G
  hgvsp: ENSP00000363195.1:p.Ile539Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1451A>G
  hgvsp: ENSP00000393053.2:p.His484Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1799A>G
  hgvsp: ENSP00000405146.1:p.His600Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1751A>G
  hgvsp: ENSP00000390713.1:p.His584Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1799A>G
  hgvsp: ENSP00000395465.1:p.His600Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1253A>G
  hgvsp: ENSP00000411018.2:p.His418Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1751A>G
  hgvsp: ENSP00000363200.4:p.His584Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1751A>G
  hgvsp: ENSP00000344552.6:p.His584Arg
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26715
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
hgvs: p.His600Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: Other
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

10-51586324-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586324
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586324
    reference: chr 10
allele count: 3
allele frequency: 2.47161759132627e-5
allele num: 121378
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1752T>C
  hgvsp: ENST00000344348.6:c.1752T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1254T>C
  hgvsp: ENST00000414907.2:c.1254T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1752T>C
  hgvsp: ENST00000443446.1:c.1752T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1752T>C
  hgvsp: ENST00000374087.4:c.1752T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1452T>C
  hgvsp: ENST00000430396.2:c.1452T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1616T>C
  hgvsp: ENSP00000363195.1:p.Ile539Thr
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1800T>C
  hgvsp: ENST00000438493.1:c.1800T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1800T>C
  hgvsp: ENST00000452682.1:c.1800T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1052
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7756
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2018
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile539Thr
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/10-51586326-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586326
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586326
    reference: chr 10
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1802A>C
  hgvsp: ENSP00000395465.1:p.Tyr601Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1754A>C
  hgvsp: ENSP00000363200.4:p.Tyr585Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1754A>C
  hgvsp: ENSP00000344552.6:p.Tyr585Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1454A>C
  hgvsp: ENSP00000393053.2:p.Tyr485Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1802A>C
  hgvsp: ENSP00000405146.1:p.Tyr601Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1618A>C
  hgvsp: ENSP00000363195.1:p.Met540Leu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1754A>C
  hgvsp: ENSP00000390713.1:p.Tyr585Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1256A>C
  hgvsp: ENSP00000411018.2:p.Tyr419Ser
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7757
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8094
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5205
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 26712
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr601Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

10-51586336-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586336
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586336
    reference: chr 10
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1812T>C
  hgvsp: ENST00000438493.1:c.1812T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1464T>C
  hgvsp: ENST00000430396.2:c.1464T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1266T>C
  hgvsp: ENST00000414907.2:c.1266T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1628T>C
  hgvsp: ENSP00000363195.1:p.Leu543Pro
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1764T>C
  hgvsp: ENST00000344348.6:c.1764T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1812T>C
  hgvsp: ENST00000452682.1:c.1812T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1764T>C
  hgvsp: ENST00000374087.4:c.1764T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1764T>C
  hgvsp: ENST00000443446.1:c.1764T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5198
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5577
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3893
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13796
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu543Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD

10-51586345-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586345
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586345
    reference: chr 10
allele count: 3
allele frequency: 2.471739775236463e-5
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1821T>C
  hgvsp: ENST00000452682.1:c.1821T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1821T>C
  hgvsp: ENST00000438493.1:c.1821T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1637T>C
  hgvsp: ENSP00000363195.1:p.Val546Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1473T>C
  hgvsp: ENST00000430396.2:c.1473T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1773T>C
  hgvsp: ENST00000344348.6:c.1773T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1275T>C
  hgvsp: ENST00000414907.2:c.1275T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1773T>C
  hgvsp: ENST00000374087.4:c.1773T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1773T>C
  hgvsp: ENST00000443446.1:c.1773T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5182
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5581
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val546Ala
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

10-51586347-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586347
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586347
    reference: chr 10
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1639A>G
  hgvsp: ENSP00000363195.1:p.Ile547Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1775A>G
  hgvsp: ENSP00000344552.6:p.Asp592Gly
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1823A>G
  hgvsp: ENSP00000395465.1:p.Asp608Gly
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1775A>G
  hgvsp: ENSP00000390713.1:p.Asp592Gly
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1277A>G
  hgvsp: ENSP00000411018.2:p.Asp426Gly
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1823A>G
  hgvsp: ENSP00000405146.1:p.Asp608Gly
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1775A>G
  hgvsp: ENSP00000363200.4:p.Asp592Gly
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1475A>G
  hgvsp: ENSP00000393053.2:p.Asp492Gly
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5180
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5569
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4533
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp608Gly
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum

10-51586348-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586348
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586348
    reference: chr 10
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1776T>A
  hgvsp: ENSP00000363200.4:p.Asp592Glu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1476T>A
  hgvsp: ENSP00000393053.2:p.Asp492Glu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1824T>A
  hgvsp: ENSP00000395465.1:p.Asp608Glu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1278T>A
  hgvsp: ENSP00000411018.2:p.Asp426Glu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1824T>A
  hgvsp: ENSP00000405146.1:p.Asp608Glu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1776T>A
  hgvsp: ENSP00000344552.6:p.Asp592Glu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1640T>A
  hgvsp: ENSP00000363195.1:p.Ile547Asn
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1776T>A
  hgvsp: ENSP00000390713.1:p.Asp592Glu
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5178
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 487
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2017
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Asp608Glu
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum

10-51586349-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586349
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586349
    reference: chr 10
allele count: 1
allele frequency: 8.238996819747227e-6
allele num: 121374
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1825C>G
  hgvsp: ENSP00000395465.1:p.Leu609Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1825C>G
  hgvsp: ENSP00000405146.1:p.Leu609Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1777C>G
  hgvsp: ENSP00000390713.1:p.Leu593Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1777C>G
  hgvsp: ENSP00000344552.6:p.Leu593Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1477C>G
  hgvsp: ENSP00000393053.2:p.Leu493Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1279C>G
  hgvsp: ENSP00000411018.2:p.Leu427Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1777C>G
  hgvsp: ENSP00000363200.4:p.Leu593Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1641C>G
  hgvsp: ENSP00000363195.1:p.Ile547Met
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5588
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5176
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26709
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Leu609Val
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD

10-51586351-CTT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586351
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586349
    reference: chr 10
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1781_1782delTT
  hgvsp: ENSP00000390713.1:p.Phe594CysfsTer6
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1781_1782delTT
  hgvsp: ENSP00000344552.6:p.Phe594CysfsTer6
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1283_1284delTT
  hgvsp: ENSP00000411018.2:p.Phe428CysfsTer6
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1781_1782delTT
  hgvsp: ENSP00000363200.4:p.Phe594CysfsTer6
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1829_1830delTT
  hgvsp: ENSP00000395465.1:p.Phe610CysfsTer6
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1645_1646delTT
  hgvsp: ENSP00000363195.1:p.Leu549AlafsTer21
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1829_1830delTT
  hgvsp: ENSP00000405146.1:p.Phe610CysfsTer6
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1481_1482delTT
  hgvsp: ENSP00000393053.2:p.Phe494CysfsTer6
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL96.00to97.00
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5175
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3891
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2016
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe610CysfsTer6
num of homozygotes: 0
population: African
population: East Asian
population: Other
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: CTT
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD

10-51586362-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586362
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586362
    reference: chr 10
allele count: 1
allele frequency: 8.239811473113496e-6
allele num: 121362
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1838T>G
  hgvsp: ENSP00000395465.1:p.Met613Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1490T>G
  hgvsp: ENSP00000393053.2:p.Met497Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1790T>G
  hgvsp: ENSP00000344552.6:p.Met597Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1292T>G
  hgvsp: ENSP00000411018.2:p.Met431Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1790T>G
  hgvsp: ENSP00000363200.4:p.Met597Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1790T>G
  hgvsp: ENSP00000390713.1:p.Met597Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1838T>G
  hgvsp: ENSP00000405146.1:p.Met613Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1654T>G
  hgvsp: ENSP00000363195.1:p.Cys552Gly
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8093
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5146
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1700
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13769
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Met613Arg
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD

10-51586364-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586364
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586364
    reference: chr 10
allele count: 1
allele frequency: 8.240083060037246e-6
allele num: 121358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1792C>T
  hgvsp: ENSP00000390713.1:p.Gln598Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1294C>T
  hgvsp: ENSP00000411018.2:p.Gln432Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1656C>T
  hgvsp: ENST00000374082.1:c.1656C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1792C>T
  hgvsp: ENSP00000363200.4:p.Gln598Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1840C>T
  hgvsp: ENSP00000405146.1:p.Gln614Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1840C>T
  hgvsp: ENSP00000395465.1:p.Gln614Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1792C>T
  hgvsp: ENSP00000344552.6:p.Gln598Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1492C>T
  hgvsp: ENSP00000393053.2:p.Gln498Ter
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gln614Ter
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP

10-51586366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586366
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586366
    reference: chr 10
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1296G>A
  hgvsp: ENST00000414907.2:c.1296G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1794G>A
  hgvsp: ENST00000344348.6:c.1794G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1794G>A
  hgvsp: ENST00000443446.1:c.1794G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1794G>A
  hgvsp: ENST00000374087.4:c.1794G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1658G>A
  hgvsp: ENSP00000363195.1:p.Ser553Asn
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1494G>A
  hgvsp: ENST00000430396.2:c.1494G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1842G>A
  hgvsp: ENST00000452682.1:c.1842G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1842G>A
  hgvsp: ENST00000438493.1:c.1842G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8097
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5595
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5126
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3890
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ser553Asn
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum

10-51586374-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586374
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586374
    reference: chr 10
allele count: 1
allele frequency: 8.241848811525402e-6
allele num: 121332
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1802T>C
  hgvsp: ENSP00000363200.4:p.Val601Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1304T>C
  hgvsp: ENSP00000411018.2:p.Val435Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1802T>C
  hgvsp: ENSP00000390713.1:p.Val601Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1850T>C
  hgvsp: ENSP00000395465.1:p.Val617Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1850T>C
  hgvsp: ENSP00000405146.1:p.Val617Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1802T>C
  hgvsp: ENSP00000344552.6:p.Val601Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1502T>C
  hgvsp: ENSP00000393053.2:p.Val501Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1666T>C
  hgvsp: ENST00000374082.1:c.1666T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5596
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5109
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val617Ala
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: QD

10-51586378-TAAAG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586378
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586374
    reference: chr 10
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1856_1859delAAGA
  hgvsp: ENSP00000395465.1:p.Lys619ArgfsTer15
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1808_1811delAAGA
  hgvsp: ENSP00000363200.4:p.Lys603ArgfsTer18
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1310_1313delAAGA
  hgvsp: ENSP00000411018.2:p.Lys437ArgfsTer18
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1808_1811delAAGA
  hgvsp: ENSP00000390713.1:p.Lys603ArgfsTer18
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1672_1675delAAGA
  hgvsp: ENSP00000363195.1:p.Lys558GlufsTer23
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1508_1511delAAGA
  hgvsp: ENSP00000393053.2:p.Lys503ArgfsTer18
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1856_1859delAAGA
  hgvsp: ENSP00000405146.1:p.Lys619ArgfsTer18
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1808_1811delAAGA
  hgvsp: ENSP00000344552.6:p.Lys603ArgfsTer18
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8091
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5081
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26706
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Lys619ArgfsTer15
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Other
reference allele: TAAAG
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ

10-51586380-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586380
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586380
    reference: chr 10
allele count: 1
allele frequency: 8.24334350012365e-6
allele num: 121310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1808A>T
  hgvsp: ENSP00000390713.1:p.Lys603Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1808A>T
  hgvsp: ENSP00000344552.6:p.Lys603Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1672A>T
  hgvsp: ENSP00000363195.1:p.Lys558Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1310A>T
  hgvsp: ENSP00000411018.2:p.Lys437Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1508A>T
  hgvsp: ENSP00000393053.2:p.Lys503Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1856A>T
  hgvsp: ENSP00000405146.1:p.Lys619Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1808A>T
  hgvsp: ENSP00000363200.4:p.Lys603Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1856A>T
  hgvsp: ENSP00000395465.1:p.Lys619Ile
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8156
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5071
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5579
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 102
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26706
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Lys558Ter
num of homozygotes: 0
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: DP

10-51589240-C-CAAG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589240
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589243
    reference: chr 10
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: CAAG
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.*12_*14dupAGA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.*12_*14dupAGA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.*12_*14dupAGA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: inframe_insertion
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1721_1723dupAGA
  hgvsp: ENSP00000363195.1:p.Lys574dup
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.*12_*14dupAGA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.*12_*14dupAGA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.*12_*14dupAGA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*41_*43dupAGA
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: inframe insertion
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Lys574dup
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

10-51586382-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586382
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586382
    reference: chr 10
allele count: 1
allele frequency: 8.244838730954422e-6
allele num: 121288
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1312G>C
  hgvsp: ENSP00000411018.2:p.Glu438Gln
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1858G>C
  hgvsp: ENSP00000395465.1:p.Glu620Gln
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1510G>C
  hgvsp: ENSP00000393053.2:p.Glu504Gln
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1810G>C
  hgvsp: ENSP00000390713.1:p.Glu604Gln
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1858G>C
  hgvsp: ENSP00000405146.1:p.Glu620Gln
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1674G>C
  hgvsp: ENSP00000363195.1:p.Lys558Asn
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1810G>C
  hgvsp: ENSP00000344552.6:p.Glu604Gln
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1810G>C
  hgvsp: ENSP00000363200.4:p.Glu604Gln
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1837
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1699
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5050
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8090
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1989
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu620Gln
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

10-51586388-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586388
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586388
    reference: chr 10
allele count: 4
allele frequency: 3.299023489047242e-5
allele num: 121248
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1816T>C
  hgvsp: ENSP00000390713.1:p.Trp606Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1516T>C
  hgvsp: ENSP00000393053.2:p.Trp506Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1864T>C
  hgvsp: ENSP00000405146.1:p.Trp622Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1816T>C
  hgvsp: ENSP00000344552.6:p.Trp606Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1318T>C
  hgvsp: ENSP00000411018.2:p.Trp440Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1680T>C
  hgvsp: ENST00000374082.1:c.1680T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1816T>C
  hgvsp: ENSP00000363200.4:p.Trp606Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1864T>C
  hgvsp: ENSP00000395465.1:p.Trp622Arg
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5557
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4932
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5570
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26705
  bin: 9.75e1
  variant carriers: 3
hgvs: p.Trp622Arg
num of homozygotes: 1
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: DP

10-51586393-A-AT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586393
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586394
    reference: chr 10
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: AT
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1686dupT
  hgvsp: ENSP00000363195.1:p.Ile563TyrfsTer8
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1522dupT
  hgvsp: ENSP00000393053.2:p.Tyr508LeufsTer20
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1822dupT
  hgvsp: ENSP00000344552.6:p.Tyr608LeufsTer20
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1822dupT
  hgvsp: ENSP00000390713.1:p.Tyr608LeufsTer20
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1870dupT
  hgvsp: ENSP00000405146.1:p.Tyr624LeufsTer20
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1822dupT
  hgvsp: ENSP00000363200.4:p.Tyr608LeufsTer20
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1324dupT
  hgvsp: ENSP00000411018.2:p.Tyr442LeufsTer20
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1870dupT
  hgvsp: ENSP00000395465.1:p.Tyr624LeufsTer38
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 252
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4512
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3892
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Tyr624LeufsTer38
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: QD

