7-102236538-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236538
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236538
    reference: chr 7
allele count: 1
allele frequency: 3.717472118959108e-4
allele num: 2690
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.776G>A
  hgvsp: ENSP00000262940.7:p.Arg259Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.317G>A
  hgvsp: ENSP00000430337.1:p.Gly107Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.776G>A
  hgvsp: ENSP00000412876.2:p.Arg259Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.560G>A
  hgvsp: ENSP00000420352.1:p.Arg187Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.560G>A
  hgvsp: ENSP00000417395.1:p.Arg187Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.761G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.719G>A
  hgvsp: ENSP00000430418.1:p.Arg240Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*666G>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 30623
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9677
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1063
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1818
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 975
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28807
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Arg259Gln
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: VQSLOD

7-102236544-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236544
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236544
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 3248
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.770G>A
  hgvsp: ENSP00000412876.2:p.Arg257Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.755G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.713G>A
  hgvsp: ENSP00000430418.1:p.Arg238Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.770G>A
  hgvsp: ENSP00000262940.7:p.Arg257Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*660G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.311G>A
  hgvsp: ENSP00000430337.1:p.Gly105Ser
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.554G>A
  hgvsp: ENSP00000420352.1:p.Arg185Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.554G>A
  hgvsp: ENSP00000417395.1:p.Arg185Gln
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12553
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29912
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1231
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28432
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 391
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Arg257Gln
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
reference allele: C
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQRankSum

7-102236545-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236545
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236545
    reference: chr 7
allele count: 2
allele frequency: 6.020469596628537e-4
allele num: 3322
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.754C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*659C>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.310C>T
  hgvsp: ENST00000519539.1:c.310C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.553C>T
  hgvsp: ENSP00000420352.1:p.Arg185Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.769C>T
  hgvsp: ENSP00000262940.7:p.Arg257Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.553C>T
  hgvsp: ENSP00000417395.1:p.Arg185Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.769C>T
  hgvsp: ENSP00000412876.2:p.Arg257Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.712C>T
  hgvsp: ENSP00000430418.1:p.Arg238Trp
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13082
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1308
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29654
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 28057
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1682
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Arg257Trp
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: African
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: VQSLOD

7-102236554-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236554
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236554
    reference: chr 7
allele count: 1
allele frequency: 2.187226596675416e-4
allele num: 4572
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.301C>T
  hgvsp: ENST00000519539.1:c.301C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.544C>T
  hgvsp: ENST00000462172.1:c.544C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.544C>T
  hgvsp: ENST00000461209.1:c.544C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.760C>T
  hgvsp: ENST00000262940.7:c.760C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.760C>T
  hgvsp: ENST00000449970.2:c.760C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.745C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.703C>T
  hgvsp: ENST00000522801.1:c.703C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*650C>T
canonical: false
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 590
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15952
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1516
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 605
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1164
  bin: 1.25e1
  variant carriers: 0
hgvs: c.301C>T
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: Other
reference allele: G
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQ
site quality: ClippingRankSum

7-102236557-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236557
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236557
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 4978
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.541C>G
  hgvsp: ENSP00000420352.1:p.Gln181Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*647C>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.757C>G
  hgvsp: ENSP00000262940.7:p.Gln253Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.541C>G
  hgvsp: ENSP00000417395.1:p.Gln181Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.757C>G
  hgvsp: ENSP00000412876.2:p.Gln253Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.700C>G
  hgvsp: ENSP00000430418.1:p.Gln234Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.742C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.301-3C>G
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16685
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27622
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1605
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1459
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 55
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gln253Glu
num of homozygotes: 0
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

7-102236565-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236565
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236565
    reference: chr 7
allele count: 21
allele frequency: 3.406878650227125e-3
allele num: 6164
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.533G>A
  hgvsp: ENSP00000420352.1:p.Gly178Asp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.533G>A
  hgvsp: ENSP00000417395.1:p.Gly178Asp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.734G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.749G>A
  hgvsp: ENSP00000412876.2:p.Gly250Asp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.749G>A
  hgvsp: ENSP00000262940.7:p.Gly250Asp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.692G>A
  hgvsp: ENSP00000430418.1:p.Gly231Asp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.301-11G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*639G>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 26349
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18301
  bin: 7.5e0
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 1.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 956
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 14871
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 292
  bin: 3.75e1
  variant carriers: 2
hgvs: p.Gly250Asp
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

7-102236574-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236574
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236574
    reference: chr 7
allele count: 2
allele frequency: 1.233806292412091e-4
allele num: 16210
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.740G>A
  hgvsp: ENSP00000262940.7:p.Gly247Asp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.725G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.524G>A
  hgvsp: ENSP00000420352.1:p.Gly175Asp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.524G>A
  hgvsp: ENSP00000417395.1:p.Gly175Asp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.740G>A
  hgvsp: ENSP00000412876.2:p.Gly247Asp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.683G>A
  hgvsp: ENSP00000430418.1:p.Gly228Asp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*630G>A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.301-20G>A
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2473
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5105
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25787
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16881
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24528
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Gly247Asp
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

7-102236578-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236578
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236578
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 21682
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.301-24A>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.522-2A>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.738-2A>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.681-2A>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.522-2A>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.723-2A>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: splice_acceptor_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*628-2A>C
annotation: Annotation
  canonical: false
  consequence: splice_acceptor_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.738-2A>C
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: splice acceptor
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13951
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2335
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26591
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7656
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 359
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 395
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25363
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1333
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 351
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 929
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 39
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 9.75e1
  variant carriers: 0
hgvs: c.738-2A>C
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: MQ

7-102236594-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236594
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236594
    reference: chr 7
allele count: 12
allele frequency: 2.697841726618705e-4
allele num: 44480
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.522-18A>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.738-18A>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.681-18A>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.301-40A>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.522-18A>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.738-18A>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.723-18A>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*628-18A>T
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 17921
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 500
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23373
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 7321
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 508
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 792
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1930
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7051
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 930
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 451
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 22543
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD

7-102236607-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236607
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236607
    reference: chr 7
allele count: 8
allele frequency: 1.505343971097396e-4
allele num: 53144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.738-31T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.681-31T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.522-31T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.522-31T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*628-31T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.723-31T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.738-31T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.301-53T>A
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20801
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5886
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2113
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21042
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 645
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2044
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 972
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20037
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 680
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 335
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5565
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 914
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 3
population: Other
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

7-102236614-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236614
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236614
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 56038
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.522-38G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.522-38G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.738-38G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*628-38G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.738-38G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.723-38G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.681-38G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.301-60G>A
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 5449
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2380
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21425
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1263
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20176
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18978
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 179
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 496
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 976
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 675
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 819
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 327
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum

7-102236615-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236615
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236615
    reference: chr 7
allele count: 3
allele frequency: 5.311990934202139e-5
allele num: 56476
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.738-39T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.522-39T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*628-39T>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.522-39T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.681-39T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.301-61T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.723-39T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.738-39T>A
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21469
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19943
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2302
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2454
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5012
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 650
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 422
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 824
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: A
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-102236625-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102236625
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102236625
    reference: chr 7
allele count: 4
allele frequency: 6.566850538481745e-5
allele num: 60912
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.301-71C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.522-49C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.522-49C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.738-49C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.738-49C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.681-49C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.723-49C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*628-49C>T
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4829
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18529
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2680
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2987
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1402
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1100
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1218
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 361
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 997
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: Latino
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

7-102240301-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102240301
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102240301
    reference: chr 7
allele count: 4
allele frequency: 2.857142857142857e-1
allele num: 14
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.722+6T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.521+6T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*627+6T>A
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.680+6T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.300+6T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.737+6T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.737+6T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.521+6T>A
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 7.5e0
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1519
  bin: 2.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1214
  bin: 7.5e0
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 5.25e1
  variant carriers: 2
hgvs: c.*627+6T>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum

7-102240308-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102240308
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102240308
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 16
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.520G>A
  hgvsp: ENSP00000417395.1:p.Glu174Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.721G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.736G>A
  hgvsp: ENSP00000412876.2:p.Glu246Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.628G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.679G>A
  hgvsp: ENSP00000430418.1:p.Glu227Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*626G>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.736G>A
  hgvsp: ENSP00000262940.7:p.Glu246Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.299G>A
  hgvsp: ENSP00000430337.1:p.Asp101Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.520G>A
  hgvsp: ENSP00000420352.1:p.Glu174Lys
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1817
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Glu246Lys
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQ
site quality: FS
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

7-102240347-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102240347
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102240347
    reference: chr 7
allele count: 1
allele frequency: 5.0e-2
allele num: 20
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.697C>T
  hgvsp: ENSP00000262940.7:p.Arg233Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.481C>T
  hgvsp: ENSP00000417395.1:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.589C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*587C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.697C>T
  hgvsp: ENSP00000412876.2:p.Arg233Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.640C>T
  hgvsp: ENSP00000430418.1:p.Arg214Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.481C>T
  hgvsp: ENSP00000420352.1:p.Arg161Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.260C>T
  hgvsp: ENSP00000430337.1:p.Arg88Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.682C>T
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2275
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 194
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg233Trp
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

7-102240376-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102240376
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102240376
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 16
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430337
  ensembl transcript: ENST00000519539
  gene symbol: RASA4
  hgvsc: ENST00000519539.1:c.231G>A
  hgvsp: ENSP00000430337.1:p.Arg78Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.668G>A
  hgvsp: ENSP00000412876.2:p.Arg223Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.668G>A
  hgvsp: ENSP00000262940.7:p.Arg223Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.452G>A
  hgvsp: ENSP00000417395.1:p.Arg151Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.452G>A
  hgvsp: ENSP00000420352.1:p.Arg151Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*558G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.560G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.653G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.611G>A
  hgvsp: ENSP00000430418.1:p.Arg204Gln
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2036
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 0
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1918
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg223Gln
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

7-102246271-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246271
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246271
    reference: chr 7
allele count: 3
allele frequency: 2.254960914010824e-4
allele num: 13304
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*318+34T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.320+34T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.428+34T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.371+34T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.495+34T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.212+34T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.428+34T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.212+34T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2937T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.212+34T>C
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 278
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 773
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31718
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9612
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1499
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25597
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: ReadPosRankSum

7-102246277-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246277
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246277
    reference: chr 7
allele count: 24
allele frequency: 1.748761294083358e-3
allele num: 13724
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2931A>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*318+28A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.428+28A>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.212+28A>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.320+28A>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.495+28A>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.371+28A>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.212+28A>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.212+28A>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.428+28A>G
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 9.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 814
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30860
  bin: 2.5e0
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 963
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 1.25e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 11299
  bin: 7.5e0
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 124
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 398
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 4.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 567
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9044
  bin: 2.25e1
  variant carriers: 2
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff

7-102246281-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246281
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246281
    reference: chr 7
allele count: 13
allele frequency: 9.219858156028368e-4
allele num: 14100
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.371+24G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.428+24G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2927G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.212+24G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*318+24G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.428+24G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.212+24G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.212+24G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.320+24G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.495+24G>A
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 399
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1021
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12547
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 29937
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1747
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1296
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 49
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 377
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2034
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 512
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

7-102246294-CT-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246294
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246293
    reference: chr 7
allele count: 8
allele frequency: 4.927929037821855e-4
allele num: 16234
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.371+10delA
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.428+10delA
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.212+10delA
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.212+10delA
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.212+10delA
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.495+10delA
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.428+10delA
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2913delA
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.320+10delA
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*318+10delA
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 906
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 567
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26607
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17153
  bin: 7.5e0
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 2235
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 404
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 99
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1652
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1634
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 649
  bin: 3.25e1
  variant carriers: 1
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: CT
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: DP

7-102246311-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246311
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246311
    reference: chr 7
allele count: 5270
allele frequency: 2.554037026267326e-1
allele num: 20634
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2897A>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.314A>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.422A>G
  hgvsp: ENSP00000262940.7:p.Glu141Gly
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.206A>G
  hgvsp: ENSP00000428732.1:p.Glu69Gly
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.206A>G
  hgvsp: ENSP00000417395.1:p.Glu69Gly
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.422A>G
  hgvsp: ENSP00000412876.2:p.Glu141Gly
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.365A>G
  hgvsp: ENSP00000430418.1:p.Glu122Gly
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*312A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.489A>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.206A>G
  hgvsp: ENSP00000420352.1:p.Glu69Gly
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 8.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 6.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 2126
  bin: 1.75e1
  variant carriers: 1122
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 4.25e1
  variant carriers: 97
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 2.25e1
  variant carriers: 546
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 3.75e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 5759
  bin: 1.25e1
  variant carriers: 2048
genotype depth: GenotypeDepth
  all individuals: 18305
  bin: 2.5e0
  variant carriers: 303
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.75e1
  variant carriers: 93
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 5.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 7.75e1
  variant carriers: 52
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 8.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 18826
  bin: 7.5e0
  variant carriers: 2011
genotype depth: GenotypeDepth
  all individuals: 564
  bin: 9.75e1
  variant carriers: 467
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 3.25e1
  variant carriers: 169
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 5.25e1
  variant carriers: 89
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 7.25e1
  variant carriers: 55
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 2.75e1
  variant carriers: 267
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 8.25e1
  variant carriers: 266
genotype quality: GenotypeQuality
  all individuals: 14432
  bin: 2.5e0
  variant carriers: 75
hgvs: p.Glu141Gly
num of homozygotes: 27
population: Latino
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

