6-35088811-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35088811
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35088811
    reference: chr 6
allele count: 19
allele frequency: 1.575978765759788e-4
allele num: 120560
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.614A>C
  hgvsp: ENSP00000404479.2:p.Gln205Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.401A>C
  hgvsp: ENSP00000415320.2:p.Gln134Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*247A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422105
  ensembl transcript: ENST00000502480
  gene symbol: TCP11
  hgvsc: ENST00000502480.1:c.12A>C
  hgvsp: ENSP00000422105.1:p.Gln5Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.167A>C
  hgvsp: ENSP00000421103.1:p.Gln56Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.476A>C
  hgvsp: ENSP00000402816.2:p.Gln159Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.629A>C
  hgvsp: ENSP00000308708.5:p.Gln210Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.491A>C
  hgvsp: ENSP00000363085.4:p.Gln164Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*655A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.404A>C
  hgvsp: ENSP00000244645.3:p.Gln135Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*670A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*558A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.404A>C
  hgvsp: ENSP00000363091.2:p.Gln135Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*247A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.590A>C
  hgvsp: ENSP00000425995.1:p.Gln197Pro
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2192
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3272
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5430
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5316
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2305
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5136
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln210Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-35088816-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35088816
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35088816
    reference: chr 6
allele count: 1
allele frequency: 8.320852055250457e-6
allele num: 120180
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.609C>T
  hgvsp: ENST00000444780.2:c.609C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.624C>T
  hgvsp: ENST00000311875.5:c.624C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*650C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*553C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.396C>T
  hgvsp: ENST00000418521.2:c.396C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.162C>T
  hgvsp: ENST00000486638.1:c.162C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.399C>T
  hgvsp: ENST00000373979.2:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422105
  ensembl transcript: ENST00000502480
  gene symbol: TCP11
  hgvsc: ENST00000502480.1:c.7C>T
  hgvsp: ENST00000502480.1:c.7C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.471C>T
  hgvsp: ENST00000412155.2:c.471C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.399C>T
  hgvsp: ENST00000244645.3:c.399C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*242C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*665C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.486C>T
  hgvsp: ENST00000373974.4:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*242C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.585C>T
  hgvsp: ENST00000512012.1:c.585C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2154
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile208Ile
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum

6-35088829-CAG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35088829
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35088827
    reference: chr 6
allele count: 17
allele frequency: 1.425528703439717e-4
allele num: 119254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*236-9_*236-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.618-9_618-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.603-9_603-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.465-9_465-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.480-9_480-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.393-9_393-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*547-9_*547-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.393-9_393-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*644-9_*644-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.579-9_579-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.156-9_156-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.390-9_390-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*659-9_*659-8delCT
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*236-9_*236-8delCT
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2609
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2119
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2129
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 966
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 532
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.618-9_618-8delCT
num of homozygotes: 0
population: Other
population: South Asian
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: CAG
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

6-35088834-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35088834
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35088834
    reference: chr 6
allele count: 9
allele frequency: 7.563152321887763e-5
allele num: 118998
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.618-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*659-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*236-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.393-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.393-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*236-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.156-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*644-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.603-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.579-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.390-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.480-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.465-12C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*547-12C>T
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 605
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2658
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2367
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6813
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 1099
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5137
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2098
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: European (Finnish)
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

6-35088835-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35088835
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35088835
    reference: chr 6
allele count: 6
allele frequency: 5.044475458626894e-5
allele num: 118942
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*236-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*659-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*644-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.393-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.618-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.390-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.603-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.156-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.465-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*547-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.393-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.579-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.480-13C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*236-13C>T
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2418
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1548
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: InbreedingCoeff

6-35088839-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35088839
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35088839
    reference: chr 6
allele count: 5
allele frequency: 4.210597231111261e-5
allele num: 118748
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.480-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.393-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*236-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*659-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.603-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.465-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.618-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*547-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.390-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*236-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.579-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.156-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.393-17C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*644-17C>G
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3923
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2052
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 704
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: G
site quality: DP
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum

6-35088839-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35088839
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35088839
    reference: chr 6
allele count: 1
allele frequency: 8.421194462222522e-6
allele num: 118748
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.393-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*659-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.465-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*644-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*236-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*236-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.603-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.579-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.480-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*547-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.618-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.156-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.393-17C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.390-17C>A
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1111
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4667
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2606
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2537
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6805
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5140
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1732
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP

6-35088849-ATAC-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35088849
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35088846
    reference: chr 6
allele count: 11
allele frequency: 9.305001015091019e-5
allele num: 118216
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*644-30_*644-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.390-30_390-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*659-30_*659-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.618-30_618-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*547-30_*547-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.603-30_603-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.156-30_156-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.465-30_465-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.579-30_579-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.480-30_480-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*236-30_*236-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*236-30_*236-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.393-30_393-28delGTA
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.393-30_393-28delGTA
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3924
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5433
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5139
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2006
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4666
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2660
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2597
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6800
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: ATAC
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

6-35088855-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35088855
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35088855
    reference: chr 6
allele count: 16216
allele frequency: 1.379662401306834e-1
allele num: 117536
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.465-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*547-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.603-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*644-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*236-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*659-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.618-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.393-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.579-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.156-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.393-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.480-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.390-33G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*236-33G>C
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5447
  bin: 6.25e1
  variant carriers: 1058
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 2.25e1
  variant carriers: 222
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 1.25e1
  variant carriers: 508
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 8.25e1
  variant carriers: 1199
genotype depth: GenotypeDepth
  all individuals: 5525
  bin: 5.75e1
  variant carriers: 867
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 7.25e1
  variant carriers: 1186
genotype depth: GenotypeDepth
  all individuals: 5190
  bin: 5.25e1
  variant carriers: 633
genotype depth: GenotypeDepth
  all individuals: 948
  bin: 1.75e1
  variant carriers: 398
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 4.75e1
  variant carriers: 469
genotype depth: GenotypeDepth
  all individuals: 6462
  bin: 9.75e1
  variant carriers: 3292
genotype depth: GenotypeDepth
  all individuals: 2628
  bin: 3.75e1
  variant carriers: 253
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 3576
  bin: 4.25e1
  variant carriers: 348
genotype quality: GenotypeQuality
num of homozygotes: 1383
population: Other
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-35088861-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35088861
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35088861
    reference: chr 6
allele count: 6
allele frequency: 5.143062865371758e-5
allele num: 116662
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.618-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.390-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.603-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*236-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*236-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*659-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.156-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.579-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*547-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.465-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*644-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.393-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.393-39A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.480-39A>T
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6136
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2576
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5718
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4605
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3293
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1922
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

6-35088869-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35088869
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35088869
    reference: chr 6
allele count: 1
allele frequency: 8.629616845012081e-6
allele num: 115880
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.618-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.393-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.603-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.579-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.393-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*236-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*644-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*659-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.156-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.390-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*236-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.480-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.465-47G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*547-47G>A
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1921
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1374
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2327
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3257
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4361
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3612
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2324
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2699
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 946
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6068
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4607
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: DP

6-35088872-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35088872
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35088872
    reference: chr 6
allele count: 2
allele frequency: 1.729385722191477e-5
allele num: 115648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.393-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.156-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.465-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.579-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.480-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*236-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.618-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*644-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.393-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*547-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.603-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*236-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.390-50G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*659-50G>C
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2294
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5493
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 929
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3226
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2700
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1113
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6064
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1920
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4606
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ClippingRankSum
site quality: InbreedingCoeff

6-35089844-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089844
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089844
    reference: chr 6
allele count: 107
allele frequency: 8.870539859397799e-4
allele num: 120624
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.155+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*546+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.464+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.479+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.602+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*235+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.392+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*235+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.578+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.389+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.392+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.617+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*643+50G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*658+50G>A
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11251
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 4806
  bin: 3.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 9339
  bin: 2.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2726
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2985
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 245
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: FS

6-35089845-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089845
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089845
    reference: chr 6
allele count: 4
allele frequency: 3.313727114572115e-5
allele num: 120710
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.392+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*546+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.578+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*658+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.479+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.389+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*235+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*235+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.155+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.464+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.602+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*643+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.617+49C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.392+49C>T
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 9474
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4782
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff

6-35089845-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089845
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089845
    reference: chr 6
allele count: 2
allele frequency: 1.656863557286057e-5
allele num: 120710
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*643+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.479+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*546+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*658+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.578+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*235+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.392+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.155+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.392+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.602+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*235+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.617+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.464+49C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.389+49C>A
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 556
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11266
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2490
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9474
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1293
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

6-35089846-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089846
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089846
    reference: chr 6
allele count: 1
allele frequency: 8.274857672448034e-6
allele num: 120848
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.155+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.617+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*546+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.464+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*643+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.602+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.389+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.392+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*235+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*235+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.578+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.392+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.479+48C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*658+48C>G
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 261
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2955
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11247
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9654
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: QD

6-35089848-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089848
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089848
    reference: chr 6
allele count: 7
allele frequency: 5.793167372881356e-5
allele num: 120832
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.392+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.602+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*658+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.155+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*643+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*235+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.617+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.389+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.464+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.392+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*235+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.479+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*546+46G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.578+46G>C
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1297
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 294
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21317
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1813
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11312
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4759
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: DP

6-35089853-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089853
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089853
    reference: chr 6
allele count: 177
allele frequency: 1.46382612722882e-3
allele num: 120916
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.389+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*658+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.464+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.617+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*235+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.155+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*643+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.578+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*546+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*235+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.392+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.602+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.392+41C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.479+41C>T
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1311
  bin: 5.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 1957
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 3.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 10653
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11431
  bin: 3.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 7.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21645
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 8.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: Other
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

6-35089858-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089858
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089858
    reference: chr 6
allele count: 79
allele frequency: 6.52633665983742e-4
allele num: 121048
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*235+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.392+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*235+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.617+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.389+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.392+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*658+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.155+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.578+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*546+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.479+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.602+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*643+36T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.464+36T>C
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11008
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 4.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 5.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 21975
  bin: 2.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: QD

6-35089867-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089867
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089867
    reference: chr 6
allele count: 1
allele frequency: 8.251369727374745e-6
allele num: 121192
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.479+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.464+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.392+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*643+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.578+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*235+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.155+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.602+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*658+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.617+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*546+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.392+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*235+27A>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.389+27A>T
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22230
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11304
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
reference allele: T
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