10-51586393-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586393
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586393
    reference: chr 10
allele count: 1
allele frequency: 8.251914444151043e-6
allele num: 121184
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1869A>G
  hgvsp: ENST00000452682.1:c.1869A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1685A>G
  hgvsp: ENSP00000363195.1:p.Tyr562Cys
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1521A>G
  hgvsp: ENST00000430396.2:c.1521A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1869A>G
  hgvsp: ENST00000438493.1:c.1869A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1821A>G
  hgvsp: ENST00000344348.6:c.1821A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1821A>G
  hgvsp: ENST00000374087.4:c.1821A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1821A>G
  hgvsp: ENST00000443446.1:c.1821A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1323A>G
  hgvsp: ENST00000414907.2:c.1323A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4813
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7758
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8096
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1698
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3888
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Tyr562Cys
num of homozygotes: 0
population: African
population: Other
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ

10-51586394-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586394
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586394
    reference: chr 10
allele count: 4
allele frequency: 3.301092661671013e-5
allele num: 121172
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1870T>C
  hgvsp: ENSP00000395465.1:p.Tyr624His
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1870T>C
  hgvsp: ENSP00000405146.1:p.Tyr624His
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1522T>C
  hgvsp: ENSP00000393053.2:p.Tyr508His
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1822T>C
  hgvsp: ENSP00000344552.6:p.Tyr608His
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1686T>C
  hgvsp: ENST00000374082.1:c.1686T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1822T>C
  hgvsp: ENSP00000363200.4:p.Tyr608His
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1324T>C
  hgvsp: ENSP00000411018.2:p.Tyr442His
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1822T>C
  hgvsp: ENSP00000390713.1:p.Tyr608His
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5549
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2011
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13296
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr624His
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ

10-51586397-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586397
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586397
    reference: chr 10
allele count: 2
allele frequency: 1.650982334489021e-5
allele num: 121140
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1873C>T
  hgvsp: ENSP00000405146.1:p.Arg625Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1825C>T
  hgvsp: ENSP00000344552.6:p.Arg609Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1825C>T
  hgvsp: ENSP00000363200.4:p.Arg609Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1689C>T
  hgvsp: ENST00000374082.1:c.1689C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1327C>T
  hgvsp: ENSP00000411018.2:p.Arg443Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1873C>T
  hgvsp: ENSP00000395465.1:p.Arg625Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1525C>T
  hgvsp: ENSP00000393053.2:p.Arg509Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1825C>T
  hgvsp: ENSP00000390713.1:p.Arg609Ter
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7764
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8158
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8112
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7207
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3842
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13167
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2010
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Arg625Ter
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

10-51586398-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586398
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586398
    reference: chr 10
allele count: 4
allele frequency: 3.302237265747544e-5
allele num: 121130
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1826G>A
  hgvsp: ENSP00000363200.4:p.Arg609Gln
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1328G>A
  hgvsp: ENSP00000411018.2:p.Arg443Gln
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1526G>A
  hgvsp: ENSP00000393053.2:p.Arg509Gln
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1874G>A
  hgvsp: ENSP00000405146.1:p.Arg625Gln
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1826G>A
  hgvsp: ENSP00000390713.1:p.Arg609Gln
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1826G>A
  hgvsp: ENSP00000344552.6:p.Arg609Gln
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1690G>A
  hgvsp: ENSP00000363195.1:p.Glu564Lys
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1874G>A
  hgvsp: ENSP00000395465.1:p.Arg625Gln
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4669
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7760
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3956
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2666
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8095
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1990
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg625Gln
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD

10-51586406-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586406
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586406
    reference: chr 10
allele count: 1
allele frequency: 8.26541913940456e-6
allele num: 120986
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1834C>G
  hgvsp: ENSP00000363200.4:p.Leu612Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1834C>G
  hgvsp: ENSP00000390713.1:p.Leu612Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1698C>G
  hgvsp: ENST00000374082.1:c.1698C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1882C>G
  hgvsp: ENSP00000395465.1:p.Leu628Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1882C>G
  hgvsp: ENSP00000405146.1:p.Leu628Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1834C>G
  hgvsp: ENSP00000344552.6:p.Leu612Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1534C>G
  hgvsp: ENSP00000393053.2:p.Leu512Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1336C>G
  hgvsp: ENSP00000411018.2:p.Leu446Val
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7763
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4435
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8088
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7206
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26698
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Leu628Val
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ

10-51586409-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586409
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586409
    reference: chr 10
allele count: 2
allele frequency: 1.654068180690408e-5
allele num: 120914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1837C>T
  hgvsp: ENSP00000363200.4:p.Gln613Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1701C>T
  hgvsp: ENST00000374082.1:c.1701C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1339C>T
  hgvsp: ENSP00000411018.2:p.Gln447Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1885C>T
  hgvsp: ENSP00000405146.1:p.Gln629Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1885C>T
  hgvsp: ENSP00000395465.1:p.Gln629Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1837C>T
  hgvsp: ENSP00000344552.6:p.Gln613Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1837C>T
  hgvsp: ENSP00000390713.1:p.Gln613Ter
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1537C>T
  hgvsp: ENSP00000393053.2:p.Gln513Ter
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8083
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7208
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4274
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 612
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5487
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7762
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8157
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12677
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4463
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gln629Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/10-51586410-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586410
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586410
    reference: chr 10
allele count: 95
allele frequency: 7.85552450096747e-4
allele num: 120934
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1886A>C
  hgvsp: ENSP00000405146.1:p.Gln629Pro
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1702A>C
  hgvsp: ENST00000374082.1:c.1702A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1886A>C
  hgvsp: ENSP00000395465.1:p.Gln629Pro
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1538A>C
  hgvsp: ENSP00000393053.2:p.Gln513Pro
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1838A>C
  hgvsp: ENSP00000344552.6:p.Gln613Pro
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1838A>C
  hgvsp: ENSP00000363200.4:p.Gln613Pro
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1340A>C
  hgvsp: ENSP00000411018.2:p.Gln447Pro
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1838A>C
  hgvsp: ENSP00000390713.1:p.Gln613Pro
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 8060
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4290
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3950
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7759
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5564
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8155
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7202
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1685
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2655
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1904
  bin: 9.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 159
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4468
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12749
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Gln629Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: A
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-51586414-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586414
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586414
    reference: chr 10
allele count: 1
allele frequency: 8.274583788435442e-6
allele num: 120852
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1887+3G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+3G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+3G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+3G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+3G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+3G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+3G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+3G>T
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8080
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4157
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8163
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7771
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2007
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4456
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3848
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.75e1
  variant carriers: 0
hgvs: c.1887+3G>T
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: VQSLOD

10-51586420-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586420
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586420
    reference: chr 10
allele count: 1
allele frequency: 8.283082632032337e-6
allele num: 120728
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+9A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+9A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1887+9A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+9A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+9A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+9A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+9A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+9A>G
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 307
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8162
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3721
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1689
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5467
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5574
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1048
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 326
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8057
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7769
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 302
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: African
reference allele: A
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

10-51586428-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586428
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586428
    reference: chr 10
allele count: 1
allele frequency: 8.303716743614441e-6
allele num: 120428
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+17A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+17A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+17A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1887+17A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+17A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+17A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+17A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+17A>G
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5573
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8009
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1046
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8159
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 593
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 463
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5253
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1403
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1991
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

10-51586431-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586431
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586431
    reference: chr 10
allele count: 5
allele frequency: 4.155516031980851e-5
allele num: 120322
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+20A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+20A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+20A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+20A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+20A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+20A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1887+20A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+20A>G
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8152
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 756
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7770
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5572
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 716
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7959
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5075
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3877
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 89
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 385
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4314
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

10-51586438-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586438
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586438
    reference: chr 10
allele count: 1
allele frequency: 8.325285557294615e-6
allele num: 120116
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1887+27T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+27T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+27T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+27T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+27T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+27T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+27T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+27T>A
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7857
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5571
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2657
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1045
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7210
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8135
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1688
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7768
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4713
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2491
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 153
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3852
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4234
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3875
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

10-51586446-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586446
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586446
    reference: chr 10
allele count: 4
allele frequency: 3.347336357093843e-5
allele num: 119498
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1887+35T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+35T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+35T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+35T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+35T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+35T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+35T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+35T>C
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5539
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7968
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7648
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7647
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1874
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1041
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3846
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 141
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 416
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD

10-51586447-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586447
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586447
    reference: chr 10
allele count: 1
allele frequency: 8.365820603342981e-6
allele num: 119534
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+36A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+36A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+36A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1887+36A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+36A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+36A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+36A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+36A>G
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1888
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3840
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 809
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

10-51586447-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586447
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586446
    reference: chr 10
allele count: 10
allele frequency: 8.365820603342982e-5
allele num: 119534
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+37delG
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+37delG
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+37delG
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+37delG
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+37delG
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+37delG
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1887+37delG
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+37delG
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2806
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5538
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1684
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 485
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2259
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7639
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7644
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7964
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3938
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 360
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3847
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1031
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: AG
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-51586454-TATAAA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586454
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586449
    reference: chr 10
allele count: 4
allele frequency: 3.356042554619593e-5
allele num: 119188
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1887+49_1887+53delATAAA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+49_1839+53delATAAA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+49_1703+53delATAAA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+49_1839+53delATAAA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+49_1839+53delATAAA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+49_1341+53delATAAA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+49_1539+53delATAAA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+49_1887+53delATAAA
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7244
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7517
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 944
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2839
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5526
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7119
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4117
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 864
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1310
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1868
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3773
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3845
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1865
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7485
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: TATAAA
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ

http://identifiers.org/exac.variant/10-51586462-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586462
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586462
    reference: chr 10
allele count: 2
allele frequency: 1.682708487581611e-5
allele num: 118856
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+51A>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+51A>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+51A>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+51A>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1887+51A>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+51A>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+51A>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+51A>C
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1040
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7291
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5524
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4375
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7449
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2714
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6134
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 484
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1683
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3936
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1981
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3761
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4819
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1413
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 330
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1565
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26639
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3839
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

10-51586572-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586572
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586572
    reference: chr 10
allele count: 0
allele frequency: 0.0e0
allele num: 24738
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1888-38G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+161G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+161G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+161G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+161G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+161G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+161G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+161G>A
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2578
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30697
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2219
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7503
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 394
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2623
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2866
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 366
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 200
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6596
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP

10-51586574-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586574
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586574
    reference: chr 10
allele count: 1
allele frequency: 4.166319473377219e-5
allele num: 24002
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+163T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+163T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1888-36T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+163T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+163T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+163T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+163T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+163T>G
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6671
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30685
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2631
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 211
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1191
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3992
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 678
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 368
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Other
population: Latino
population: South Asian
reference allele: T
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: MQ

10-51586595-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586595
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586595
    reference: chr 10
allele count: 1
allele frequency: 4.643819076808767e-5
allele num: 21534
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1888-15T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+184T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+184T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+184T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+184T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+184T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+184T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+184T>C
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26424
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2750
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1204
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 459
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1210
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25173
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1825
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 7.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

10-51586597-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586597
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586597
    reference: chr 10
allele count: 1
allele frequency: 4.670714619336758e-5
allele num: 21410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+186A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+186A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+186A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+186A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1888-13A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+186A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+186A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+186A>G
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2746
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1203
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25787
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 528
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1810
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 176
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24501
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: QD

10-51586606-C-CT
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586606
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586607
    reference: chr 10
allele count: 1
allele frequency: 4.760544606302961e-5
allele num: 21006
alternate allele: CT
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+196dupT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+196dupT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+196dupT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1888-3dupT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+196dupT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+196dupT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+196dupT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+196dupT
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: splice region
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2722
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 525
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2893
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22050
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2867
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1196
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 3.25e1
  variant carriers: 0
hgvs: c.1888-3dupT
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: DP

10-51586641-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586641
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586641
    reference: chr 10
allele count: 1
allele frequency: 4.890453834115806e-5
allele num: 20448
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+230C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+230C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+230C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+230C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1919C>T
  hgvsp: ENSP00000395465.1:p.Thr640Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+230C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+230C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+230C>T
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 466
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2585
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11070
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1153
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9822
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4300
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Thr640Ile
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

10-51586654-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586654
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586654
    reference: chr 10
allele count: 17
allele frequency: 8.349705304518664e-4
allele num: 20360
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1932T>G
  hgvsp: ENSP00000395465.1:p.Phe644Leu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+243T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+243T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+243T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+243T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+243T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+243T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+243T>G
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8671
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 276
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1149
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2579
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1375
  bin: 9.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 937
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1159
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7761
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Phe644Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS

10-51586672-CTA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586672
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586670
    reference: chr 10
allele count: 1
allele frequency: 4.949514947535141e-5
allele num: 20204
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+262_1539+263delTA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+262_1887+263delTA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: stop_lost
  consequence: frameshift_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.1951_1952delTA
  hgvsp: ENSP00000395465.1:p.Ter651Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+262_1839+263delTA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+262_1839+263delTA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+262_1703+263delTA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+262_1341+263delTA
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+262_1839+263delTA
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6552
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 516
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2759
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 740
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1141
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ter651Val
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
reference allele: CTA
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

10-51586679-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586679
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586679
    reference: chr 10
allele count: 1
allele frequency: 4.964257347100873e-5
allele num: 20144
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+268T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+268T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+268T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+268T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+268T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*4T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+268T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+268T>C
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2532
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1144
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5956
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 359
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 505
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1135
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4105
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 353
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP

10-51586698-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586698
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586698
    reference: chr 10
allele count: 1
allele frequency: 4.998000799680128e-5
allele num: 20008
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+287G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+287G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*23G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+287G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+287G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+287G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+287G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+287G>T
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 273
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 451
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4884
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 506
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2423
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 490
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3477
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 83
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1395
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1073
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
hgvs: c.*23G>T
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum

10-51586719-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51586719
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51586719
    reference: chr 10
allele count: 1
allele frequency: 5.029169181251257e-5
allele num: 19884
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1839+308C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*23+21C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1839+308C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1341+308C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1839+308C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1887+308C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1703+308C>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1539+308C>T
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1370
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1013
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 515
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1993
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 270
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 498
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 415
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 169
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 500
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 286
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2990
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

10-51589177-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589177
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589177
    reference: chr 10
allele count: 1
allele frequency: 8.242256400112095e-6
allele num: 121326
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1704-48T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1540-48T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1840-48T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1840-48T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1888-48T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*24-48T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1840-48T>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1342-48T>A
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1634
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8222
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9221
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2600
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4451
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

10-51589188-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589188
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589188
    reference: chr 10
allele count: 7
allele frequency: 5.769008884273682e-5
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1840-37T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1704-37T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1840-37T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1342-37T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1840-37T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1540-37T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1888-37T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*24-37T>C
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5308
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9612
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8268
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5305
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33785
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ

10-51589189-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589189
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589189
    reference: chr 10
allele count: 1
allele frequency: 8.241441263248117e-6
allele num: 121338
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1840-36T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1840-36T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*24-36T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1840-36T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1342-36T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1888-36T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1540-36T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1704-36T>C
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5299
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1805
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5309
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8271
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9612
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2225
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2599
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3724
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

10-51589192-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589192
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589192
    reference: chr 10
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1342-33A>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1888-33A>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1540-33A>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1704-33A>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*24-33A>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1840-33A>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1840-33A>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1840-33A>T
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8278
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33782
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3731
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

10-51589199-T-TATC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589199
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589202
    reference: chr 10
allele count: 1
allele frequency: 8.240897928238261e-6
allele num: 121346
alternate allele: TATC
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1840-22_1840-20dupATC
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1540-22_1540-20dupATC
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1840-22_1840-20dupATC
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1840-22_1840-20dupATC
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1704-22_1704-20dupATC
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*24-22_*24-20dupATC
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1888-22_1888-20dupATC
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1342-22_1342-20dupATC
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5345
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9613
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3263
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8279
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3733
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33784
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: ReadPosRankSum