7-102246319-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246319
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246319
    reference: chr 7
allele count: 1
allele frequency: 3.398586188145731e-5
allele num: 29424
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*304T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.414T>C
  hgvsp: ENST00000449970.2:c.414T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.357T>C
  hgvsp: ENST00000522801.1:c.357T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.198T>C
  hgvsp: ENST00000462172.1:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2889T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.306T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.198T>C
  hgvsp: ENST00000461209.1:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.198T>C
  hgvsp: ENST00000520042.1:c.198T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.414T>C
  hgvsp: ENST00000262940.7:c.414T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.481T>C
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1774
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 744
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5591
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19362
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19920
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1218
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2065
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 550
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 433
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18183
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser138Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: ClippingRankSum

7-102246327-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246327
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246327
    reference: chr 7
allele count: 3
allele frequency: 9.532888465204957e-5
allele num: 31470
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.190C>T
  hgvsp: ENSP00000417395.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.406C>T
  hgvsp: ENSP00000262940.7:p.Arg136Cys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*296C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.190C>T
  hgvsp: ENSP00000428732.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.298C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2881C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.473C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.349C>T
  hgvsp: ENSP00000430418.1:p.Arg117Cys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.190C>T
  hgvsp: ENSP00000420352.1:p.Arg64Cys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.406C>T
  hgvsp: ENSP00000412876.2:p.Arg136Cys
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1399
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3572
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21615
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5662
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1103
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 318
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 525
  bin: 7.75e1
  variant carriers: 1
hgvs: p.Arg136Cys
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-102246332-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246332
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246332
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 33054
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.293G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.401G>A
  hgvsp: ENSP00000262940.7:p.Arg134Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.344G>A
  hgvsp: ENSP00000430418.1:p.Arg115Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.468G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.185G>A
  hgvsp: ENSP00000420352.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2876G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*291G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.185G>A
  hgvsp: ENSP00000417395.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.401G>A
  hgvsp: ENSP00000412876.2:p.Arg134Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.185G>A
  hgvsp: ENSP00000428732.1:p.Arg62Gln
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5565
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 973
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22437
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1127
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 758
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1537
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4503
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1444
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Arg134Gln
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Other
population: South Asian
population: European (Finnish)
population: Latino
population: African
reference allele: C
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-102246333-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246333
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246333
    reference: chr 7
allele count: 2
allele frequency: 5.926628341136728e-5
allele num: 33746
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*290C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.184C>T
  hgvsp: ENSP00000417395.1:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.184C>T
  hgvsp: ENSP00000428732.1:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.400C>T
  hgvsp: ENSP00000262940.7:p.Arg134Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.184C>T
  hgvsp: ENSP00000420352.1:p.Arg62Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.343C>T
  hgvsp: ENSP00000430418.1:p.Arg115Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.400C>T
  hgvsp: ENSP00000412876.2:p.Arg134Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.467C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.292C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2875C>T
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22624
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 962
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5516
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15376
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1586
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1154
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4774
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 757
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 543
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg134Trp
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: FS
site quality: DP
site quality: BaseQRankSum

7-102246335-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246335
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246335
    reference: chr 7
allele count: 1
allele frequency: 2.853229856197215e-5
allele num: 35048
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2873G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.465G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*288G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.182G>A
  hgvsp: ENSP00000417395.1:p.Cys61Tyr
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.341G>A
  hgvsp: ENSP00000430418.1:p.Cys114Tyr
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.398G>A
  hgvsp: ENSP00000412876.2:p.Cys133Tyr
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.182G>A
  hgvsp: ENSP00000420352.1:p.Cys61Tyr
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.290G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.398G>A
  hgvsp: ENSP00000262940.7:p.Cys133Tyr
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.182G>A
  hgvsp: ENSP00000428732.1:p.Cys61Tyr
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22727
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 975
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 764
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5252
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14838
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5475
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1172
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13681
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Cys133Tyr
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-102246341-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246341
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246341
    reference: chr 7
allele count: 10
allele frequency: 2.608650284342881e-4
allele num: 38334
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.176G>A
  hgvsp: ENSP00000420352.1:p.Arg59Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.284G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.459G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.392G>A
  hgvsp: ENSP00000262940.7:p.Arg131Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*282G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.335G>A
  hgvsp: ENSP00000430418.1:p.Arg112Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.176G>A
  hgvsp: ENSP00000417395.1:p.Arg59Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.392G>A
  hgvsp: ENSP00000412876.2:p.Arg131Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2867G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.176G>A
  hgvsp: ENSP00000428732.1:p.Arg59Gln
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7247
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 770
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 432
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12904
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 912
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1217
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1970
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23314
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5025
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 557
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1358
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Arg131Gln
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ

7-102246342-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246342
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246342
    reference: chr 7
allele count: 1
allele frequency: 2.528189310815594e-5
allele num: 39554
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.391C>T
  hgvsp: ENSP00000262940.7:p.Arg131Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*281C>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.175C>T
  hgvsp: ENSP00000428732.1:p.Arg59Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.334C>T
  hgvsp: ENSP00000430418.1:p.Arg112Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.283C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.175C>T
  hgvsp: ENSP00000420352.1:p.Arg59Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2866C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.391C>T
  hgvsp: ENSP00000412876.2:p.Arg131Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.175C>T
  hgvsp: ENSP00000417395.1:p.Arg59Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.458C>T
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1250
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7804
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12425
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 924
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4905
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2064
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23380
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 776
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1676
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg131Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum

7-102246344-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246344
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246344
    reference: chr 7
allele count: 12
allele frequency: 2.885725278953444e-4
allele num: 41584
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.281C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.456C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*279C>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.173C>G
  hgvsp: ENSP00000420352.1:p.Ala58Gly
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.389C>G
  hgvsp: ENSP00000412876.2:p.Ala130Gly
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.389C>G
  hgvsp: ENSP00000262940.7:p.Ala130Gly
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.173C>G
  hgvsp: ENSP00000428732.1:p.Ala58Gly
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.173C>G
  hgvsp: ENSP00000417395.1:p.Ala58Gly
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.332C>G
  hgvsp: ENSP00000430418.1:p.Ala111Gly
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2864C>G
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11591
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8866
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1288
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2166
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 560
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1584
  bin: 2.75e1
  variant carriers: 2
hgvs: p.Ala130Gly
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-102246345-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246345
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246345
    reference: chr 7
allele count: 7
allele frequency: 1.643732682102099e-4
allele num: 42586
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.172G>T
  hgvsp: ENSP00000428732.1:p.Ala58Ser
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.172G>T
  hgvsp: ENSP00000420352.1:p.Ala58Ser
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.331G>T
  hgvsp: ENSP00000430418.1:p.Ala111Ser
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*278G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.280G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.172G>T
  hgvsp: ENSP00000417395.1:p.Ala58Ser
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.388G>T
  hgvsp: ENSP00000412876.2:p.Ala130Ser
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2863G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.388G>T
  hgvsp: ENSP00000262940.7:p.Ala130Ser
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.455G>T
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2223
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 11137
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4612
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 779
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23513
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1313
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 264
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ala130Ser
num of homozygotes: 0
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: African
population: East Asian
reference allele: C
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