6-35089870-TG-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089870
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089869
    reference: chr 6
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*235+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.578+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.464+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.479+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.155+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.392+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*546+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.617+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*658+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.389+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*643+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.602+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.392+23delC
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*235+23delC
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11312
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
reference allele: TG
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum

6-35089870-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089870
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089870
    reference: chr 6
allele count: 1
allele frequency: 8.249872126982032e-6
allele num: 121214
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.392+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.464+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*235+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*235+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*546+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.578+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.617+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.602+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*658+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*643+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.479+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.155+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.392+24A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.389+24A>C
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22279
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11685
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: Other
reference allele: T
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

6-35089875-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089875
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089875
    reference: chr 6
allele count: 9
allele frequency: 7.42145625463841e-5
allele num: 121270
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.392+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.578+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.464+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*235+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.617+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*643+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.602+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.155+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.479+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.389+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*235+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*546+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.392+19C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*658+19C>T
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11712
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22397
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: QD
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-35089896-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089896
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089896
    reference: chr 6
allele count: 2
allele frequency: 1.647907980818351e-5
allele num: 121366
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.477G>C
  hgvsp: ENST00000373974.4:c.477G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.390G>C
  hgvsp: ENST00000244645.3:c.390G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*544G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*233G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*656G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*233G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.387G>C
  hgvsp: ENST00000418521.2:c.387G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.462G>C
  hgvsp: ENST00000412155.2:c.462G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.153G>C
  hgvsp: ENST00000486638.1:c.153G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.615G>C
  hgvsp: ENST00000311875.5:c.615G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.576G>C
  hgvsp: ENST00000512012.1:c.576G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.390G>C
  hgvsp: ENST00000373979.2:c.390G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.600G>C
  hgvsp: ENST00000444780.2:c.600G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*641G>C
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.615G>C
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: MQ

6-35089896-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089896
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089896
    reference: chr 6
allele count: 3
allele frequency: 2.471861971227527e-5
allele num: 121366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*641G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*656G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*233G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.390G>A
  hgvsp: ENST00000244645.3:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.615G>A
  hgvsp: ENST00000311875.5:c.615G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.462G>A
  hgvsp: ENST00000412155.2:c.462G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.576G>A
  hgvsp: ENST00000512012.1:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.600G>A
  hgvsp: ENST00000444780.2:c.600G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.153G>A
  hgvsp: ENST00000486638.1:c.153G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.387G>A
  hgvsp: ENST00000418521.2:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.477G>A
  hgvsp: ENST00000373974.4:c.477G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.390G>A
  hgvsp: ENST00000373979.2:c.390G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*233G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*544G>A
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11756
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: c.615G>A
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: QD

6-35089900-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089900
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089900
    reference: chr 6
allele count: 1
allele frequency: 8.238861059847087e-6
allele num: 121376
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*229T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.458T>C
  hgvsp: ENSP00000402816.2:p.Leu153Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.149T>C
  hgvsp: ENSP00000421103.1:p.Leu50Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.383T>C
  hgvsp: ENSP00000415320.2:p.Leu128Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.386T>C
  hgvsp: ENSP00000363091.2:p.Leu129Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*652T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.611T>C
  hgvsp: ENSP00000308708.5:p.Leu204Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.473T>C
  hgvsp: ENSP00000363085.4:p.Leu158Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*637T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.386T>C
  hgvsp: ENSP00000244645.3:p.Leu129Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*229T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.572T>C
  hgvsp: ENSP00000425995.1:p.Leu191Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.596T>C
  hgvsp: ENSP00000404479.2:p.Leu199Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*540T>C
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11752
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22568
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu204Pro
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD

6-35089913-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089913
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089913
    reference: chr 6
allele count: 4
allele frequency: 3.29489291598023e-5
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.370G>C
  hgvsp: ENSP00000415320.2:p.Asp124His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.373G>C
  hgvsp: ENSP00000363091.2:p.Asp125His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.445G>C
  hgvsp: ENSP00000402816.2:p.Asp149His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*216G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.373G>C
  hgvsp: ENSP00000244645.3:p.Asp125His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*624G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*639G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.583G>C
  hgvsp: ENSP00000404479.2:p.Asp195His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*527G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.136G>C
  hgvsp: ENSP00000421103.1:p.Asp46His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*216G>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.460G>C
  hgvsp: ENSP00000363085.4:p.Asp154His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.559G>C
  hgvsp: ENSP00000425995.1:p.Asp187His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.598G>C
  hgvsp: ENSP00000308708.5:p.Asp200His
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11229
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1955
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp200His
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: QD

6-35089915-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089915
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089915
    reference: chr 6
allele count: 3
allele frequency: 2.471128976458378e-5
allele num: 121402
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.557C>T
  hgvsp: ENSP00000425995.1:p.Thr186Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.443C>T
  hgvsp: ENSP00000402816.2:p.Thr148Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.371C>T
  hgvsp: ENSP00000244645.3:p.Thr124Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.134C>T
  hgvsp: ENSP00000421103.1:p.Thr45Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*637C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.596C>T
  hgvsp: ENSP00000308708.5:p.Thr199Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*622C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.458C>T
  hgvsp: ENSP00000363085.4:p.Thr153Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*214C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.371C>T
  hgvsp: ENSP00000363091.2:p.Thr124Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*214C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.368C>T
  hgvsp: ENSP00000415320.2:p.Thr123Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*525C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.581C>T
  hgvsp: ENSP00000404479.2:p.Thr194Met
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22587
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11765
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr199Met
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: European (Finnish)
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-35089919-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089919
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089919
    reference: chr 6
allele count: 2
allele frequency: 1.647392178181938e-5
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.553A>G
  hgvsp: ENSP00000425995.1:p.Ile185Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*210A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*633A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.439A>G
  hgvsp: ENSP00000402816.2:p.Ile147Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*618A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.364A>G
  hgvsp: ENSP00000415320.2:p.Ile122Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.367A>G
  hgvsp: ENSP00000244645.3:p.Ile123Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.577A>G
  hgvsp: ENSP00000404479.2:p.Ile193Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.367A>G
  hgvsp: ENSP00000363091.2:p.Ile123Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.454A>G
  hgvsp: ENSP00000363085.4:p.Ile152Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.592A>G
  hgvsp: ENSP00000308708.5:p.Ile198Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*210A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.130A>G
  hgvsp: ENSP00000421103.1:p.Ile44Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*521A>G
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11227
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Ile198Val
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: T
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD

6-35089921-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089921
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089921
    reference: chr 6
allele count: 2
allele frequency: 1.647365039619129e-5
allele num: 121406
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.365A>G
  hgvsp: ENSP00000244645.3:p.Asn122Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.362A>G
  hgvsp: ENSP00000415320.2:p.Asn121Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.437A>G
  hgvsp: ENSP00000402816.2:p.Asn146Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.575A>G
  hgvsp: ENSP00000404479.2:p.Asn192Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*631A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*208A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*616A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.590A>G
  hgvsp: ENSP00000308708.5:p.Asn197Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.128A>G
  hgvsp: ENSP00000421103.1:p.Asn43Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.365A>G
  hgvsp: ENSP00000363091.2:p.Asn122Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.452A>G
  hgvsp: ENSP00000363085.4:p.Asn151Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*208A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*519A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.551A>G
  hgvsp: ENSP00000425995.1:p.Asn184Ser
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2957
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn197Ser
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
reference allele: T
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-35089935-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089935
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089935
    reference: chr 6
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.114G>A
  hgvsp: ENST00000486638.1:c.114G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.351G>A
  hgvsp: ENST00000373979.2:c.351G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*194G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.576G>A
  hgvsp: ENST00000311875.5:c.576G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.423G>A
  hgvsp: ENST00000412155.2:c.423G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.438G>A
  hgvsp: ENST00000373974.4:c.438G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.351G>A
  hgvsp: ENST00000244645.3:c.351G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.561G>A
  hgvsp: ENST00000444780.2:c.561G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*602G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*617G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.348G>A
  hgvsp: ENST00000418521.2:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*505G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*194G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.537G>A
  hgvsp: ENST00000512012.1:c.537G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1121
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1954
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val192Val
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQ

6-35089937-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089937
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089937
    reference: chr 6
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.349G>A
  hgvsp: ENSP00000244645.3:p.Val117Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.574G>A
  hgvsp: ENSP00000308708.5:p.Val192Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.112G>A
  hgvsp: ENSP00000421103.1:p.Val38Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.436G>A
  hgvsp: ENSP00000363085.4:p.Val146Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.559G>A
  hgvsp: ENSP00000404479.2:p.Val187Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*615G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.535G>A
  hgvsp: ENSP00000425995.1:p.Val179Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*600G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*503G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.346G>A
  hgvsp: ENSP00000415320.2:p.Val116Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.421G>A
  hgvsp: ENSP00000402816.2:p.Val141Met
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*192G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*192G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.349G>A
  hgvsp: ENSP00000363091.2:p.Val117Met
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val192Met
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-35089938-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089938
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089938
    reference: chr 6
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*191A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.345A>G
  hgvsp: ENST00000418521.2:c.345A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.435A>G
  hgvsp: ENST00000373974.4:c.435A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*599A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*614A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.420A>G
  hgvsp: ENST00000412155.2:c.420A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.348A>G
  hgvsp: ENST00000373979.2:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*502A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.348A>G
  hgvsp: ENST00000244645.3:c.348A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*191A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.573A>G
  hgvsp: ENST00000311875.5:c.573A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.558A>G
  hgvsp: ENST00000444780.2:c.558A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.534A>G
  hgvsp: ENST00000512012.1:c.534A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.111A>G
  hgvsp: ENST00000486638.1:c.111A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11768
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1302
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11226
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22595
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1122
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala191Ala
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: Latino
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-35089948-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089948
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089948
    reference: chr 6
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*604G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*181G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.563G>A
  hgvsp: ENSP00000308708.5:p.Arg188Gln
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.338G>A
  hgvsp: ENSP00000363091.2:p.Arg113Gln
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.338G>A
  hgvsp: ENSP00000244645.3:p.Arg113Gln
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*492G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*589G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.101G>A
  hgvsp: ENSP00000421103.1:p.Arg34Gln
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.425G>A
  hgvsp: ENSP00000363085.4:p.Arg142Gln
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.335G>A
  hgvsp: ENSP00000415320.2:p.Arg112Gln
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.524G>A
  hgvsp: ENSP00000425995.1:p.Arg175Gln
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.410G>A
  hgvsp: ENSP00000402816.2:p.Arg137Gln
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*181G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.548G>A
  hgvsp: ENSP00000404479.2:p.Arg183Gln
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2956
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg188Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