10-51589205-CTGTGGG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589205
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589199
    reference: chr 10
allele count: 1
allele frequency: 8.240626287597857e-6
allele num: 121350
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1840-16_1840-11delGGGTGT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1840-16_1840-11delGGGTGT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1888-16_1888-11delGGGTGT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1540-16_1540-11delGGGTGT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1840-16_1840-11delGGGTGT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*24-16_*24-11delGGGTGT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1704-16_1704-11delGGGTGT
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1342-16_1342-11delGGGTGT
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8284
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9233
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3734
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4454
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: CTGTGGG
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: MQ

10-51589211-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589211
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589211
    reference: chr 10
allele count: 2
allele frequency: 1.647989452867502e-5
allele num: 121360
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1888-14G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1840-14G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1342-14G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1704-14G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1540-14G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*24-14G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1840-14G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1840-14G>A
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9611
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5376
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4313
  bin: 8.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD

http://identifiers.org/exac.variant/10-51589225-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589225
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589225
    reference: chr 10
allele count: 2
allele frequency: 1.647880825258717e-5
allele num: 121368
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1840A>C
  hgvsp: ENSP00000363200.4:p.Met614Leu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1840A>C
  hgvsp: ENSP00000344552.6:p.Met614Leu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1540A>C
  hgvsp: ENSP00000393053.2:p.Met514Leu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1704A>C
  hgvsp: ENSP00000363195.1:p.Arg568Ser
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1342A>C
  hgvsp: ENSP00000411018.2:p.Met448Leu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1840A>C
  hgvsp: ENSP00000390713.1:p.Met614Leu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1888A>C
  hgvsp: ENSP00000405146.1:p.Met630Leu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*24A>C
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5388
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Met614Leu
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: East Asian
population: Latino
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ

10-51589227-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589227
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589227
    reference: chr 10
allele count: 1
allele frequency: 8.239539904091756e-6
allele num: 121366
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.1344G>A
  hgvsp: ENSP00000411018.2:p.Met448Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.1842G>A
  hgvsp: ENSP00000390713.1:p.Met614Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.1842G>A
  hgvsp: ENSP00000344552.6:p.Met614Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1706G>A
  hgvsp: ENSP00000363195.1:p.Cys569Tyr
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.1842G>A
  hgvsp: ENSP00000363200.4:p.Met614Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.1890G>A
  hgvsp: ENSP00000405146.1:p.Met630Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.1542G>A
  hgvsp: ENSP00000393053.2:p.Met514Ile
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*26G>A
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5391
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9610
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met614Ile
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: Other
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum

10-51589233-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589233
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589233
    reference: chr 10
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.*3G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1712G>A
  hgvsp: ENSP00000363195.1:p.Gly571Glu
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.*3G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.*3G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.*3G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.*3G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*32G>A
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3729
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5529
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3986
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Gly571Glu
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: East Asian
population: South Asian
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ

10-51589233-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589233
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589233
    reference: chr 10
allele count: 2
allele frequency: 1.647853670594051e-5
allele num: 121370
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.*3G>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.*3G>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1712G>C
  hgvsp: ENSP00000363195.1:p.Gly571Ala
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.*3G>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.*3G>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.*3G>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*32G>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.*3G>C
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5529
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4309
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly571Ala
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

10-51589233-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589233
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589233
    reference: chr 10
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.*3G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.*3G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*32G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1712G>T
  hgvsp: ENSP00000363195.1:p.Gly571Val
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.*3G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.*3G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.*3G>T
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.*3G>T
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1334
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1839
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3986
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33786
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4309
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5529
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly571Val
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

10-51589239-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589239
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589239
    reference: chr 10
allele count: 1
allele frequency: 8.239268352970255e-6
allele num: 121370
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.*9A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.*9A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.*9A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*38A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.*9A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1718A>G
  hgvsp: ENSP00000363195.1:p.Asp573Gly
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.*9A>G
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5398
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1841
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7652
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8289
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Asp573Gly
num of homozygotes: 0
population: African
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: QD

10-51589242-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589242
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589242
    reference: chr 10
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.*12A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*41A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.*12A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.*12A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.*12A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.*12A>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1721A>G
  hgvsp: ENSP00000363195.1:p.Lys574Arg
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.*12A>G
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2001
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7653
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8287
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1333
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3264
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9234
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4456
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3727
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5523
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Lys574Arg
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD

10-51589245-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589245
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589245
    reference: chr 10
allele count: 20
allele frequency: 1.647853670594051e-4
allele num: 121370
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1724G>A
  hgvsp: ENSP00000363195.1:p.Ser575Asn
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.*15G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.*15G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.*15G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.*15G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.*15G>A
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1835
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2003
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9233
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5396
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2598
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3726
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser575Asn
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: East Asian
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum

10-51589246-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589246
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589246
    reference: chr 10
allele count: 5
allele frequency: 4.119566292060772e-5
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.*16T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.*16T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.*16T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*45T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.*16T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.*16T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1725T>C
  hgvsp: ENST00000374082.1:c.1725T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.*16T>C
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1830
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3699
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9239
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 547
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8286
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5400
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3730
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser575Ser
num of homozygotes: 0
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

10-51589247-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589247
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589247
    reference: chr 10
allele count: 7
allele frequency: 5.767392808885081e-5
allele num: 121372
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.*17T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.*17T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.*17T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.*17T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1726T>C
  hgvsp: ENSP00000363195.1:p.Ter576ArgextTer30
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*46T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.*17T>C
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.*17T>C
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3731
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3987
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4455
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ter576ArgextTer30
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: MQRankSum

10-51589247-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589247
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589247
    reference: chr 10
allele count: 1
allele frequency: 8.239132584121543e-6
allele num: 121372
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.*17T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.*17T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.*17T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: stop_lost
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.1726T>G
  hgvsp: ENSP00000363195.1:p.Ter576GlyextTer30
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.*17T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*46T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.*17T>G
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.*17T>G
  variant of: http://identifiers.org/hgnc/7671
canonical: false
consequence: stop lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 908
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 429
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5401
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8288
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 548
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9237
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 677
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1827
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9605
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3698
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3265
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4455
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2235
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Ter576GlyextTer30
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: DP

10-51589261-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 51589261
    reference: chr 10
  end: Position
    type: ExactPosition
    position: 51589261
    reference: chr 10
allele count: 7
allele frequency: 5.768058142026072e-5
allele num: 121358
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363200
  ensembl transcript: ENST00000374087
  gene symbol: NCOA4
  hgvsc: ENST00000374087.4:c.*31G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000390713
  ensembl transcript: ENST00000443446
  gene symbol: NCOA4
  hgvsc: ENST00000443446.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000395465
  ensembl transcript: ENST00000452682
  gene symbol: NCOA4
  hgvsc: ENST00000452682.1:c.*60G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000363195
  ensembl transcript: ENST00000374082
  gene symbol: NCOA4
  hgvsc: ENST00000374082.1:c.*12G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000393053
  ensembl transcript: ENST00000430396
  gene symbol: NCOA4
  hgvsc: ENST00000430396.2:c.*31G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000405146
  ensembl transcript: ENST00000438493
  gene symbol: NCOA4
  hgvsc: ENST00000438493.1:c.*31G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000344552
  ensembl transcript: ENST00000344348
  gene symbol: NCOA4
  hgvsc: ENST00000344348.6:c.*31G>A
  variant of: http://identifiers.org/hgnc/7671
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  ensembl gene: ENSG00000138293
  ensembl protein: ENSP00000411018
  ensembl transcript: ENST00000414907
  gene symbol: NCOA4
  hgvsc: ENST00000414907.2:c.*31G>A
  variant of: http://identifiers.org/hgnc/7671
canonical: true
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5297
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8291
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1999
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1330
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 907
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9241
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7651
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5393
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9604
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3696
  bin: 9.75e1
  variant carriers: 4
num of homozygotes: 0
reference allele: G