7-102246348-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246348
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246348
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 45600
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.385G>C
  hgvsp: ENSP00000262940.7:p.Gly129Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.385G>C
  hgvsp: ENSP00000412876.2:p.Gly129Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.169G>C
  hgvsp: ENSP00000417395.1:p.Gly57Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.452G>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*275G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2860G>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.328G>C
  hgvsp: ENSP00000430418.1:p.Gly110Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.277G>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.169G>C
  hgvsp: ENSP00000428732.1:p.Gly57Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.169G>C
  hgvsp: ENSP00000420352.1:p.Gly57Arg
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: AC_Adj0_Filter
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 436
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10958
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10152
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2391
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1353
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23458
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 784
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 982
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gly129Arg
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-102246349-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246349
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246349
    reference: chr 7
allele count: 28
allele frequency: 6.046732604846024e-4
allele num: 46306
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.327A>C
  hgvsp: ENST00000522801.1:c.327A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2859A>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.384A>C
  hgvsp: ENST00000449970.2:c.384A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.384A>C
  hgvsp: ENST00000262940.7:c.384A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.451A>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*274A>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.168A>C
  hgvsp: ENST00000520042.1:c.168A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.168A>C
  hgvsp: ENST00000461209.1:c.168A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.276A>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.168A>C
  hgvsp: ENST00000462172.1:c.168A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4228
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9863
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2456
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 23399
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11341
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 3.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 126
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1801
  bin: 6.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 723
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro128Pro
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: T
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD

7-102246352-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246352
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246352
    reference: chr 7
allele count: 1
allele frequency: 2.011991469156171e-5
allele num: 49702
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.448G>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.381G>C
  hgvsp: ENSP00000262940.7:p.Trp127Cys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.273G>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.165G>C
  hgvsp: ENSP00000420352.1:p.Trp55Cys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.381G>C
  hgvsp: ENSP00000412876.2:p.Trp127Cys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*271G>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2856G>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.165G>C
  hgvsp: ENSP00000428732.1:p.Trp55Cys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.165G>C
  hgvsp: ENSP00000417395.1:p.Trp55Cys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.324G>C
  hgvsp: ENSP00000430418.1:p.Trp108Cys
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13090
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9010
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 799
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1435
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2648
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22908
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3943
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 598
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp127Cys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ

7-102246353-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246353
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246353
    reference: chr 7
allele count: 3
allele frequency: 5.90946696607966e-5
allele num: 50766
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*270G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.447G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.380G>A
  hgvsp: ENSP00000262940.7:p.Trp127Ter
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.272G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.323G>A
  hgvsp: ENSP00000430418.1:p.Trp108Ter
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.164G>A
  hgvsp: ENSP00000428732.1:p.Trp55Ter
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.164G>A
  hgvsp: ENSP00000417395.1:p.Trp55Ter
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.380G>A
  hgvsp: ENSP00000412876.2:p.Trp127Ter
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.164G>A
  hgvsp: ENSP00000420352.1:p.Trp55Ter
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2855G>A
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22777
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2697
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3868
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8764
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 804
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13598
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Trp127Ter
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD

http://identifiers.org/exac.variant/7-102246357-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246357
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246357
    reference: chr 7
allele count: 1
allele frequency: 1.850686604730355e-5
allele num: 54034
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.319G>T
  hgvsp: ENSP00000430418.1:p.Val107Leu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.160G>T
  hgvsp: ENSP00000428732.1:p.Val54Leu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.443G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.160G>T
  hgvsp: ENSP00000420352.1:p.Val54Leu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.376G>T
  hgvsp: ENSP00000262940.7:p.Val126Leu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.376G>T
  hgvsp: ENSP00000412876.2:p.Val126Leu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.268G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2851G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.160G>T
  hgvsp: ENSP00000417395.1:p.Val54Leu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*266G>T
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2918
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15136
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 808
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3703
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8087
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22037
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1498
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 981
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val126Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: African
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: ClippingRankSum

7-102246365-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246365
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246365
    reference: chr 7
allele count: 50
allele frequency: 7.978553647794728e-4
allele num: 62668
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*258G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.435G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.368G>A
  hgvsp: ENSP00000412876.2:p.Arg123Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.311G>A
  hgvsp: ENSP00000430418.1:p.Arg104Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.152G>A
  hgvsp: ENSP00000428732.1:p.Arg51Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.368G>A
  hgvsp: ENSP00000262940.7:p.Arg123Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2843G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.152G>A
  hgvsp: ENSP00000420352.1:p.Arg51Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.152G>A
  hgvsp: ENSP00000417395.1:p.Arg51Gln
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.260G>A
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19041
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6808
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3589
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 19607
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3178
  bin: 1.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1695
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 9.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 7.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 472
  bin: 1.75e1
  variant carriers: 1
hgvs: p.Arg123Gln
num of homozygotes: 1
population: East Asian
population: Other
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

7-102246366-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246366
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246366
    reference: chr 7
allele count: 30
allele frequency: 4.662439388287952e-4
allele num: 64344
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2842C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.151C>T
  hgvsp: ENSP00000417395.1:p.Arg51Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*257C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.367C>T
  hgvsp: ENSP00000262940.7:p.Arg123Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.367C>T
  hgvsp: ENSP00000412876.2:p.Arg123Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.151C>T
  hgvsp: ENSP00000420352.1:p.Arg51Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.310C>T
  hgvsp: ENSP00000430418.1:p.Arg104Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.259C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.151C>T
  hgvsp: ENSP00000428732.1:p.Arg51Trp
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.434C>T
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19867
  bin: 2.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 18970
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1056
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Arg123Trp
num of homozygotes: 2
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: African
population: Other
population: European (Finnish)
reference allele: G
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum

7-102246366-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246366
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246366
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 64344
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2842C>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.151C>A
  hgvsp: ENST00000462172.1:c.151C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.434C>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.151C>A
  hgvsp: ENST00000520042.1:c.151C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.151C>A
  hgvsp: ENST00000461209.1:c.151C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.259C>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*257C>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.367C>A
  hgvsp: ENST00000262940.7:c.367C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.310C>A
  hgvsp: ENST00000522801.1:c.310C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.367C>A
  hgvsp: ENST00000449970.2:c.367C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 18970
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19867
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3066
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6609
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 386
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 145
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg123Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
population: African
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

7-102246378-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246378
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246378
    reference: chr 7
allele count: 1
allele frequency: 1.304665483769961e-5
allele num: 76648
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2830G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.355G>A
  hgvsp: ENSP00000412876.2:p.Glu119Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.139G>A
  hgvsp: ENSP00000428732.1:p.Glu47Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*245G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.298G>A
  hgvsp: ENSP00000430418.1:p.Glu100Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.247G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.139G>A
  hgvsp: ENSP00000417395.1:p.Glu47Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.355G>A
  hgvsp: ENSP00000262940.7:p.Glu119Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.422G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.139G>A
  hgvsp: ENSP00000420352.1:p.Glu47Lys
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14653
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2389
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5521
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 624
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2092
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 886
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 25498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4534
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3475
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 285
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Glu119Lys
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: C
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ

7-102246379-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246379
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246379
    reference: chr 7
allele count: 1
allele frequency: 1.278608873545582e-5
allele num: 78210
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.138C>T
  hgvsp: ENST00000461209.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.246C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.138C>T
  hgvsp: ENST00000462172.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.354C>T
  hgvsp: ENST00000449970.2:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*244C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.421C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2829C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.297C>T
  hgvsp: ENST00000522801.1:c.297C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.354C>T
  hgvsp: ENST00000262940.7:c.354C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.138C>T
  hgvsp: ENST00000520042.1:c.138C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 583
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2155
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2287
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26199
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14070
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4625
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5423
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Gly118Gly
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-102246385-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246385
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246385
    reference: chr 7
allele count: 1
allele frequency: 1.198207481607515e-5
allele num: 83458
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2823G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.132G>T
  hgvsp: ENST00000461209.1:c.132G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.291G>T
  hgvsp: ENST00000522801.1:c.291G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.415G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.348G>T
  hgvsp: ENST00000262940.7:c.348G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.240G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*238G>T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.348G>T
  hgvsp: ENST00000449970.2:c.348G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.132G>T
  hgvsp: ENST00000520042.1:c.132G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.132G>T
  hgvsp: ENST00000462172.1:c.132G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28378
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 487
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val116Val
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD

7-102246385-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246385
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246385
    reference: chr 7
allele count: 2
allele frequency: 2.39641496321503e-5
allele num: 83458
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.291G>A
  hgvsp: ENST00000522801.1:c.291G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.240G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.348G>A
  hgvsp: ENST00000449970.2:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2823G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.132G>A
  hgvsp: ENST00000520042.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.132G>A
  hgvsp: ENST00000461209.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*238G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.415G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.348G>A
  hgvsp: ENST00000262940.7:c.348G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.132G>A
  hgvsp: ENST00000462172.1:c.132G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28378
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 911
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5116
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12012
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5047
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2010
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2347
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 322
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Val116Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

7-102246391-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246391
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246391
    reference: chr 7
allele count: 2
allele frequency: 2.319539803303025e-5
allele num: 86224
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*232G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2817G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.342G>A
  hgvsp: ENST00000449970.2:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.285G>A
  hgvsp: ENST00000522801.1:c.285G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.126G>A
  hgvsp: ENST00000462172.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.342G>A
  hgvsp: ENST00000262940.7:c.342G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.409G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.126G>A
  hgvsp: ENST00000461209.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.234G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.126G>A
  hgvsp: ENST00000520042.1:c.126G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10948
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5502
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4925
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29109
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1989
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 932
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Glu114Glu
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: FS
site quality: QD
site quality: ReadPosRankSum
site quality: DP
site quality: ClippingRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff

7-102246393-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246393
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246393
    reference: chr 7
allele count: 2
allele frequency: 2.301760847047992e-5
allele num: 86890
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.232G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.283G>A
  hgvsp: ENSP00000430418.1:p.Glu95Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.124G>A
  hgvsp: ENSP00000420352.1:p.Glu42Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.407G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.340G>A
  hgvsp: ENSP00000412876.2:p.Glu114Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.340G>A
  hgvsp: ENSP00000262940.7:p.Glu114Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2815G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.124G>A
  hgvsp: ENSP00000417395.1:p.Glu42Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.124G>A
  hgvsp: ENSP00000428732.1:p.Glu42Lys
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*230G>A
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10719
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29202
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 700
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 133
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 591
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4842
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 931
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5683
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27765
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Glu114Lys
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: South Asian
population: Other
population: East Asian
reference allele: C
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff

http://identifiers.org/exac.variant/7-102246394-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246394
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246394
    reference: chr 7
allele count: 5
allele frequency: 7.269343723648629e-5
allele num: 68782
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.339T>G
  hgvsp: ENSP00000262940.7:p.Asp113Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*229T>G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.123T>G
  hgvsp: ENSP00000417395.1:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.123T>G
  hgvsp: ENSP00000420352.1:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.231T>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.406T>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.339T>G
  hgvsp: ENSP00000412876.2:p.Asp113Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.282T>G
  hgvsp: ENSP00000430418.1:p.Asp94Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.123T>G
  hgvsp: ENSP00000428732.1:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2814T>G
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14001
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Asp113Glu
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: European (Finnish)
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum

7-102246394-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246394
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246394
    reference: chr 7
allele count: 10625
allele frequency: 1.544735541275334e-1
allele num: 68782
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.123T>C
  hgvsp: ENST00000462172.1:c.123T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2814T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.123T>C
  hgvsp: ENST00000520042.1:c.123T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.406T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*229T>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.123T>C
  hgvsp: ENST00000461209.1:c.123T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.282T>C
  hgvsp: ENST00000522801.1:c.282T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.339T>C
  hgvsp: ENST00000449970.2:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.231T>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.339T>C
  hgvsp: ENST00000262940.7:c.339T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.25e1
  variant carriers: 1486
genotype depth: GenotypeDepth
  all individuals: 14001
  bin: 2.25e1
  variant carriers: 2781
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 2.5e0
  variant carriers: 1406
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 250
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.75e1
  variant carriers: 205
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 4.75e1
  variant carriers: 378
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 4.25e1
  variant carriers: 601
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 2.75e1
  variant carriers: 1953
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 3.75e1
  variant carriers: 834
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 7.5e0
  variant carriers: 1917
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 1.25e1
  variant carriers: 1334
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 1.75e1
  variant carriers: 2378
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 67
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 9.75e1
  variant carriers: 464
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 65
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 6.25e1
  variant carriers: 133
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 68
genotype quality: GenotypeQuality
  all individuals: 3953
  bin: 9.75e1
  variant carriers: 2067
genotype quality: GenotypeQuality
  all individuals: 999
  bin: 7.75e1
  variant carriers: 376
hgvs: p.Asp113Asp
num of homozygotes: 279
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