6-35089949-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089949
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089949
    reference: chr 6
allele count: 14
allele frequency: 1.153098540506704e-4
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*180C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*603C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.547C>T
  hgvsp: ENSP00000404479.2:p.Arg183Ter
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.337C>T
  hgvsp: ENSP00000363091.2:p.Arg113Ter
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.562C>T
  hgvsp: ENSP00000308708.5:p.Arg188Ter
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*180C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.337C>T
  hgvsp: ENSP00000244645.3:p.Arg113Ter
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.523C>T
  hgvsp: ENSP00000425995.1:p.Arg175Ter
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.100C>T
  hgvsp: ENSP00000421103.1:p.Arg34Ter
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.424C>T
  hgvsp: ENSP00000363085.4:p.Arg142Ter
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*491C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.334C>T
  hgvsp: ENSP00000415320.2:p.Arg112Ter
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.409C>T
  hgvsp: ENSP00000402816.2:p.Arg137Ter
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*588C>T
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22593
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg188Ter
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

6-35089949-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089949
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089949
    reference: chr 6
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*491C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.523C>G
  hgvsp: ENSP00000425995.1:p.Arg175Gly
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.424C>G
  hgvsp: ENSP00000363085.4:p.Arg142Gly
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.547C>G
  hgvsp: ENSP00000404479.2:p.Arg183Gly
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*588C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*180C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*603C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.562C>G
  hgvsp: ENSP00000308708.5:p.Arg188Gly
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.334C>G
  hgvsp: ENSP00000415320.2:p.Arg112Gly
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.337C>G
  hgvsp: ENSP00000363091.2:p.Arg113Gly
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.337C>G
  hgvsp: ENSP00000244645.3:p.Arg113Gly
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.100C>G
  hgvsp: ENSP00000421103.1:p.Arg34Gly
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*180C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.409C>G
  hgvsp: ENSP00000402816.2:p.Arg137Gly
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11224
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11769
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4776
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg188Gly
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: QD

6-35089955-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089955
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089955
    reference: chr 6
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.94C>A
  hgvsp: ENSP00000421103.1:p.Pro32Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.517C>A
  hgvsp: ENSP00000425995.1:p.Pro173Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.418C>A
  hgvsp: ENSP00000363085.4:p.Pro140Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.556C>A
  hgvsp: ENSP00000308708.5:p.Pro186Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*582C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.331C>A
  hgvsp: ENSP00000244645.3:p.Pro111Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.331C>A
  hgvsp: ENSP00000363091.2:p.Pro111Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*174C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.403C>A
  hgvsp: ENSP00000402816.2:p.Pro135Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.541C>A
  hgvsp: ENSP00000404479.2:p.Pro181Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.328C>A
  hgvsp: ENSP00000415320.2:p.Pro110Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*597C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*485C>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*174C>A
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22604
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro186Thr
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ

6-35089962-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089962
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089962
    reference: chr 6
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*167G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.396G>A
  hgvsp: ENST00000412155.2:c.396G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*167G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.87G>A
  hgvsp: ENST00000486638.1:c.87G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.534G>A
  hgvsp: ENST00000444780.2:c.534G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.510G>A
  hgvsp: ENST00000512012.1:c.510G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.321G>A
  hgvsp: ENST00000418521.2:c.321G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.549G>A
  hgvsp: ENST00000311875.5:c.549G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.411G>A
  hgvsp: ENST00000373974.4:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.324G>A
  hgvsp: ENST00000244645.3:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*590G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.324G>A
  hgvsp: ENST00000373979.2:c.324G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*478G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*575G>A
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu183Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff

6-35089971-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089971
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089971
    reference: chr 6
allele count: 7
allele frequency: 5.765492702533522e-5
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.78G>A
  hgvsp: ENSP00000421103.1:p.Met26Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.315G>A
  hgvsp: ENSP00000363091.2:p.Met105Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.315G>A
  hgvsp: ENSP00000244645.3:p.Met105Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*581G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.501G>A
  hgvsp: ENSP00000425995.1:p.Met167Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.540G>A
  hgvsp: ENSP00000308708.5:p.Met180Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.387G>A
  hgvsp: ENSP00000402816.2:p.Met129Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.525G>A
  hgvsp: ENSP00000404479.2:p.Met175Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*469G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.312G>A
  hgvsp: ENSP00000415320.2:p.Met104Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*566G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.402G>A
  hgvsp: ENSP00000363085.4:p.Met134Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*158G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*158G>A
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2954
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1128
  bin: 9.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1953
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 265
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met180Ile
num of homozygotes: 0
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
population: African
population: Latino
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ

6-35089976-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089976
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089976
    reference: chr 6
allele count: 3
allele frequency: 2.471006852925672e-5
allele num: 121408
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*153A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.520A>G
  hgvsp: ENSP00000404479.2:p.Met174Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.307A>G
  hgvsp: ENSP00000415320.2:p.Met103Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.382A>G
  hgvsp: ENSP00000402816.2:p.Met128Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*576A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.310A>G
  hgvsp: ENST00000492680.2:c.310A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.73A>G
  hgvsp: ENSP00000421103.1:p.Met25Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.397A>G
  hgvsp: ENSP00000363085.4:p.Met133Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.496A>G
  hgvsp: ENSP00000425995.1:p.Met166Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.535A>G
  hgvsp: ENSP00000308708.5:p.Met179Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.310A>G
  hgvsp: ENSP00000244645.3:p.Met104Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*153A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*464A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*561A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.310A>G
  hgvsp: ENSP00000363091.2:p.Met104Val
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met179Val
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum

6-35089978-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089978
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089978
    reference: chr 6
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.71A>G
  hgvsp: ENSP00000421103.1:p.Asn24Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*559A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*574A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.308A>G
  hgvsp: ENSP00000244645.3:p.Asn103Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.518A>G
  hgvsp: ENSP00000404479.2:p.Asn173Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.308A>G
  hgvsp: ENSP00000363091.2:p.Asn103Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.395A>G
  hgvsp: ENSP00000363085.4:p.Asn132Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.533A>G
  hgvsp: ENSP00000308708.5:p.Asn178Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.494A>G
  hgvsp: ENSP00000425995.1:p.Asn165Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.305A>G
  hgvsp: ENSP00000415320.2:p.Asn102Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.380A>G
  hgvsp: ENSP00000402816.2:p.Asn127Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.308A>G
  hgvsp: ENSP00000422774.1:p.Asn103Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*151A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*151A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*462A>G
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22606
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11221
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asn178Ser
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum

6-35089985-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089985
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089985
    reference: chr 6
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.64G>A
  hgvsp: ENSP00000421103.1:p.Val22Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.301G>A
  hgvsp: ENSP00000363091.2:p.Val101Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.301G>A
  hgvsp: ENSP00000244645.3:p.Val101Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.487G>A
  hgvsp: ENSP00000425995.1:p.Val163Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*567G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.511G>A
  hgvsp: ENSP00000404479.2:p.Val171Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.388G>A
  hgvsp: ENSP00000363085.4:p.Val130Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.298G>A
  hgvsp: ENSP00000415320.2:p.Val100Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*455G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.526G>A
  hgvsp: ENSP00000308708.5:p.Val176Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*552G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.373G>A
  hgvsp: ENSP00000402816.2:p.Val125Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.301G>A
  hgvsp: ENSP00000422774.1:p.Val101Ile
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*144G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*144G>A
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11219
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11772
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22607
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val176Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum

6-35089986-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089986
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089986
    reference: chr 6
allele count: 4
allele frequency: 3.294567258590584e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.510C>T
  hgvsp: ENST00000444780.2:c.510C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*143C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.372C>T
  hgvsp: ENST00000412155.2:c.372C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.300C>T
  hgvsp: ENST00000244645.3:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*551C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.63C>T
  hgvsp: ENST00000486638.1:c.63C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.525C>T
  hgvsp: ENST00000311875.5:c.525C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*454C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.297C>T
  hgvsp: ENST00000418521.2:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.486C>T
  hgvsp: ENST00000512012.1:c.486C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*566C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.300C>T
  hgvsp: ENST00000492680.2:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.387C>T
  hgvsp: ENST00000373974.4:c.387C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*143C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.300C>T
  hgvsp: ENST00000373979.2:c.300C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11770
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1125
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1300
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr175Tyr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: African
population: Latino
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS

http://identifiers.org/exac.variant/6-35089989-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089989
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089989
    reference: chr 6
allele count: 2
allele frequency: 1.647283629295292e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.384G>T
  hgvsp: ENSP00000363085.4:p.Lys128Asn
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.294G>T
  hgvsp: ENSP00000415320.2:p.Lys98Asn
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.507G>T
  hgvsp: ENSP00000404479.2:p.Lys169Asn
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.369G>T
  hgvsp: ENSP00000402816.2:p.Lys123Asn
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.483G>T
  hgvsp: ENSP00000425995.1:p.Lys161Asn
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.297G>T
  hgvsp: ENSP00000422774.1:p.Lys99Asn
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.297G>T
  hgvsp: ENSP00000244645.3:p.Lys99Asn
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*140G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*548G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.60G>T
  hgvsp: ENSP00000421103.1:p.Lys20Asn
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.522G>T
  hgvsp: ENSP00000308708.5:p.Lys174Asn
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*140G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.297G>T
  hgvsp: ENSP00000363091.2:p.Lys99Asn
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*451G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*563G>T
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1952
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11217
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
hgvs: p.Lys174Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum

6-35089991-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089991
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089991
    reference: chr 6
allele count: 3
allele frequency: 2.470966147763776e-5
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.481A>G
  hgvsp: ENSP00000425995.1:p.Lys161Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.58A>G
  hgvsp: ENSP00000421103.1:p.Lys20Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*449A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.295A>G
  hgvsp: ENSP00000422774.1:p.Lys99Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.295A>G
  hgvsp: ENSP00000244645.3:p.Lys99Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.520A>G
  hgvsp: ENSP00000308708.5:p.Lys174Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*138A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.292A>G
  hgvsp: ENSP00000415320.2:p.Lys98Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*138A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.505A>G
  hgvsp: ENSP00000404479.2:p.Lys169Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*546A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.295A>G
  hgvsp: ENSP00000363091.2:p.Lys99Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.367A>G
  hgvsp: ENSP00000402816.2:p.Lys123Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.382A>G
  hgvsp: ENSP00000363085.4:p.Lys128Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*561A>G
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1124
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11771
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys174Glu
num of homozygotes: 1
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum

6-35089999-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35089999
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35089999
    reference: chr 6
allele count: 98
allele frequency: 8.071822749361668e-4
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.374A>G
  hgvsp: ENSP00000363085.4:p.Tyr125Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*553A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.287A>G
  hgvsp: ENSP00000363091.2:p.Tyr96Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.473A>G
  hgvsp: ENSP00000425995.1:p.Tyr158Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*441A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.287A>G
  hgvsp: ENSP00000244645.3:p.Tyr96Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.359A>G
  hgvsp: ENSP00000402816.2:p.Tyr120Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.497A>G
  hgvsp: ENSP00000404479.2:p.Tyr166Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*130A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*130A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.50A>G
  hgvsp: ENSP00000421103.1:p.Tyr17Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.287A>G
  hgvsp: ENSP00000422774.1:p.Tyr96Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.284A>G
  hgvsp: ENSP00000415320.2:p.Tyr95Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*538A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.512A>G
  hgvsp: ENSP00000308708.5:p.Tyr171Cys
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1294
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 9.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 11213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1945
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 9.75e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 563
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr171Cys
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ

6-35090001-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090001
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090001
    reference: chr 6
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*536C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.471C>G
  hgvsp: ENST00000512012.1:c.471C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.510C>G
  hgvsp: ENST00000311875.5:c.510C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.495C>G
  hgvsp: ENST00000444780.2:c.495C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.285C>G
  hgvsp: ENST00000244645.3:c.285C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.285C>G
  hgvsp: ENST00000373979.2:c.285C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.282C>G
  hgvsp: ENST00000418521.2:c.282C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.357C>G
  hgvsp: ENST00000412155.2:c.357C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*128C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.48C>G
  hgvsp: ENST00000486638.1:c.48C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*551C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*128C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.372C>G
  hgvsp: ENST00000373974.4:c.372C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.285C>G
  hgvsp: ENST00000492680.2:c.285C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*439C>G
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11220
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1949
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22610
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu170Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: Latino
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
reference allele: G
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

6-35090002-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090002
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090002
    reference: chr 6
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.284T>C
  hgvsp: ENSP00000244645.3:p.Leu95Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*127T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.509T>C
  hgvsp: ENSP00000308708.5:p.Leu170Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*550T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.470T>C
  hgvsp: ENSP00000425995.1:p.Leu157Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.494T>C
  hgvsp: ENSP00000404479.2:p.Leu165Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*438T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.281T>C
  hgvsp: ENSP00000415320.2:p.Leu94Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.284T>C
  hgvsp: ENSP00000363091.2:p.Leu95Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.47T>C
  hgvsp: ENSP00000421103.1:p.Leu16Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*127T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.356T>C
  hgvsp: ENSP00000402816.2:p.Leu119Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*535T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.284T>C
  hgvsp: ENSP00000422774.1:p.Leu95Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.371T>C
  hgvsp: ENSP00000363085.4:p.Leu124Pro
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu170Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: QD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ

6-35090008-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090008
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090008
    reference: chr 6
allele count: 1
allele frequency: 8.236553825879253e-6
allele num: 121410
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.464A>G
  hgvsp: ENSP00000425995.1:p.Lys155Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.488A>G
  hgvsp: ENSP00000404479.2:p.Lys163Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.278A>G
  hgvsp: ENSP00000363091.2:p.Lys93Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*121A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.365A>G
  hgvsp: ENSP00000363085.4:p.Lys122Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.275A>G
  hgvsp: ENSP00000415320.2:p.Lys92Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.41A>G
  hgvsp: ENSP00000421103.1:p.Lys14Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*432A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*529A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.278A>G
  hgvsp: ENSP00000244645.3:p.Lys93Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*544A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.278A>G
  hgvsp: ENSP00000422774.1:p.Lys93Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.503A>G
  hgvsp: ENSP00000308708.5:p.Lys168Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*121A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.350A>G
  hgvsp: ENSP00000402816.2:p.Lys117Arg
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 22614
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11215
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Lys168Arg
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: T
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

http://identifiers.org/exac.variant/6-35090015-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090015
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090015
    reference: chr 6
allele count: 8
allele frequency: 6.589134517181169e-5
allele num: 121412
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.358G>T
  hgvsp: ENSP00000363085.4:p.Ala120Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.481G>T
  hgvsp: ENSP00000404479.2:p.Ala161Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.457G>T
  hgvsp: ENSP00000425995.1:p.Ala153Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*522G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*114G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*537G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.496G>T
  hgvsp: ENSP00000308708.5:p.Ala166Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.271G>T
  hgvsp: ENSP00000244645.3:p.Ala91Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.268G>T
  hgvsp: ENSP00000415320.2:p.Ala90Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*425G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.34G>T
  hgvsp: ENSP00000421103.1:p.Ala12Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.271G>T
  hgvsp: ENSP00000363091.2:p.Ala91Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.343G>T
  hgvsp: ENSP00000402816.2:p.Ala115Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.271G>T
  hgvsp: ENSP00000422774.1:p.Ala91Ser
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*114G>T
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 271
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala166Ser
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff

6-35090020-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090020
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090020
    reference: chr 6
allele count: 2
allele frequency: 1.647337901950448e-5
allele num: 121408
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.266A>C
  hgvsp: ENSP00000363091.2:p.His89Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.266A>C
  hgvsp: ENSP00000422774.1:p.His89Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.338A>C
  hgvsp: ENSP00000402816.2:p.His113Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.476A>C
  hgvsp: ENSP00000404479.2:p.His159Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.353A>C
  hgvsp: ENSP00000363085.4:p.His118Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*109A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.29A>C
  hgvsp: ENSP00000421103.1:p.His10Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.263A>C
  hgvsp: ENSP00000415320.2:p.His88Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.266A>C
  hgvsp: ENSP00000244645.3:p.His89Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.491A>C
  hgvsp: ENSP00000308708.5:p.His164Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.452A>C
  hgvsp: ENSP00000425995.1:p.His151Pro
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*532A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*517A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*420A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*109A>C
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22618
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.His164Pro
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: T
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: ReadPosRankSum

6-35090022-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090022
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090022
    reference: chr 6
allele count: 1
allele frequency: 8.236418146476461e-6
allele num: 121412
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.261A>G
  hgvsp: ENST00000418521.2:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.336A>G
  hgvsp: ENST00000412155.2:c.336A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*530A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*515A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.489A>G
  hgvsp: ENST00000311875.5:c.489A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.264A>G
  hgvsp: ENST00000373979.2:c.264A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.27A>G
  hgvsp: ENST00000486638.1:c.27A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*107A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.264A>G
  hgvsp: ENST00000244645.3:c.264A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*107A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.450A>G
  hgvsp: ENST00000512012.1:c.450A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.474A>G
  hgvsp: ENST00000444780.2:c.474A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.351A>G
  hgvsp: ENST00000373974.4:c.351A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.264A>G
  hgvsp: ENST00000492680.2:c.264A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*418A>G
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4768
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2949
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22620
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu163Glu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: QD

6-35090033-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090033
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090033
    reference: chr 6
allele count: 1
allele frequency: 8.236960890909689e-6
allele num: 121404
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.250C>G
  hgvsp: ENSP00000415320.2:p.Gln84Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.478C>G
  hgvsp: ENSP00000308708.5:p.Gln160Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.253C>G
  hgvsp: ENSP00000363091.2:p.Gln85Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.253C>G
  hgvsp: ENSP00000244645.3:p.Gln85Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.253C>G
  hgvsp: ENSP00000422774.1:p.Gln85Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*407C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*96C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.250C>G
  hgvsp: ENSP00000423183.1:p.Gln84Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.463C>G
  hgvsp: ENSP00000404479.2:p.Gln155Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.16C>G
  hgvsp: ENSP00000421103.1:p.Gln6Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.325C>G
  hgvsp: ENSP00000402816.2:p.Gln109Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*504C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.340C>G
  hgvsp: ENSP00000363085.4:p.Gln114Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.439C>G
  hgvsp: ENSP00000425995.1:p.Gln147Glu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*519C>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*96C>G
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11767
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2952
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 220
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln160Glu
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: DP

6-35090035-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090035
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090035
    reference: chr 6
allele count: 1
allele frequency: 8.237096588194593e-6
allele num: 121402
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.251A>G
  hgvsp: ENSP00000244645.3:p.Lys84Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.251A>G
  hgvsp: ENSP00000363091.2:p.Lys84Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.251A>G
  hgvsp: ENSP00000422774.1:p.Lys84Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*517A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*94A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*94A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.323A>G
  hgvsp: ENSP00000402816.2:p.Lys108Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.248A>G
  hgvsp: ENSP00000423183.1:p.Lys83Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.14A>G
  hgvsp: ENSP00000421103.1:p.Lys5Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.476A>G
  hgvsp: ENSP00000308708.5:p.Lys159Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.338A>G
  hgvsp: ENSP00000363085.4:p.Lys113Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.248A>G
  hgvsp: ENSP00000415320.2:p.Lys83Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.437A>G
  hgvsp: ENSP00000425995.1:p.Lys146Arg
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*502A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*405A>G
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.461A>G
  hgvsp: ENSP00000404479.2:p.Lys154Arg
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11211
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1947
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Lys159Arg
num of homozygotes: 0
population: African
population: South Asian
population: East Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: QD

6-35090040-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090040
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090040
    reference: chr 6
allele count: 88
allele frequency: 7.248406174324169e-4
allele num: 121406
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.246G>A
  hgvsp: ENST00000373979.2:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*497G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*89G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*400G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.243G>A
  hgvsp: ENST00000418521.2:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.243G>A
  hgvsp: ENST00000507706.1:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.246G>A
  hgvsp: ENST00000244645.3:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.318G>A
  hgvsp: ENST00000412155.2:c.318G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.432G>A
  hgvsp: ENST00000512012.1:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.9G>A
  hgvsp: ENST00000486638.1:c.9G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*89G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.246G>A
  hgvsp: ENST00000492680.2:c.246G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.333G>A
  hgvsp: ENST00000373974.4:c.333G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.471G>A
  hgvsp: ENST00000311875.5:c.471G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*512G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.456G>A
  hgvsp: ENST00000444780.2:c.456G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1937
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11210
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu157Leu
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Latino
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