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13779
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499430216517723e-5
allele num: 66692
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.107e0

MQ
type: SiteQuality
SIO_000300: 5.855e1

VQSLOD
type: SiteQuality
SIO_000300: 1.65e-1

DP
type: SiteQuality
SIO_000300: 2.756858e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.41e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

QD
type: SiteQuality
SIO_000300: 1.154e1

GenotypeQuality
all individuals: 3886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26716
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3839
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66692
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05766900896535e-5
allele num: 16508
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.855e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.41e-2

VQSLOD
type: SiteQuality
SIO_000300: 1.65e-1

FS
type: SiteQuality
SIO_000300: 1.107e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.27e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.000000000000001e-2

QD
type: SiteQuality
SIO_000300: 1.154e1

MQRankSum
type: SiteQuality
SIO_000300: 3.44e-1

DP
type: SiteQuality
SIO_000300: 2.756858e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.61e0

GenotypeQuality
all individuals: 2017
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26717
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13788
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499295331194339e-5
allele num: 66698
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.258e0

DP
type: SiteQuality
SIO_000300: 2.756727e6

MQ
type: SiteQuality
SIO_000300: 5.354e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.83e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.494e0

QD
type: SiteQuality
SIO_000300: 8.130000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.66e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.55e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.65e-2

FS
type: SiteQuality
SIO_000300: 6.77e-1

GenotypeQuality
all individuals: 2018
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3884
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26716
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3890
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

FS
type: SiteQuality
SIO_000300: 2.493e0

MQ
type: SiteQuality
SIO_000300: 5.797e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.92e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.673e0

DP
type: SiteQuality
SIO_000300: 2.756934e6

QD
type: SiteQuality
SIO_000300: 1.223e1

GenotypeQuality
all individuals: 4529
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13794
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3890
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.673e0

MQRankSum
type: SiteQuality
SIO_000300: -4.0e-3

QD
type: SiteQuality
SIO_000300: 1.223e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 8.159999999999999e-1

FS
type: SiteQuality
SIO_000300: 2.493e0

DP
type: SiteQuality
SIO_000300: 2.756934e6

MQ
type: SiteQuality
SIO_000300: 5.797e1

VQSLOD
type: SiteQuality
SIO_000300: -1.92e0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4531
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1992
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13803
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3839
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3891
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2018
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66708
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

QD
type: SiteQuality
SIO_000300: 1.288e1

MQ
type: SiteQuality
SIO_000300: 5.684e1

DP
type: SiteQuality
SIO_000300: 2.756811e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.78e-2

FS
type: SiteQuality
SIO_000300: 1.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.23e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.28e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.8e-1

VQSLOD
type: SiteQuality
SIO_000300: -8.484e-1

GenotypeQuality
all individuals: 3840
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26714
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 3891
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13798
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497211728728189e-5
allele num: 66708
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.75e-2

VQSLOD
type: SiteQuality
SIO_000300: -1.382e0

QD
type: SiteQuality
SIO_000300: 1.509e1

MQRankSum
type: SiteQuality
SIO_000300: 8.67e-1

DP
type: SiteQuality
SIO_000300: 2.757174e6

MQ
type: SiteQuality
SIO_000300: 5.794e1

FS
type: SiteQuality
SIO_000300: 1.121e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.45e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.91e0

GenotypeQuality
all individuals: 3886
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2020
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1991
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4530
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13800
bin: 6.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66706
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.576e0

VQSLOD
type: SiteQuality
SIO_000300: -3.269e0

DP
type: SiteQuality
SIO_000300: 2.75682e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.83e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.08e0

MQRankSum
type: SiteQuality
SIO_000300: 2.12e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.589e0

QD
type: SiteQuality
SIO_000300: 1.313e1

MQ
type: SiteQuality
SIO_000300: 5.687e1

GenotypeQuality
all individuals: 18
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4533
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26712
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.012e0

MQ
type: SiteQuality
SIO_000300: 5.78e1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e0

DP
type: SiteQuality
SIO_000300: 2.756714e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e0

VQSLOD
type: SiteQuality
SIO_000300: -2.359e0

FS
type: SiteQuality
SIO_000300: 1.073e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.699999999999999e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.799e0

QD
type: SiteQuality
SIO_000300: 1.61e1

GenotypeQuality
all individuals: 1989
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26712
bin: 9.75e1
variant carriers: 3

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.497616263380409e-5
allele num: 66702
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.256e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.22e-2

MQ
type: SiteQuality
SIO_000300: 5.727e1

FS
type: SiteQuality
SIO_000300: 1.101e0

MQRankSum
type: SiteQuality
SIO_000300: 1.88e0

QD
type: SiteQuality
SIO_000300: 1.265e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.61e0

DP
type: SiteQuality
SIO_000300: 2.756875e6

VQSLOD
type: SiteQuality
SIO_000300: -1.746e0

GenotypeQuality
all individuals: 26710
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1989
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499160470136723e-5
allele num: 66704
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.415e0

DP
type: SiteQuality
SIO_000300: 2.756641e6

QD
type: SiteQuality
SIO_000300: 1.518e1

FS
type: SiteQuality
SIO_000300: 1.102e0

MQ
type: SiteQuality
SIO_000300: 5.814e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.91e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -3.889e0

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.96e0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.25e-1

DP
type: SiteQuality
SIO_000300: 2.756535e6

QD
type: SiteQuality
SIO_000300: 1.437e1

MQ
type: SiteQuality
SIO_000300: 5.666e1

BaseQRankSum
type: SiteQuality
SIO_000300: 6.07e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.547e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.65e0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1989
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variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66704
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.15e-1

DP
type: SiteQuality
SIO_000300: 2.756541e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.8e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.41e-1

MQ
type: SiteQuality
SIO_000300: 5.716e1

FS
type: SiteQuality
SIO_000300: 2.418e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.365e0

MQRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.594e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66702
num of homozygotes: 0

European (Finnish)
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allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.72e-1

MQ
type: SiteQuality
SIO_000300: 5.854e1

InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 9.63e-1

ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.75647e6

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: 9.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.721e0

QD
type: SiteQuality
SIO_000300: 2.131e1

GenotypeQuality
all individuals: 4528
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
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allele count: 1
allele frequency: 6.056935190793458e-5
allele num: 16510
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66694
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.46e0

MQ
type: SiteQuality
SIO_000300: 5.777e1

DP
type: SiteQuality
SIO_000300: 2.756238e6

MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 8.91e-1

FS
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

African
type: Population
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allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.49947518368571e-5
allele num: 66690
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.43e0

VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
SIO_000300: -5.57e0

QD
type: SiteQuality
SIO_000300: 9.84e0

MQ
type: SiteQuality
SIO_000300: 5.845e1

FS
type: SiteQuality
SIO_000300: 6.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.79e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -1.575e0

DP
type: SiteQuality
SIO_000300: 2.756292e6

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499700059988002e-5
allele num: 66680
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.6e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.505e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.2e-3

QD
type: SiteQuality
SIO_000300: 1.326e1

MQ
type: SiteQuality
SIO_000300: 5.639e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.013e0

FS
type: SiteQuality
SIO_000300: 1.799e0

DP
type: SiteQuality
SIO_000300: 2.756034e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.889e0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499835018148004e-5
allele num: 66674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.94e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.897e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

FS
type: SiteQuality
SIO_000300: 1.213e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.14e0

MQ
type: SiteQuality
SIO_000300: 5.816e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.76e0

DP
type: SiteQuality
SIO_000300: 2.755797e6

QD
type: SiteQuality
SIO_000300: 1.258e1

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.499970000599988e-5
allele num: 66668
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.23e-1

DP
type: SiteQuality
SIO_000300: 2.755346e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.396e0

FS
type: SiteQuality
SIO_000300: 9.029e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.563e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.38e-1