7-102246394-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246394
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246394
    reference: chr 7
allele count: 765
allele frequency: 1.11220958971824e-2
allele num: 68782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.282T>A
  hgvsp: ENSP00000430418.1:p.Asp94Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2814T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*229T>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.339T>A
  hgvsp: ENSP00000412876.2:p.Asp113Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.231T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.123T>A
  hgvsp: ENSP00000420352.1:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.123T>A
  hgvsp: ENSP00000417395.1:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.339T>A
  hgvsp: ENSP00000262940.7:p.Asp113Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.406T>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.123T>A
  hgvsp: ENSP00000428732.1:p.Asp41Glu
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 5266
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1025
  bin: 5.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 7144
  bin: 2.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 4.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 3691
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4664
  bin: 1.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 8.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 4953
  bin: 3.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 427
  bin: 7.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 2832
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 234
  bin: 9.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 8.75e1
  variant carriers: 29
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 3.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1512
  bin: 5.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 9.75e1
  variant carriers: 359
genotype depth: GenotypeDepth
  all individuals: 14001
  bin: 2.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 6.75e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 794
  bin: 6.25e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 503
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 2062
  bin: 3.25e1
  variant carriers: 5
hgvs: p.Asp113Glu
num of homozygotes: 1
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: A
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD

7-102246396-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246396
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246396
    reference: chr 7
allele count: 5
allele frequency: 4.94598979147707e-5
allele num: 101092
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.121G>A
  hgvsp: ENSP00000428732.1:p.Asp41Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*227G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.337G>A
  hgvsp: ENSP00000412876.2:p.Asp113Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2812G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.404G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.280G>A
  hgvsp: ENSP00000430418.1:p.Asp94Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.121G>A
  hgvsp: ENSP00000420352.1:p.Asp41Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.121G>A
  hgvsp: ENSP00000417395.1:p.Asp41Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.337G>A
  hgvsp: ENSP00000262940.7:p.Asp113Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.229G>A
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1460
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18640
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Asp113Asn
num of homozygotes: 0
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

7-102246396-CG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246396
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246395
    reference: chr 7
allele count: 1
allele frequency: 9.891979582954141e-6
allele num: 101092
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.279delC
  hgvsp: ENSP00000430418.1:p.Asp94MetfsTer60
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2811delC
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.403delC
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.228delC
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.336delC
  hgvsp: ENSP00000262940.7:p.Asp113MetfsTer60
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.120delC
  hgvsp: ENSP00000428732.1:p.Asp41MetfsTer?
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.120delC
  hgvsp: ENSP00000417395.1:p.Asp41MetfsTer60
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*226delC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.336delC
  hgvsp: ENSP00000412876.2:p.Asp113MetfsTer60
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.120delC
  hgvsp: ENSP00000420352.1:p.Asp41MetfsTer60
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3681
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3677
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6028
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15087
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3884
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5482
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 442
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8932
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1521
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Asp113MetfsTer60
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: Latino
reference allele: CG
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD
site quality: MQ

7-102246397-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246397
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246397
    reference: chr 7
allele count: 3
allele frequency: 2.943831691329435e-5
allele num: 101908
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.279C>T
  hgvsp: ENST00000522801.1:c.279C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.120C>T
  hgvsp: ENST00000520042.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.336C>T
  hgvsp: ENST00000262940.7:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.120C>T
  hgvsp: ENST00000461209.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2811C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.336C>T
  hgvsp: ENST00000449970.2:c.336C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.120C>T
  hgvsp: ENST00000462172.1:c.120C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.403C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.228C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*226C>T
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 5693
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 602
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3714
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2719
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3861
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3220
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1166
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6108
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2557
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16286
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9274
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2791
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Pro112Pro
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ClippingRankSum
site quality: QD

7-102246399-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246399
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246399
    reference: chr 7
allele count: 1
allele frequency: 9.719873252852783e-6
allele num: 102882
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*224C>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.277C>A
  hgvsp: ENSP00000430418.1:p.Pro93Thr
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.334C>A
  hgvsp: ENSP00000262940.7:p.Pro112Thr
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2809C>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.118C>A
  hgvsp: ENSP00000417395.1:p.Pro40Thr
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.334C>A
  hgvsp: ENSP00000412876.2:p.Pro112Thr
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.226C>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.118C>A
  hgvsp: ENSP00000428732.1:p.Pro40Thr
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.118C>A
  hgvsp: ENSP00000420352.1:p.Pro40Thr
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.401C>A
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2737
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2017
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6171
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3863
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17309
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9410
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3481
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1462
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Pro112Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

7-102246400-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246400
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246400
    reference: chr 7
allele count: 3
allele frequency: 2.908893456928984e-5
allele num: 103132
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.333C>A
  hgvsp: ENSP00000412876.2:p.Asp111Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.276C>A
  hgvsp: ENSP00000430418.1:p.Asp92Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.117C>A
  hgvsp: ENSP00000420352.1:p.Asp39Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.117C>A
  hgvsp: ENSP00000428732.1:p.Asp39Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.333C>A
  hgvsp: ENSP00000262940.7:p.Asp111Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.400C>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2808C>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.225C>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.117C>A
  hgvsp: ENSP00000417395.1:p.Asp39Glu
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*223C>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17648
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1165
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3375
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3860
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6145
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1647
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6188
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 879
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2547
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9455
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6333
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 325
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Asp111Glu
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff

7-102246402-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246402
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246402
    reference: chr 7
allele count: 27
allele frequency: 2.598102422971074e-4
allele num: 103922
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.274G>A
  hgvsp: ENSP00000430418.1:p.Asp92Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.115G>A
  hgvsp: ENSP00000420352.1:p.Asp39Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.115G>A
  hgvsp: ENSP00000417395.1:p.Asp39Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.331G>A
  hgvsp: ENSP00000262940.7:p.Asp111Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.115G>A
  hgvsp: ENSP00000428732.1:p.Asp39Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2806G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.331G>A
  hgvsp: ENSP00000412876.2:p.Asp111Asn
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.398G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.223G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*221G>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2097
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18506
  bin: 2.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6261
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6197
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2556
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3876
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 9753
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1303
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 1.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6552
  bin: 6.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 1.75e1
  variant carriers: 2
hgvs: p.Asp111Asn
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP

7-102246403-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246403
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246403
    reference: chr 7
allele count: 1
allele frequency: 9.526894422956004e-6
allele num: 104966
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.397C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2805C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.114C>T
  hgvsp: ENST00000461209.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.114C>T
  hgvsp: ENST00000520042.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.273C>T
  hgvsp: ENST00000522801.1:c.273C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*220C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.222C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.330C>T
  hgvsp: ENST00000262940.7:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.330C>T
  hgvsp: ENST00000449970.2:c.330C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.114C>T
  hgvsp: ENST00000462172.1:c.114C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2634
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 829
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9881
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1775
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6133
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6309
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19726
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2555
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1925
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Val110Val
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
population: African
population: South Asian
population: Other
reference allele: G
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP

http://identifiers.org/exac.variant/7-102246405-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246405
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246405
    reference: chr 7
allele count: 2
allele frequency: 1.88114900581275e-5
allele num: 106318
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.271G>T
  hgvsp: ENSP00000430418.1:p.Val91Phe
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.328G>T
  hgvsp: ENSP00000262940.7:p.Val110Phe
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.328G>T
  hgvsp: ENSP00000412876.2:p.Val110Phe
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.112G>T
  hgvsp: ENSP00000417395.1:p.Val38Phe
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.220G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2803G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.395G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.112G>T
  hgvsp: ENSP00000420352.1:p.Val38Phe
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*218G>T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.112G>T
  hgvsp: ENSP00000428732.1:p.Val38Phe
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2562
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1648
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20840
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1489
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6354
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 878
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 545
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5797
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10080
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 979
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val110Phe
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff

7-102246410-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246410
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246410
    reference: chr 7
allele count: 32
allele frequency: 2.947570096901367e-4
allele num: 108564
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.107C>T
  hgvsp: ENSP00000417395.1:p.Thr36Met
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.323C>T
  hgvsp: ENSP00000262940.7:p.Thr108Met
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*213C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.215C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.323C>T
  hgvsp: ENSP00000412876.2:p.Thr108Met
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.107C>T
  hgvsp: ENSP00000420352.1:p.Thr36Met
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2798C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.390C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.107C>T
  hgvsp: ENSP00000428732.1:p.Thr36Met
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.266C>T
  hgvsp: ENSP00000430418.1:p.Thr89Met
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6427
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1651
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22498
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4967
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 10266
  bin: 2.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2566
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 177
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3899
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1624
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 358
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8980
  bin: 9.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Thr108Met
num of homozygotes: 0
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-102246412-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246412
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246412
    reference: chr 7
allele count: 1
allele frequency: 9.204035048965466e-6
allele num: 108648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.105G>T
  hgvsp: ENST00000520042.1:c.105G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.321G>T
  hgvsp: ENST00000262940.7:c.321G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*211G>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2796G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.321G>T
  hgvsp: ENST00000449970.2:c.321G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.264G>T
  hgvsp: ENST00000522801.1:c.264G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.388G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.105G>T
  hgvsp: ENST00000461209.1:c.105G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.105G>T
  hgvsp: ENST00000462172.1:c.105G>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.213G>T
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu107Leu
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: MQ
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: DP

7-102246412-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246412
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246412
    reference: chr 7
allele count: 1
allele frequency: 9.204035048965466e-6
allele num: 108648
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.321G>C
  hgvsp: ENST00000449970.2:c.321G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.105G>C
  hgvsp: ENST00000461209.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*211G>C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.105G>C
  hgvsp: ENST00000520042.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.321G>C
  hgvsp: ENST00000262940.7:c.321G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.105G>C
  hgvsp: ENST00000462172.1:c.105G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2796G>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.264G>C
  hgvsp: ENST00000522801.1:c.264G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.213G>C
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.388G>C
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1686
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 486
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6432
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2565
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10300
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3900
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 882
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1260
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Leu107Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

7-102246426-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246426
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246426
    reference: chr 7
allele count: 3
allele frequency: 2.747403703500192e-5
allele num: 109194
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.307G>A
  hgvsp: ENSP00000262940.7:p.Gly103Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.199G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.91G>A
  hgvsp: ENSP00000428732.1:p.Gly31Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*197G>A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.91G>A
  hgvsp: ENSP00000417395.1:p.Gly31Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.307G>A
  hgvsp: ENSP00000412876.2:p.Gly103Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.250G>A
  hgvsp: ENSP00000430418.1:p.Gly84Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.91G>A
  hgvsp: ENSP00000420352.1:p.Gly31Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.374G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2782G>A
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1305
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1170
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1138
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 287
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1967
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2569
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21207
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 600
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6545
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9000
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 2013
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly103Arg
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: C
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: DP

7-102246427-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246427
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246427
    reference: chr 7
allele count: 25
allele frequency: 2.289251506327491e-4
allele num: 109206
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.90C>T
  hgvsp: ENST00000461209.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*196C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2781C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.198C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.306C>T
  hgvsp: ENST00000449970.2:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.90C>T
  hgvsp: ENST00000462172.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.90C>T
  hgvsp: ENST00000520042.1:c.90C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.373C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.306C>T
  hgvsp: ENST00000262940.7:c.306C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.249C>T
  hgvsp: ENST00000522801.1:c.249C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10612
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 333
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Ser102Ser
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff

7-102246427-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246427
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246427
    reference: chr 7
allele count: 1
allele frequency: 9.157006025309965e-6
allele num: 109206
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.249C>A
  hgvsp: ENSP00000430418.1:p.Ser83Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.198C>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.90C>A
  hgvsp: ENSP00000420352.1:p.Ser30Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.90C>A
  hgvsp: ENSP00000428732.1:p.Ser30Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.306C>A
  hgvsp: ENSP00000262940.7:p.Ser102Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.306C>A
  hgvsp: ENSP00000412876.2:p.Ser102Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.373C>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.90C>A
  hgvsp: ENSP00000417395.1:p.Ser30Arg
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*196C>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2781C>A
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2571
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1169
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1301
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21021
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1658
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6594
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 599
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 798
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 885
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10612
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3915
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 464
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1396
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser102Arg
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: QD

7-102246437-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246437
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246437
    reference: chr 7
allele count: 2
allele frequency: 1.828320687448578e-5
allele num: 109390
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.366-3C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2771C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.188C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.83-3C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.242-3C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.83-3C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.83-3C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*189-3C>T
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.299-3C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.299-3C>T
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 734
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2025
  bin: 8.25e1
  variant carriers: 0
hgvs: c.299-3C>T
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
reference allele: G
site quality: MQ
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ClippingRankSum
site quality: DP