6-35090047-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090047
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090047
    reference: chr 6
allele count: 1
allele frequency: 8.237232289950576e-6
allele num: 121400
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*82T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*82T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.425T>C
  hgvsp: ENSP00000425995.1:p.Met142Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.239T>C
  hgvsp: ENSP00000422774.1:p.Met80Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*505T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.239T>C
  hgvsp: ENSP00000244645.3:p.Met80Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.449T>C
  hgvsp: ENSP00000404479.2:p.Met150Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*490T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.464T>C
  hgvsp: ENSP00000308708.5:p.Met155Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.236T>C
  hgvsp: ENSP00000415320.2:p.Met79Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: start_lost
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.2T>C
  hgvsp: ENSP00000421103.1:p.Met1?
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*393T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.239T>C
  hgvsp: ENSP00000363091.2:p.Met80Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.326T>C
  hgvsp: ENSP00000363085.4:p.Met109Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.311T>C
  hgvsp: ENSP00000402816.2:p.Met104Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.236T>C
  hgvsp: ENSP00000423183.1:p.Met79Thr
  variant of: http://identifiers.org/hgnc/11658
canonical: false
consequence: start lost
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2937
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met1?
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: African
population: South Asian
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

6-35090050-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090050
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090050
    reference: chr 6
allele count: 3
allele frequency: 2.471251112063001e-5
allele num: 121396
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.236A>C
  hgvsp: ENSP00000422774.1:p.Asp79Ala
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.461A>C
  hgvsp: ENSP00000308708.5:p.Asp154Ala
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.236A>C
  hgvsp: ENSP00000363091.2:p.Asp79Ala
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*502A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.236A>C
  hgvsp: ENSP00000244645.3:p.Asp79Ala
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.323A>C
  hgvsp: ENSP00000363085.4:p.Asp108Ala
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*487A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.422A>C
  hgvsp: ENSP00000425995.1:p.Asp141Ala
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.233A>C
  hgvsp: ENSP00000423183.1:p.Asp78Ala
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.446A>C
  hgvsp: ENSP00000404479.2:p.Asp149Ala
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.233A>C
  hgvsp: ENSP00000415320.2:p.Asp78Ala
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*79A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.-2A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*79A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*390A>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.308A>C
  hgvsp: ENSP00000402816.2:p.Asp103Ala
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1290
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2936
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 401
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Asp154Ala
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD

6-35090056-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090056
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090056
    reference: chr 6
allele count: 1
allele frequency: 8.237775141689733e-6
allele num: 121392
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*496C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.-8C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.230C>T
  hgvsp: ENSP00000244645.3:p.Ala77Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.440C>T
  hgvsp: ENSP00000404479.2:p.Ala147Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.230C>T
  hgvsp: ENSP00000422774.1:p.Ala77Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.455C>T
  hgvsp: ENSP00000308708.5:p.Ala152Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.302C>T
  hgvsp: ENSP00000402816.2:p.Ala101Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.317C>T
  hgvsp: ENSP00000363085.4:p.Ala106Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.227C>T
  hgvsp: ENSP00000415320.2:p.Ala76Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.416C>T
  hgvsp: ENSP00000425995.1:p.Ala139Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*73C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.227C>T
  hgvsp: ENSP00000423183.1:p.Ala76Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*481C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*73C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.230C>T
  hgvsp: ENSP00000363091.2:p.Ala77Val
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*384C>T
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala152Val
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: Latino
population: East Asian
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD

6-35090065-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090065
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090065
    reference: chr 6
allele count: 8
allele frequency: 6.590220113351786e-5
allele num: 121392
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.218T>C
  hgvsp: ENSP00000415320.2:p.Ile73Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.221T>C
  hgvsp: ENSP00000244645.3:p.Ile74Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*375T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.218T>C
  hgvsp: ENSP00000423183.1:p.Ile73Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.221T>C
  hgvsp: ENSP00000363091.2:p.Ile74Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*64T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.-17T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.407T>C
  hgvsp: ENSP00000425995.1:p.Ile136Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425849
  ensembl transcript: ENST00000479418
  gene symbol: TCP11
  hgvsc: ENST00000479418.2:c.*613T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.446T>C
  hgvsp: ENSP00000308708.5:p.Ile149Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.308T>C
  hgvsp: ENSP00000363085.4:p.Ile103Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*64T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.293T>C
  hgvsp: ENSP00000402816.2:p.Ile98Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*487T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.221T>C
  hgvsp: ENSP00000422774.1:p.Ile74Thr
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*472T>C
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.431T>C
  hgvsp: ENSP00000404479.2:p.Ile144Thr
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile149Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

6-35090074-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090074
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090074
    reference: chr 6
allele count: 1
allele frequency: 8.237910865804433e-6
allele num: 121390
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*366G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: incomplete_terminal_codon_variant
  consequence: coding_sequence_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421333
  ensembl transcript: ENST00000505400
  gene symbol: TCP11
  hgvsc: ENST00000505400.1:c.209G>A
  hgvsp: ENST00000505400.1:c.209G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.-26G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.284G>A
  hgvsp: ENSP00000402816.2:p.Arg95Lys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.212G>A
  hgvsp: ENSP00000244645.3:p.Arg71Lys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.209G>A
  hgvsp: ENSP00000423183.1:p.Arg70Lys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.437G>A
  hgvsp: ENSP00000308708.5:p.Arg146Lys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.212G>A
  hgvsp: ENSP00000422774.1:p.Arg71Lys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*55G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*478G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*55G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425849
  ensembl transcript: ENST00000479418
  gene symbol: TCP11
  hgvsc: ENST00000479418.2:c.*604G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.212G>A
  hgvsp: ENSP00000363091.2:p.Arg71Lys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.422G>A
  hgvsp: ENSP00000404479.2:p.Arg141Lys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.209G>A
  hgvsp: ENSP00000415320.2:p.Arg70Lys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.398G>A
  hgvsp: ENSP00000425995.1:p.Arg133Lys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.299G>A
  hgvsp: ENSP00000363085.4:p.Arg100Lys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*463G>A
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg146Lys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: ClippingRankSum

6-35090080-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090080
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090080
    reference: chr 6
allele count: 2
allele frequency: 1.647717910693689e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.416G>A
  hgvsp: ENSP00000404479.2:p.Arg139His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.-32G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425849
  ensembl transcript: ENST00000479418
  gene symbol: TCP11
  hgvsc: ENST00000479418.2:c.*598G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.293G>A
  hgvsp: ENSP00000363085.4:p.Arg98His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*457G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.278G>A
  hgvsp: ENSP00000402816.2:p.Arg93His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.206G>A
  hgvsp: ENSP00000363091.2:p.Arg69His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.206G>A
  hgvsp: ENSP00000422774.1:p.Arg69His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*360G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*49G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.392G>A
  hgvsp: ENSP00000425995.1:p.Arg131His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.203G>A
  hgvsp: ENSP00000415320.2:p.Arg68His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*472G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421333
  ensembl transcript: ENST00000505400
  gene symbol: TCP11
  hgvsc: ENST00000505400.1:c.203G>A
  hgvsp: ENSP00000421333.1:p.Arg68His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.206G>A
  hgvsp: ENSP00000244645.3:p.Arg69His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.203G>A
  hgvsp: ENSP00000423183.1:p.Arg68His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*49G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.431G>A
  hgvsp: ENSP00000308708.5:p.Arg144His
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1291
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg144His
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
population: Latino
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-35090081-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090081
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090081
    reference: chr 6
allele count: 1
allele frequency: 8.238453806989504e-6
allele num: 121382
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425849
  ensembl transcript: ENST00000479418
  gene symbol: TCP11
  hgvsc: ENST00000479418.2:c.*597C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.277C>T
  hgvsp: ENSP00000402816.2:p.Arg93Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.202C>T
  hgvsp: ENSP00000415320.2:p.Arg68Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*456C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.391C>T
  hgvsp: ENSP00000425995.1:p.Arg131Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.205C>T
  hgvsp: ENSP00000244645.3:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*359C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.-33C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.415C>T
  hgvsp: ENSP00000404479.2:p.Arg139Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.205C>T
  hgvsp: ENSP00000363091.2:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.292C>T
  hgvsp: ENSP00000363085.4:p.Arg98Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*48C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.430C>T
  hgvsp: ENSP00000308708.5:p.Arg144Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*48C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.202C>T
  hgvsp: ENSP00000423183.1:p.Arg68Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.205C>T
  hgvsp: ENSP00000422774.1:p.Arg69Cys
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*471C>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421333
  ensembl transcript: ENST00000505400
  gene symbol: TCP11
  hgvsc: ENST00000505400.1:c.202C>T
  hgvsp: ENSP00000421333.1:p.Arg68Cys
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Arg144Cys
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Latino
population: African
population: Other
reference allele: G
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum

6-35090085-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090085
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090085
    reference: chr 6
allele count: 8
allele frequency: 6.590871642774756e-5
allele num: 121380
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.-37G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.201G>A
  hgvsp: ENST00000244645.3:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425995
  ensembl transcript: ENST00000512012
  gene symbol: TCP11
  hgvsc: ENST00000512012.1:c.387G>A
  hgvsp: ENST00000512012.1:c.387G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.426G>A
  hgvsp: ENST00000311875.5:c.426G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.201G>A
  hgvsp: ENST00000492680.2:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.198G>A
  hgvsp: ENST00000418521.2:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*44G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.288G>A
  hgvsp: ENST00000373974.4:c.288G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.201G>A
  hgvsp: ENST00000373979.2:c.201G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.411G>A
  hgvsp: ENST00000444780.2:c.411G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425849
  ensembl transcript: ENST00000479418
  gene symbol: TCP11
  hgvsc: ENST00000479418.2:c.*593G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421333
  ensembl transcript: ENST00000505400
  gene symbol: TCP11
  hgvsc: ENST00000505400.1:c.198G>A
  hgvsp: ENST00000505400.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.198G>A
  hgvsp: ENST00000507706.1:c.198G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.273G>A
  hgvsp: ENST00000412155.2:c.273G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421386
  ensembl transcript: ENST00000509988
  gene symbol: TCP11
  hgvsc: ENST00000509988.1:c.*266G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*467G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*44G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*355G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*452G>A
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Gln142Gln
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: DP
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-35090089-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090089
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090089
    reference: chr 6
allele count: 7
allele frequency: 5.767772980455489e-5
allele num: 121364
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.197G>T
  hgvsp: ENSP00000422774.1:p.Arg66Leu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.197G>T
  hgvsp: ENSP00000363091.2:p.Arg66Leu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000244645
  ensembl transcript: ENST00000244645
  gene symbol: TCP11
  hgvsc: ENST00000244645.3:c.197G>T
  hgvsp: ENSP00000244645.3:p.Arg66Leu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000404479
  ensembl transcript: ENST00000444780
  gene symbol: TCP11
  hgvsc: ENST00000444780.2:c.407G>T
  hgvsp: ENSP00000404479.2:p.Arg136Leu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*40G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.269G>T
  hgvsp: ENSP00000402816.2:p.Arg90Leu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000308708
  ensembl transcript: ENST00000311875
  gene symbol: TCP11
  hgvsc: ENST00000311875.5:c.422G>T
  hgvsp: ENSP00000308708.5:p.Arg141Leu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*40G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421386
  ensembl transcript: ENST00000509988
  gene symbol: TCP11
  hgvsc: ENST00000509988.1:c.*262G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.194G>T
  hgvsp: ENSP00000415320.2:p.Arg65Leu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*351G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.194G>T
  hgvsp: ENSP00000423183.1:p.Arg65Leu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421333
  ensembl transcript: ENST00000505400
  gene symbol: TCP11
  hgvsc: ENST00000505400.1:c.194G>T
  hgvsp: ENSP00000421333.1:p.Arg65Leu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000424209
  ensembl transcript: ENST00000505335
  gene symbol: TCP11
  hgvsc: ENST00000505335.1:c.*252G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421916
  ensembl transcript: ENST00000504758
  gene symbol: TCP11
  hgvsc: ENST00000504758.1:c.*463G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 5_prime_UTR_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421103
  ensembl transcript: ENST00000486638
  gene symbol: TCP11
  hgvsc: ENST00000486638.1:c.-41G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425849
  ensembl transcript: ENST00000479418
  gene symbol: TCP11
  hgvsc: ENST00000479418.2:c.*589G>T
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.284G>T
  hgvsp: ENSP00000363085.4:p.Arg95Leu
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*448G>T
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
genotype quality: GenotypeQuality
hgvs: p.Arg141Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: C
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD

6-35090089-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 35090089
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 35090089
    reference: chr 6
allele count: 4
allele frequency: 3.295870274545994e-5
allele num: 121364
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363085
  ensembl transcript: ENST00000373974
  gene symbol: TCP11
  hgvsc: ENST00000373974.4:c.284G>A
  hgvsp: ENSP00000363085.4:p.Arg95His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000425849
  ensembl transcript: ENST00000479418
  gene symbol: TCP11
  hgvsc: ENST00000479418.2:c.*589G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423183
  ensembl transcript: ENST00000507706
  gene symbol: TCP11
  hgvsc: ENST00000507706.1:c.194G>A
  hgvsp: ENSP00000423183.1:p.Arg65His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421333
  ensembl transcript: ENST00000505400
  gene symbol: TCP11
  hgvsc: ENST00000505400.1:c.194G>A
  hgvsp: ENSP00000421333.1:p.Arg65His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000423293
  ensembl transcript: ENST00000505911
  gene symbol: TCP11
  hgvsc: ENST00000505911.1:c.*448G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000402816
  ensembl transcript: ENST00000412155
  gene symbol: TCP11
  hgvsc: ENST00000412155.2:c.269G>A
  hgvsp: ENSP00000402816.2:p.Arg90His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000421386
  ensembl transcript: ENST00000509988
  gene symbol: TCP11
  hgvsc: ENST00000509988.1:c.*262G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000399012
  ensembl transcript: ENST00000455706
  gene symbol: TCP11
  hgvsc: ENST00000455706.2:c.*351G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000363091
  ensembl transcript: ENST00000373979
  gene symbol: TCP11
  hgvsc: ENST00000373979.2:c.197G>A
  hgvsp: ENSP00000363091.2:p.Arg66His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422774
  ensembl transcript: ENST00000492680
  gene symbol: TCP11
  hgvsc: ENST00000492680.2:c.197G>A
  hgvsp: ENSP00000422774.1:p.Arg66His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415562
  ensembl transcript: ENST00000427376
  gene symbol: TCP11
  hgvsc: ENST00000427376.2:c.*40G>A
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000415320
  ensembl transcript: ENST00000418521
  gene symbol: TCP11
  hgvsc: ENST00000418521.2:c.194G>A
  hgvsp: ENSP00000415320.2:p.Arg65His
  variant of: http://identifiers.org/hgnc/11658
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000124678
  ensembl protein: ENSP00000422259
  ensembl transcript: ENST00000469514
  gene symbol: TCP11
  hgvsc: ENST00000469514.1:c.*40G>A
  variant of: http://identifiers.org/hgnc/11658
canonical: true
consequence: missense
filter: PASS
hgvs: p.Arg141His
num of homozygotes: 0
reference allele: C

GenotypeDepth
all individuals: 4665
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3330
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2098
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 410
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 6835
bin: 9.75e1
variant carriers: 19

GenotypeDepth
all individuals: 3921
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2620
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1734
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 666
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2660
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 611
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Latino
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allele num: 11570
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East Asian
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European (Non-Finnish)
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European (Finnish)
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African
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Other
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InbreedingCoeff
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MQ
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QD
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BaseQRankSum
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MQRankSum
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DP
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VQSLOD
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FS
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ReadPosRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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QD
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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VQSLOD
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FS
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ReadPosRankSum
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 1.143549038073456e-3
allele num: 14866
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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Latino
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African
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European (Non-Finnish)
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FS
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InbreedingCoeff
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ReadPosRankSum
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BaseQRankSum
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QD
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DP
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MQRankSum
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VQSLOD
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MQ
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Non-Finnish)
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num of homozygotes: 0

South Asian
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Other
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Latino
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European (Finnish)
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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FS
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BaseQRankSum
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MQ
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ReadPosRankSum
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ClippingRankSum
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Latino
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African
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European (Finnish)
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South Asian
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Other
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VQSLOD
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MQ
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BaseQRankSum
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ClippingRankSum
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MQRankSum
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QD
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FS
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ReadPosRankSum
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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Other
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African
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East Asian
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European (Finnish)
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Latino
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DP
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MQ
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FS
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQRankSum
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QD
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ReadPosRankSum
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 41
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variant carriers: 0

GenotypeQuality
all individuals: 1402
bin: 8.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.510528382828313e-5
allele num: 66202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 878
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14486
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11558
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.564e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.0e-4

MQ
type: SiteQuality
SIO_000300: 5.928e1

VQSLOD
type: SiteQuality
SIO_000300: 1.31e0

FS
type: SiteQuality
SIO_000300: 7.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.36e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.64e-1

DP
type: SiteQuality
SIO_000300: 3.805208e6

GenotypeDepth
all individuals: 1343
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 906
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variant carriers: 0

GenotypeDepth
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bin: 9.25e1
variant carriers: 1

GenotypeDepth
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variant carriers: 2

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1400
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variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66088
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14094
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.462004500605851e-4
allele num: 11554
num of homozygotes: 0

African
type: Population
allele count: 7
allele frequency: 6.765899864682003e-4
allele num: 10346
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 872
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

FS
type: SiteQuality
SIO_000300: 8.72e-1

QD
type: SiteQuality
SIO_000300: 1.765e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.1e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 5.679999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.645e1

MQRankSum
type: SiteQuality
SIO_000300: -1.899e0

DP
type: SiteQuality
SIO_000300: 3.796698e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.71e-1

GenotypeDepth
all individuals: 2024
bin: 8.75e1
variant carriers: 976

GenotypeDepth
all individuals: 4720
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variant carriers: 1170

GenotypeDepth
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bin: 7.5e0
variant carriers: 174

GenotypeDepth
all individuals: 1969
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variant carriers: 174

GenotypeDepth
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variant carriers: 779

GenotypeDepth
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bin: 2.75e1
variant carriers: 135

GenotypeDepth
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variant carriers: 1172

GenotypeQuality
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variant carriers: 40

GenotypeQuality
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variant carriers: 16

GenotypeQuality
all individuals: 504
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variant carriers: 11

GenotypeQuality
all individuals: 1592
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variant carriers: 38

GenotypeQuality
all individuals: 164
bin: 1.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1281
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variant carriers: 28

GenotypeQuality
all individuals: 48530
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variant carriers: 14628

GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 30

GenotypeQuality
all individuals: 112
bin: 2.5e0
variant carriers: 2

GenotypeQuality
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variant carriers: 18

GenotypeQuality
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variant carriers: 19

GenotypeQuality
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bin: 3.25e1
variant carriers: 28

GenotypeQuality
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bin: 7.75e1
variant carriers: 27

GenotypeQuality
all individuals: 261
bin: 3.75e1
variant carriers: 31

GenotypeQuality
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variant carriers: 10

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 28

GenotypeQuality
all individuals: 1531
bin: 6.25e1
variant carriers: 23

Other
type: Population
allele count: 117
allele frequency: 1.344827586206896e-1
allele num: 870
num of homozygotes: 12

European (Finnish)
type: Population
allele count: 403
allele frequency: 6.094978826376286e-2
allele num: 6612
num of homozygotes: 13

East Asian
type: Population
allele count: 848
allele frequency: 9.817087288724241e-2
allele num: 8638
num of homozygotes: 43

African
type: Population
allele count: 3003
allele frequency: 2.90650406504065e-1
allele num: 10332
num of homozygotes: 443

Latino
type: Population
allele count: 1088
allele frequency: 9.429710521754203e-2
allele num: 11538
num of homozygotes: 54

European (Non-Finnish)
type: Population
allele count: 9608
allele frequency: 1.457391620908291e-1
allele num: 65926
num of homozygotes: 764

South Asian
type: Population
allele count: 1149
allele frequency: 8.436123348017621e-2
allele num: 13620
num of homozygotes: 54

VQSLOD
type: SiteQuality
SIO_000300: 4.79e0

MQRankSum
type: SiteQuality
SIO_000300: 8.2e-2

QD
type: SiteQuality
SIO_000300: 1.72e1

FS
type: SiteQuality
SIO_000300: 8.46e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.06e-1

MQ
type: SiteQuality
SIO_000300: 5.971e1

DP
type: SiteQuality
SIO_000300: 3.772131e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.305e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.57e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.98e-2

GenotypeDepth
all individuals: 4368
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 6075
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variant carriers: 1

GenotypeDepth
all individuals: 2468
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
all individuals: 5500
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 50
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GenotypeQuality
all individuals: 2607
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1906
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variant carriers: 0

GenotypeQuality
all individuals: 248
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variant carriers: 0