QD
type: SiteQuality
SIO_000300: 1.085e1

MQ
type: SiteQuality
SIO_000300: 5.672e1

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500015000150001e-5
allele num: 66666
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.001e0

FS
type: SiteQuality
SIO_000300: 5.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.172e0

QD
type: SiteQuality
SIO_000300: 1.265e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.817e1

MQRankSum
type: SiteQuality
SIO_000300: -1.076e0

DP
type: SiteQuality
SIO_000300: 2.755318e6

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
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allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
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MQ
type: SiteQuality
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MQRankSum
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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QD
type: SiteQuality
SIO_000300: 1.295e1

DP
type: SiteQuality
SIO_000300: 2.973755e6

ClippingRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16470
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.5001500150015e-5
allele num: 66660
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
type: SiteQuality
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ReadPosRankSum
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VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
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allele count: 4
allele frequency: 2.4330900243309e-4
allele num: 16440
num of homozygotes: 1

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
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QD
type: SiteQuality
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ClippingRankSum
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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MQ
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

Other
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num of homozygotes: 0

East Asian
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num of homozygotes: 0

South Asian
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VQSLOD
type: SiteQuality
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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FS
type: SiteQuality
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ReadPosRankSum
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MQRankSum
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MQ
type: SiteQuality
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QD
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SIO_000300: 1.441e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 3.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.500915558490679e-5
allele num: 66626
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16400
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e0

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 5.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.43e0

QD
type: SiteQuality
SIO_000300: 1.441e1

DP
type: SiteQuality
SIO_000300: 2.752524e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.25e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

MQ
type: SiteQuality
SIO_000300: 5.875e1

GenotypeQuality
all individuals: 4509
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 31
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1990
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.004022695205788e-5
allele num: 66622
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16392
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.17e0

DP
type: SiteQuality
SIO_000300: 2.752308e6

MQRankSum
type: SiteQuality
SIO_000300: 6.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.97e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -7.94e-1

FS
type: SiteQuality
SIO_000300: 1.339e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.2e-2

QD
type: SiteQuality
SIO_000300: 1.754e1

VQSLOD
type: SiteQuality
SIO_000300: -1.438e0

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
all individuals: 64
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
all individuals: 1990
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 3.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.108735491753207e-5
allele num: 16370
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.751572e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.74e0

QD
type: SiteQuality
SIO_000300: 1.298e1

MQRankSum
type: SiteQuality
SIO_000300: -1.58e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.36e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 1.386e0

MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.66e-1

GenotypeQuality
all individuals: 330
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.109481915933529e-5
allele num: 16368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66604
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.466605038132656e-4
allele num: 8654
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -4.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.796e1

FS
type: SiteQuality
SIO_000300: 1.429e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.283e0

VQSLOD
type: SiteQuality
SIO_000300: -1.776e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.928e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

DP
type: SiteQuality
SIO_000300: 2.751162e6

QD
type: SiteQuality
SIO_000300: 1.281e1

GenotypeQuality
all individuals: 106
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 0
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GenotypeQuality
all individuals: 1990
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variant carriers: 0

GenotypeQuality
all individuals: 2009
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 502
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variant carriers: 0

GenotypeQuality
all individuals: 3842
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16278
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66554
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 9.677e0

MQRankSum
type: SiteQuality
SIO_000300: 1.1e0

DP
type: SiteQuality
SIO_000300: 2.747547e6

QD
type: SiteQuality
SIO_000300: 1.051e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.208e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.54e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.408e0

MQ
type: SiteQuality
SIO_000300: 5.976e1

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 49
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3873
bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66536
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.727414061150458e-4
allele num: 11578
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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FS
type: SiteQuality
SIO_000300: 3.139e0

MQRankSum
type: SiteQuality
SIO_000300: -1.66e-1

DP
type: SiteQuality
SIO_000300: 2.745705e6

VQSLOD
type: SiteQuality
SIO_000300: 3.36e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.99e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.843e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.1e-3

QD
type: SiteQuality
SIO_000300: 1.469e1

MQ
type: SiteQuality
SIO_000300: 5.909e1

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 54
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 9.75e1
variant carriers: 95

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16244
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 29
allele frequency: 3.352601156069364e-3
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 53
allele frequency: 8.015728977616455e-3
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 1.953653331730336e-4
allele num: 66542
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.296e1

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

FS
type: SiteQuality
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VQSLOD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.752294e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.53e-2

BaseQRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.943e1

ReadPosRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
allele num: 66518
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East Asian
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allele num: 8648
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Other
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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DP
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 5.925e1

MQRankSum
type: SiteQuality
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BaseQRankSum
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VQSLOD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

Other
type: Population
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allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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Latino
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allele frequency: 0.0e0
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East Asian
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African
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allele frequency: 9.620935154897056e-5
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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MQRankSum
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DP
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FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -2.01e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3848
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.506024096385542e-5
allele num: 66400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8638
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10370
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.12e-1

DP
type: SiteQuality
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QD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e-1

FS
type: SiteQuality
SIO_000300: 3.595e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQ
type: SiteQuality
SIO_000300: 5.978e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: 4.77e-1

GenotypeQuality
all individuals: 1
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GenotypeQuality
all individuals: 87
bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1974
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.861003861003861e-4
allele num: 10360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66362
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15888
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.2e-1

MQ
type: SiteQuality
SIO_000300: 5.901e1

DP
type: SiteQuality
SIO_000300: 2.718071e6

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 7.27e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 3.69e0

QD
type: SiteQuality
SIO_000300: 1.617e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.18e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 8.646031471554557e-5
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15816
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66290
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.671e0

QD
type: SiteQuality
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VQSLOD
type: SiteQuality
SIO_000300: -2.392e0

MQ
type: SiteQuality
SIO_000300: 5.838e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

FS
type: SiteQuality
SIO_000300: 4.607e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.94e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.62e0

MQRankSum
type: SiteQuality
SIO_000300: 5.4e-2

DP
type: SiteQuality
SIO_000300: 2.705999e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 4

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 2.953337271116361e-4
allele num: 10158
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.513179796023364e-5
allele num: 66086
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.6814e6

VQSLOD
type: SiteQuality
SIO_000300: 8.75e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.21e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.86e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.87e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.954e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.8e-3

QD
type: SiteQuality
SIO_000300: 1.682e1

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66102
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.418485237483954e-5
allele num: 15580
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.680848e6

VQSLOD
type: SiteQuality
SIO_000300: 3.42e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.665e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

FS
type: SiteQuality
SIO_000300: 1.132e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

MQ
type: SiteQuality
SIO_000300: 5.961e1

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

QD
type: SiteQuality
SIO_000300: 1.148e1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1983
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66102
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15580
num of homozygotes: 0

East Asian
type: Population
allele count: 10
allele frequency: 1.159554730983302e-3
allele num: 8624
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.42e-1

MQ
type: SiteQuality
SIO_000300: 5.961e1

FS
type: SiteQuality
SIO_000300: 1.132e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.2e-3

DP
type: SiteQuality
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VQSLOD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -9.02e-1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.5e-1

BaseQRankSum
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 4

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15412
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.160900859066636e-4
allele num: 8614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.546556741028128e-5
allele num: 65984
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10120
num of homozygotes: 0

VQSLOD
type: SiteQuality
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FS
type: SiteQuality
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MQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 2.662737e6

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -1.118e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

MQ
type: SiteQuality
SIO_000300: 5.496e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10090
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.034901365705614e-5
allele num: 65900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15220
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European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.644919e6

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 4.58e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.586e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 140
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 480
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European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11250
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.38e0

MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -6.74e-2

FS
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 6.53315e5

GenotypeQuality
all individuals: 515
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variant carriers: 0

GenotypeQuality
all individuals: 2867
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GenotypeQuality
all individuals: 113
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 10842
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 792
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 232
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 692
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.182872013248167e-4
allele num: 8454
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
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DP
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ClippingRankSum
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VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
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SIO_000300: 1.44e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 208
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 8076
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 724
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2390
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.055966209081309e-4
allele num: 9470
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

MQRankSum
type: SiteQuality
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QD
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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DP
type: SiteQuality
SIO_000300: 5.86919e5

MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 546
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 104
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 206
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9408
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 1.242544731610338e-4
allele num: 8048
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
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VQSLOD
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ClippingRankSum
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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DP
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SIO_000300: 5.83012e5

BaseQRankSum
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SIO_000300: 3.01e0

MQRankSum
type: SiteQuality
SIO_000300: -2.2e-2

FS
type: SiteQuality
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QD
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 2336
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 706
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 9196
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 62
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 7992
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.953125e-3
allele num: 512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 202
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.057e1

QD
type: SiteQuality
SIO_000300: 1.235e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

InbreedingCoeff
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.8e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.58e-1

FS
type: SiteQuality
SIO_000300: 1.038e0

DP
type: SiteQuality
SIO_000300: 5.63223e5

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2252
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8922
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 448
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 42
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.261988894497728e-4
allele num: 7924
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 5.2257e5

FS
type: SiteQuality
SIO_000300: 2.212e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.879e0

VQSLOD
type: SiteQuality
SIO_000300: -2.097e0

MQRankSum
type: SiteQuality
SIO_000300: -4.06e-1

InbreedingCoeff
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SIO_000300: -5.55e-2

MQ
type: SiteQuality
SIO_000300: 5.905e1

QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.68e-1

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 17

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8880
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 436
num of homozygotes: 0

African
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allele count: 17
allele frequency: 7.609668755595345e-3
allele num: 2234
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 36
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 656
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7920
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 198
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.641e1

BaseQRankSum
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SIO_000300: 1.96e0

MQRankSum
type: SiteQuality
SIO_000300: 7.099999999999999e-2

DP
type: SiteQuality
SIO_000300: 5.16206e5

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 420
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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South Asian
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allele num: 7906
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African
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East Asian
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allele frequency: 0.0e0
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Other
type: Population
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QD
type: SiteQuality
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InbreedingCoeff
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MQRankSum
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DP
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ClippingRankSum
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VQSLOD
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BaseQRankSum
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FS
type: SiteQuality
SIO_000300: 5.183e0

MQ
type: SiteQuality
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.140771161305042e-4
allele num: 8766
num of homozygotes: 0

African
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East Asian
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Other
type: Population
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ClippingRankSum
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MQ
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MQRankSum
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FS
type: SiteQuality
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VQSLOD
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QD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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BaseQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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allele num: 2180
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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VQSLOD
type: SiteQuality
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MQRankSum
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BaseQRankSum
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ClippingRankSum
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FS
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DP
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InbreedingCoeff
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MQ
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 1.279754287176862e-4
allele num: 7814
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 8632
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East Asian
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allele frequency: 0.0e0
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ClippingRankSum
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BaseQRankSum
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QD
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DP
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MQRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele frequency: 0.0e0
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South Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
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European (Non-Finnish)
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allele count: 1
allele frequency: 1.499205421126803e-5
allele num: 66702
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

DP
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ReadPosRankSum
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MQ
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BaseQRankSum
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QD
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MQRankSum
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FS
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11552
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
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num of homozygotes: 0

South Asian
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allele frequency: 6.05913717886573e-5
allele num: 16504
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African
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 6
allele frequency: 8.994693131052679e-5
allele num: 66706
num of homozygotes: 0

East Asian
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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DP
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BaseQRankSum
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ClippingRankSum
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FS
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VQSLOD
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 0.0e0
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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Other
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 1.49902563333833e-5
allele num: 66710
num of homozygotes: 0

ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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QD
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FS
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MQ
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SIO_000300: 6.0e1

VQSLOD
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BaseQRankSum
type: SiteQuality
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DP
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66712
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
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SIO_000300: 4.95e-1

BaseQRankSum
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DP
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InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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FS
type: SiteQuality
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MQ
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ClippingRankSum
type: SiteQuality
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66716
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South Asian
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allele frequency: 0.0e0
allele num: 16504
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Latino
type: Population
allele count: 1
allele frequency: 8.658008658008658e-5
allele num: 11550
num of homozygotes: 0

European (Finnish)
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allele count: 0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.74e-1

ClippingRankSum
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InbreedingCoeff
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VQSLOD
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MQ
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FS
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BaseQRankSum
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QD
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DP
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Latino
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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allele frequency: 1.498845888665727e-5
allele num: 66718
num of homozygotes: 0

ClippingRankSum
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FS
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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BaseQRankSum
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DP
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MQRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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African
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Latino
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Other
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South Asian
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VQSLOD
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FS
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ClippingRankSum
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MQ
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MQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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BaseQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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European (Non-Finnish)
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African
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European (Finnish)
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East Asian
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Latino
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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ClippingRankSum
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DP
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BaseQRankSum
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FS
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VQSLOD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.609840476648087e-5
allele num: 10406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66728
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11554
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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DP
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MQ
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BaseQRankSum
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ReadPosRankSum
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QD
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MQRankSum
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FS
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InbreedingCoeff
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ClippingRankSum
type: SiteQuality
SIO_000300: 2.68e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

FS
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InbreedingCoeff
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VQSLOD
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MQRankSum
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QD
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ReadPosRankSum
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BaseQRankSum
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SIO_000300: -1.918e0

ClippingRankSum
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SIO_000300: -7.65e-1

DP
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MQ
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SIO_000300: 5.981e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 2.997152704930316e-5
allele num: 66730
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.981e1

MQRankSum
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QD
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DP
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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FS
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ReadPosRankSum
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SIO_000300: 1.11e0

BaseQRankSum
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SIO_000300: -1.918e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11556
num of homozygotes: 0

East Asian
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allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
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MQ
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BaseQRankSum
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DP
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FS
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VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 4.14e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.11e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

QD
type: SiteQuality
SIO_000300: 9.9e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.653513326410523e-5
allele num: 11556
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.17e-1

VQSLOD
type: SiteQuality
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MQ
type: SiteQuality
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DP
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ReadPosRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
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BaseQRankSum
type: SiteQuality
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FS
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SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.294e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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African
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allele count: 1
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allele num: 10406
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South Asian
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Latino
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ClippingRankSum
type: SiteQuality
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DP
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MQ
type: SiteQuality
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ReadPosRankSum
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QD
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 13
allele frequency: 1.948266043221533e-4
allele num: 66726
num of homozygotes: 0

African
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allele num: 10404
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East Asian
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South Asian
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allele frequency: 0.0e0
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Other
type: Population
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allele frequency: 2.202643171806168e-3
allele num: 908
num of homozygotes: 0

Latino
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DP
type: SiteQuality
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FS
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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BaseQRankSum
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QD
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MQ
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele frequency: 1.730103806228374e-4
allele num: 11560
num of homozygotes: 0

African
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Other
type: Population
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allele num: 908
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 2
allele frequency: 2.997332374186974e-5
allele num: 66726
num of homozygotes: 0

East Asian
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South Asian
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BaseQRankSum
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VQSLOD
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ClippingRankSum
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QD
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FS
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MQ
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DP
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MQRankSum
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ReadPosRankSum
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InbreedingCoeff
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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Other
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European (Finnish)
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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East Asian
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South Asian
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allele frequency: 4.241396025206011e-4
allele num: 16504
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VQSLOD
type: SiteQuality
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ReadPosRankSum
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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MQ
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FS
type: SiteQuality
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10406
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498666187093487e-5
allele num: 66726
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.541e0

MQRankSum
type: SiteQuality
SIO_000300: 5.88e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 8.100000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.75e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.944e1

VQSLOD
type: SiteQuality
SIO_000300: 8.67e-1

QD
type: SiteQuality
SIO_000300: 1.174e1

DP
type: SiteQuality
SIO_000300: 2.973798e6