GenotypeQuality
all individuals: 40
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 671
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 44733
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GenotypeQuality
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GenotypeQuality
all individuals: 805
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 111
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GenotypeQuality
all individuals: 1492
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GenotypeQuality
all individuals: 120
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10256
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13142
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 2.602811035918792e-4
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.571358912626093e-5
allele num: 65626
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.474835e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
type: SiteQuality
SIO_000300: 3.29e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.66e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.65e-1

QD
type: SiteQuality
SIO_000300: 1.324e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.01e-1

GenotypeDepth
all individuals: 2231
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 696
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeQuality
all individuals: 819
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variant carriers: 0

GenotypeQuality
all individuals: 44721
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1470
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11520
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65420
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.918910357934748e-5
allele num: 12628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-1

QD
type: SiteQuality
SIO_000300: 1.221e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.12e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.19e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.247e0

MQRankSum
type: SiteQuality
SIO_000300: -5.32e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 5.919e1

DP
type: SiteQuality
SIO_000300: 3.468787e6

GenotypeDepth
all individuals: 3612
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4357
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variant carriers: 0

GenotypeDepth
all individuals: 2239
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GenotypeDepth
all individuals: 6133
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GenotypeDepth
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GenotypeDepth
all individuals: 1374
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GenotypeDepth
all individuals: 1283
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GenotypeQuality
all individuals: 559
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GenotypeQuality
all individuals: 1465
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1047
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 2110
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12476
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.316423442205235e-4
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65362
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10196
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 7.56e-1

FS
type: SiteQuality
SIO_000300: 1.97e0

MQRankSum
type: SiteQuality
SIO_000300: 1.2e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.04e-1

DP
type: SiteQuality
SIO_000300: 3.466878e6

BaseQRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

MQ
type: SiteQuality
SIO_000300: 5.933e1

QD
type: SiteQuality
SIO_000300: 1.541e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.599999999999999e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.6e-3

GenotypeDepth
all individuals: 1122
bin: 9.75e1
variant carriers: 7

GenotypeDepth
all individuals: 262
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variant carriers: 2

GenotypeDepth
all individuals: 561
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GenotypeDepth
all individuals: 400
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variant carriers: 1

GenotypeDepth
all individuals: 1956
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variant carriers: 11

GenotypeDepth
all individuals: 20907
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variant carriers: 9

GenotypeDepth
all individuals: 211
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GenotypeQuality
all individuals: 1176
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GenotypeQuality
all individuals: 11535
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variant carriers: 108

GenotypeQuality
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GenotypeQuality
all individuals: 7907
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GenotypeQuality
all individuals: 391
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GenotypeQuality
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GenotypeQuality
all individuals: 2586
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GenotypeQuality
all individuals: 2250
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GenotypeQuality
all individuals: 3090
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1093
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variant carriers: 0

GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 401
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variant carriers: 0

African
type: Population
allele count: 94
allele frequency: 9.054132151801194e-3
allele num: 10382
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 6
allele frequency: 9.028258448945198e-5
allele num: 66458
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele count: 5
allele frequency: 4.334257975034674e-4
allele num: 11536
num of homozygotes: 0

South Asian
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allele frequency: 6.199628022318661e-5
allele num: 16130
num of homozygotes: 0

BaseQRankSum
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ClippingRankSum
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InbreedingCoeff
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DP
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MQ
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MQRankSum
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VQSLOD
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ReadPosRankSum
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SIO_000300: 1.94e-1

QD
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FS
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.665511265164645e-5
allele num: 11540
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 3
allele frequency: 4.512363877023043e-5
allele num: 66484
num of homozygotes: 0

Other
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ClippingRankSum
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SIO_000300: 1.55e-1

MQRankSum
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ReadPosRankSum
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MQ
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VQSLOD
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BaseQRankSum
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QD
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FS
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SIO_000300: 2.925e0

DP
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InbreedingCoeff
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SIO_000300: 9.299999999999999e-3

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504121292341014e-5
allele num: 66484
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.175126590095097e-5
allele num: 16194
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.55e-1

ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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VQSLOD
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QD
type: SiteQuality
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FS
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SIO_000300: 2.925e0

MQ
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SIO_000300: 5.973e1

BaseQRankSum
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SIO_000300: 4.01e0

MQRankSum
type: SiteQuality
SIO_000300: 1.68e-1

DP
type: SiteQuality
SIO_000300: 1.994102e6

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502584445245823e-5
allele num: 66552
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8622
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -3.73e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.22e-1

BaseQRankSum
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SIO_000300: 2.02e0

VQSLOD
type: SiteQuality
SIO_000300: 9.26e-1

InbreedingCoeff
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SIO_000300: 1.44e-2

DP
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SIO_000300: 1.994984e6

ClippingRankSum
type: SiteQuality
SIO_000300: -5.600000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
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SIO_000300: 1.446e1

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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allele num: 16228
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East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 5
allele frequency: 7.514277126540426e-5
allele num: 66540
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Other
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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ReadPosRankSum
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QD
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VQSLOD
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FS
type: SiteQuality
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InbreedingCoeff
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SIO_000300: 1.38e-2

DP
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GenotypeDepth
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variant carriers: 8

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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allele frequency: 1.298476454293629e-3
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Other
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European (Finnish)
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East Asian
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European (Non-Finnish)
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allele num: 66566
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DP
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ReadPosRankSum
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FS
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BaseQRankSum
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QD
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MQRankSum
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MQ
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 6
allele frequency: 3.670173721556154e-4
allele num: 16348
num of homozygotes: 0

Latino
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allele count: 0
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East Asian
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allele frequency: 8.341056533827619e-3
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African
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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Other
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VQSLOD
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ClippingRankSum
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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SIO_000300: 2.8e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e0

MQ
type: SiteQuality
SIO_000300: 6.0e1

DP
type: SiteQuality
SIO_000300: 2.017311e6

QD
type: SiteQuality
SIO_000300: 1.488e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16426
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.617234083477592e-5
allele num: 10398
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.026258e6

BaseQRankSum
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SIO_000300: -1.032e0

FS
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MQ
type: SiteQuality
SIO_000300: 5.98e1

InbreedingCoeff
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ClippingRankSum
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MQRankSum
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SIO_000300: -2.5e-1

ReadPosRankSum
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QD
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SIO_000300: 1.192e1

VQSLOD
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SIO_000300: 7.37e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 1
allele frequency: 1.156871818602499e-4
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.27e0

MQRankSum
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SIO_000300: 2.54e-1

VQSLOD
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SIO_000300: 2.41e0

InbreedingCoeff
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SIO_000300: 1.38e-2

MQ
type: SiteQuality
SIO_000300: 5.967e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

FS
type: SiteQuality
SIO_000300: 3.351e0

DP
type: SiteQuality
SIO_000300: 2.027679e6

QD
type: SiteQuality
SIO_000300: 1.556e1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16442
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500510173458976e-5
allele num: 66644
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

MQ
type: SiteQuality
SIO_000300: 5.967e1

VQSLOD
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SIO_000300: 2.41e0

FS
type: SiteQuality
SIO_000300: 3.351e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.55e-1

InbreedingCoeff
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SIO_000300: 1.38e-2

BaseQRankSum
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SIO_000300: 3.27e0

DP
type: SiteQuality
SIO_000300: 2.027679e6

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e-1

QD
type: SiteQuality
SIO_000300: 1.556e1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 1

GenotypeDepth
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GenotypeDepth
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variant carriers: 1

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
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allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66670
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.644536652835408e-5
allele num: 11568
num of homozygotes: 0

African
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allele count: 8
allele frequency: 7.692307692307692e-4
allele num: 10400
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
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QD
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MQ
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DP
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MQRankSum
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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FS
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SIO_000300: 1.659e0

ReadPosRankSum
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SIO_000300: 6.72e-1

BaseQRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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African
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South Asian
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East Asian
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Latino
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European (Finnish)
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VQSLOD
type: SiteQuality
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FS
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BaseQRankSum
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MQRankSum
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InbreedingCoeff
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ClippingRankSum
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QD
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ReadPosRankSum
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DP
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MQ
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
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num of homozygotes: 0

African
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East Asian
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allele num: 8650
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South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
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MQ
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FS
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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MQRankSum
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DP
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Non-Finnish)
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European (Finnish)
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South Asian
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VQSLOD
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DP
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InbreedingCoeff
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BaseQRankSum
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MQ
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MQRankSum
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ClippingRankSum
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FS
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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European (Non-Finnish)
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South Asian
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African
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European (Finnish)
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Other
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InbreedingCoeff
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MQRankSum
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MQ
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BaseQRankSum
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FS
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ReadPosRankSum
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ClippingRankSum
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DP
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VQSLOD
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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Other
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European (Finnish)
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South Asian
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Latino
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European (Non-Finnish)
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FS
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VQSLOD
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QD
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InbreedingCoeff
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MQRankSum
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DP
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MQ
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BaseQRankSum
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ClippingRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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Other
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East Asian
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European (Non-Finnish)
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Latino
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African
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InbreedingCoeff
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MQRankSum
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VQSLOD
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DP
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MQ
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BaseQRankSum
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FS
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ClippingRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Non-Finnish)
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East Asian
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Latino
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ClippingRankSum
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VQSLOD
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DP
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InbreedingCoeff
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QD
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FS
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MQ
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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East Asian
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African
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European (Non-Finnish)
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MQRankSum
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InbreedingCoeff
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FS
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ClippingRankSum
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VQSLOD
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DP
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ReadPosRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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Latino
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East Asian
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DP
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QD
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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MQ
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MQRankSum
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BaseQRankSum
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ReadPosRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Non-Finnish)
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African
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East Asian
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Other
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Latino
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MQ
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InbreedingCoeff
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QD
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VQSLOD
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MQRankSum
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FS
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ClippingRankSum
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DP
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ReadPosRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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Other
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European (Finnish)
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Latino
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South Asian
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East Asian
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MQRankSum
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ReadPosRankSum
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QD
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FS
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BaseQRankSum
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MQ
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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DP
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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African
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South Asian
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East Asian
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Latino
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European (Non-Finnish)
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VQSLOD
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ReadPosRankSum
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FS
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DP
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InbreedingCoeff
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BaseQRankSum
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MQRankSum
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MQ
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ClippingRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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South Asian
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African
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European (Finnish)
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Other
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East Asian
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European (Non-Finnish)
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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FS
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ClippingRankSum
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DP
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BaseQRankSum
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VQSLOD
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MQ
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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African
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European (Finnish)
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FS
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VQSLOD
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ReadPosRankSum
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DP
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BaseQRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 5.993407252022775e-5
allele num: 66740
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Other
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Latino
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South Asian
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BaseQRankSum
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ReadPosRankSum
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QD
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FS
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MQRankSum
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MQ
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ClippingRankSum
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VQSLOD
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DP
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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Other
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East Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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African
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Latino
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South Asian
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BaseQRankSum
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MQRankSum
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VQSLOD
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DP
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ClippingRankSum
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ReadPosRankSum
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FS
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InbreedingCoeff
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QD
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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South Asian
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European (Finnish)
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European (Non-Finnish)
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Latino
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FS
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DP
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MQRankSum
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MQ
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InbreedingCoeff
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VQSLOD
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ReadPosRankSum
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QD
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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Latino
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African
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South Asian
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Other
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European (Non-Finnish)
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VQSLOD
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ClippingRankSum
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InbreedingCoeff
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ReadPosRankSum
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MQ
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FS
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QD
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DP
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MQRankSum
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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East Asian
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European (Finnish)
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Latino
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African
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Other
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South Asian
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QD
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FS
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DP
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ClippingRankSum
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MQ
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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BaseQRankSum
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MQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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East Asian
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African
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European (Finnish)
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MQ
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InbreedingCoeff
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MQRankSum
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BaseQRankSum
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QD
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DP
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VQSLOD
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ReadPosRankSum
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FS
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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African
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East Asian
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Latino
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South Asian
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European (Finnish)
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Other
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DP
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MQ
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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FS
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VQSLOD
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BaseQRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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Other
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South Asian
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African
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Latino
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European (Non-Finnish)
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MQ
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VQSLOD
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DP
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ReadPosRankSum
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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South Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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VQSLOD
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BaseQRankSum
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DP
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FS
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ReadPosRankSum
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QD
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MQRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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Latino
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East Asian
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European (Non-Finnish)
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African
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Other
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VQSLOD
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InbreedingCoeff
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DP
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ClippingRankSum
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FS
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MQ
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ReadPosRankSum
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MQRankSum
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BaseQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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South Asian
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Latino
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African
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European (Finnish)
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East Asian
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Other
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QD
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InbreedingCoeff
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ReadPosRankSum
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DP
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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VQSLOD
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FS
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MQ
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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European (Finnish)
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European (Non-Finnish)
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Other
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South Asian
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FS
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ReadPosRankSum
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MQ
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MQRankSum
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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DP
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InbreedingCoeff
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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num of homozygotes: 0

African
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Other
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South Asian
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European (Finnish)
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele frequency: 8.990110878034162e-5
allele num: 66740
num of homozygotes: 0

Latino
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ReadPosRankSum
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QD
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DP
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FS
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VQSLOD
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MQ
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ClippingRankSum
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MQRankSum
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BaseQRankSum
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InbreedingCoeff
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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num of homozygotes: 0

Latino
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allele frequency: 1.727414061150458e-4
allele num: 11578
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Other
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African
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allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
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European (Finnish)
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East Asian
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QD
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BaseQRankSum
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DP
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InbreedingCoeff
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MQRankSum
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ClippingRankSum
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VQSLOD
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FS
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MQ
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ReadPosRankSum
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SIO_000300: 1.24e0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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Latino
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num of homozygotes: 0

European (Finnish)
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East Asian
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European (Non-Finnish)
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Other
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VQSLOD
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DP
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InbreedingCoeff
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FS
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MQRankSum
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ReadPosRankSum
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BaseQRankSum
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MQ
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SIO_000300: 5.986e1

ClippingRankSum
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QD
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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num of homozygotes: 0

South Asian
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East Asian
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European (Non-Finnish)
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allele num: 66736
num of homozygotes: 0

Latino
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African
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Other
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InbreedingCoeff
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VQSLOD
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FS
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MQRankSum
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ReadPosRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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QD
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DP
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GenotypeDepth
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variant carriers: 0

GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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South Asian
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East Asian
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Other
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Latino
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European (Finnish)
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European (Non-Finnish)
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ReadPosRankSum
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VQSLOD
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
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InbreedingCoeff
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DP
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FS
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 78
allele frequency: 7.495675571785508e-3
allele num: 10406
num of homozygotes: 0

Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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European (Finnish)
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South Asian
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East Asian
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MQRankSum
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VQSLOD
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ReadPosRankSum
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InbreedingCoeff
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QD
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DP
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MQ
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FS
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BaseQRankSum
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ClippingRankSum
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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East Asian
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DP
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MQRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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FS
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MQ
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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European (Finnish)
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East Asian
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Other
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European (Non-Finnish)
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South Asian
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VQSLOD
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MQ
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FS
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InbreedingCoeff
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ReadPosRankSum
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ClippingRankSum
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DP
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BaseQRankSum
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MQRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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Other
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Latino
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East Asian
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South Asian
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African
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European (Finnish)
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MQ
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BaseQRankSum
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VQSLOD
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DP
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ClippingRankSum
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FS
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InbreedingCoeff
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MQRankSum
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ReadPosRankSum
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QD
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeDepth
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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South Asian
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European (Finnish)
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East Asian
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Other
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African
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Latino
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ReadPosRankSum
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MQ
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ClippingRankSum
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DP
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VQSLOD
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MQRankSum
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InbreedingCoeff
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FS
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QD
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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African
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Latino
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East Asian
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European (Finnish)
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Other
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European (Non-Finnish)
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South Asian
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MQRankSum
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DP
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InbreedingCoeff
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VQSLOD
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QD
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ReadPosRankSum
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MQ
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FS
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GenotypeDepth
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bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 249
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 795
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 302
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 402
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1935
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1128
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30128
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11447
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 6
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2254
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8396
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498621268433042e-5
allele num: 66728
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.611687812379854e-5
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 6.0e1

VQSLOD
type: SiteQuality
SIO_000300: 1.53e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 1.017e1

FS
type: SiteQuality
SIO_000300: 4.619e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.81e-1

DP
type: SiteQuality
SIO_000300: 2.035135e6

MQRankSum
type: SiteQuality
SIO_000300: -4.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.86e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.09e-1

GenotypeDepth
all individuals: 11185
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1128
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 216
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 22635
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11764
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4752
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 404
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1292
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 572
bin: 6.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1934
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 248
bin: 8.25e1
variant carriers: 0

GenotypeDepth
all individuals: 276
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2622
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11446
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1618
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8396
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30132
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498576352465158e-5
allele num: 66730
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11562
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 6.67e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -7.393e-1

DP
type: SiteQuality
SIO_000300: 2.035226e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.129e0

MQ
type: SiteQuality
SIO_000300: 5.877e1

MQRankSum
type: SiteQuality
SIO_000300: 2.6e-2

FS
type: SiteQuality
SIO_000300: 1.732e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.05e-1

GenotypeDepth
all individuals: 796
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 575
bin: 6.25e1
variant carriers: 2

GenotypeDepth
all individuals: 1290
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 25
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 11761
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 402
bin: 6.75e1
variant carriers: 0

GenotypeDepth
all individuals: 4747
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1935
bin: 4.75e1
variant carriers: 1

GenotypeDepth
all individuals: 25
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 216
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 249
bin: 8.25e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 224
bin: 8.75e1
variant carriers: 0

GenotypeDepth
all individuals: 22632
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 304
bin: 7.25e1
variant carriers: 1

GenotypeDepth
all individuals: 277
bin: 7.75e1
variant carriers: 1

GenotypeDepth
all individuals: 1130
bin: 9.75e1
variant carriers: 2

GenotypeDepth
all individuals: 11172
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 2930
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2623
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3049
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2253
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30120
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 10
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1124
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11453
bin: 9.75e1
variant carriers: 8

GenotypeQuality
all individuals: 8390
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 1.198861081972126e-4
allele num: 66730
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10404
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.67e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.17e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.81e-1

QD
type: SiteQuality
SIO_000300: 1.414e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.436e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

MQ
type: SiteQuality
SIO_000300: 5.979e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.035292e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.72e-1

Annotation
canonical: false
consequence: missense_variant
ensembl gene: ENSG00000124678
ensembl protein: ENSP00000425995
ensembl transcript: ENST00000512012
gene symbol: TCP11
hgvsc: ENST00000512012.1:c.383G>T
hgvsp: ENSP00000425995.1:p.Arg128Leu
variant of: http://identifiers.org/hgnc/11658

GenotypeDepth
all individuals: 250
bin: 8.25e1
variant carriers: 2

GenotypeDepth
all individuals: 11759
bin: 3.25e1
variant carriers: 0

GenotypeDepth
all individuals: 225
bin: 8.75e1
variant carriers: 1

GenotypeDepth
all individuals: 29
bin: 1.25e1
variant carriers: 0

GenotypeDepth
all individuals: 799
bin: 5.75e1
variant carriers: 1

GenotypeDepth
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeDepth
all individuals: 303
bin: 7.25e1
variant carriers: 0

GenotypeDepth
all individuals: 29
bin: 1.75e1
variant carriers: 0

GenotypeDepth
all individuals: 275
bin: 7.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2931
bin: 4.25e1
variant carriers: 0

GenotypeDepth
all individuals: 11156
bin: 2.25e1
variant carriers: 0

GenotypeDepth
all individuals: 23
bin: 7.5e0
variant carriers: 0

GenotypeDepth
all individuals: 22631
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1291
bin: 5.25e1
variant carriers: 0

GenotypeDepth
all individuals: 1129
bin: 9.75e1
variant carriers: 0

GenotypeDepth
all individuals: 577
bin: 6.25e1
variant carriers: 3

GenotypeDepth
all individuals: 216
bin: 9.25e1
variant carriers: 0

GenotypeDepth
all individuals: 4746
bin: 3.75e1
variant carriers: 0

GenotypeDepth
all individuals: 1932
bin: 4.75e1
variant carriers: 0

GenotypeDepth
all individuals: 405
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11453
bin: 9.75e1
variant carriers: 7

GenotypeQuality
all individuals: 4
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1617
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3048
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1125
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2247
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2623
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30095
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8389
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10400
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 6
allele frequency: 5.190311418685121e-4
allele num: 11560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6612
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.498756032493031e-5
allele num: 66722
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.293e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.09e0

FS
type: SiteQuality
SIO_000300: 2.186e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.18e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.0e-2

MQ
type: SiteQuality
SIO_000300: 5.989e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 2.035324e6

VQSLOD
type: SiteQuality
SIO_000300: 1.76e0