7-102246437-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246437
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246437
    reference: chr 7
allele count: 1
allele frequency: 9.141603437242892e-6
allele num: 109390
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.366-3C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.299-3C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.83-3C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.83-3C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.83-3C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.188C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.299-3C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*189-3C>G
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.242-3C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2771C>G
  variant of: http://identifiers.org/hgnc/23181
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1656
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1742
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4307
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20335
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2198
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10672
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 601
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1171
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2398
  bin: 7.25e1
  variant carriers: 0
hgvs: c.299-3C>G
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: G
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD

7-102246447-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246447
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246447
    reference: chr 7
allele count: 20971
allele frequency: 2.193573356205937e-1
allele num: 95602
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.299-13G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2761G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.242-13G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.299-13G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.83-13G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.178G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*189-13G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.83-13G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.83-13G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.366-13G>A
  variant of: http://identifiers.org/hgnc/23181
canonical: false
consequence: non coding transcript exon
filter: InbreedingCoeff_Filter
genotype depth: GenotypeDepth
  all individuals: 1182
  bin: 6.75e1
  variant carriers: 719
genotype depth: GenotypeDepth
  all individuals: 1469
  bin: 6.25e1
  variant carriers: 845
genotype depth: GenotypeDepth
  all individuals: 2961
  bin: 4.75e1
  variant carriers: 1567
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 9.25e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 441
  bin: 8.75e1
  variant carriers: 293
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 5.75e1
  variant carriers: 1065
genotype depth: GenotypeDepth
  all individuals: 1119
  bin: 2.5e0
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 5044
  bin: 3.75e1
  variant carriers: 2202
genotype depth: GenotypeDepth
  all individuals: 8597
  bin: 2.75e1
  variant carriers: 2429
genotype depth: GenotypeDepth
  all individuals: 10988
  bin: 2.25e1
  variant carriers: 2322
genotype depth: GenotypeDepth
  all individuals: 2303
  bin: 5.25e1
  variant carriers: 1293
genotype depth: GenotypeDepth
  all individuals: 522
  bin: 8.25e1
  variant carriers: 311
genotype depth: GenotypeDepth
  all individuals: 3951
  bin: 4.25e1
  variant carriers: 1945
genotype depth: GenotypeDepth
  all individuals: 3104
  bin: 1.25e1
  variant carriers: 1072
genotype depth: GenotypeDepth
  all individuals: 2701
  bin: 7.5e0
  variant carriers: 455
genotype depth: GenotypeDepth
  all individuals: 1923
  bin: 9.75e1
  variant carriers: 1281
genotype depth: GenotypeDepth
  all individuals: 742
  bin: 7.75e1
  variant carriers: 482
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 7.25e1
  variant carriers: 526
genotype depth: GenotypeDepth
  all individuals: 3017
  bin: 1.75e1
  variant carriers: 1719
genotype depth: GenotypeDepth
  all individuals: 6855
  bin: 3.25e1
  variant carriers: 2520
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 6.75e1
  variant carriers: 550
genotype quality: GenotypeQuality
  all individuals: 1158
  bin: 5.25e1
  variant carriers: 560
genotype quality: GenotypeQuality
  all individuals: 13739
  bin: 6.25e1
  variant carriers: 553
genotype quality: GenotypeQuality
  all individuals: 1224
  bin: 4.25e1
  variant carriers: 609
num of homozygotes: 99
population: Other
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ

7-102246451-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246451
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246451
    reference: chr 7
allele count: 2
allele frequency: 1.815771793800955e-5
allele num: 110146
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2757C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.83-17C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.299-17C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.83-17C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*189-17C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.366-17C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.242-17C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.83-17C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.174C>G
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.299-17C>G
  variant of: http://identifiers.org/hgnc/23181
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3322
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1629
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4474
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1779
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9589
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12713
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3413
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5952
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2424
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 859
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 405
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7421
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 720
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1145
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

7-102246456-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246456
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246456
    reference: chr 7
allele count: 684
allele frequency: 6.250685382169097e-3
allele num: 109428
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.83-22C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2752C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.169C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.83-22C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.366-22C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.242-22C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.299-22C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.299-22C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.83-22C>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*189-22C>T
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3435
  bin: 4.25e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.75e1
  variant carriers: 28
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 9.75e1
  variant carriers: 64
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 8.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 5.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 5953
  bin: 3.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 3470
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 6.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 1820
  bin: 4.75e1
  variant carriers: 85
genotype depth: GenotypeDepth
  all individuals: 4915
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 5.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 8.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 12278
  bin: 2.75e1
  variant carriers: 35
genotype depth: GenotypeDepth
  all individuals: 11264
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 9435
  bin: 3.25e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 2805
  bin: 1.75e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 6.75e1
  variant carriers: 40
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 9.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 2467
  bin: 7.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 863
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 2.5e0
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 2483
  bin: 7.25e1
  variant carriers: 15
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: African
reference allele: G
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP

http://identifiers.org/exac.variant/7-102246459-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246459
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246459
    reference: chr 7
allele count: 1
allele frequency: 9.168592071001577e-6
allele num: 109068
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.83-25G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.166G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.242-25G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.299-25G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2749G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.299-25G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.83-25G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.83-25G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.366-25G>T
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*189-25G>T
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10714
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6020
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1819
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9482
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3110
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12190
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5294
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3423
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 407
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1474
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26721
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: MQ

7-102246461-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 102246461
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 102246461
    reference: chr 7
allele count: 4
allele frequency: 3.704870051682937e-5
allele num: 107966
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428448
  ensembl transcript: ENST00000521076
  gene symbol: RASA4
  hgvsc: ENST00000521076.1:c.82+2747G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000205236
  ensembl protein: ENSP00000429397
  ensembl transcript: ENST00000519541
  gene symbol: RP11-514P8.6
  hgvsc: ENST00000519541.1:c.*189-27G>A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000430418
  ensembl transcript: ENST00000522801
  gene symbol: RASA4
  hgvsc: ENST00000522801.1:c.242-27G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000523568
  gene symbol: RASA4
  hgvsc: ENST00000523568.1:n.366-27G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000428732
  ensembl transcript: ENST00000520042
  gene symbol: RASA4
  hgvsc: ENST00000520042.1:c.83-27G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000412876
  ensembl transcript: ENST00000449970
  gene symbol: RASA4
  hgvsc: ENST00000449970.2:c.299-27G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000417395
  ensembl transcript: ENST00000462172
  gene symbol: RASA4
  hgvsc: ENST00000462172.1:c.83-27G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000262940
  ensembl transcript: ENST00000262940
  gene symbol: RASA4
  hgvsc: ENST00000262940.7:c.299-27G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000105808
  ensembl transcript: ENST00000519878
  gene symbol: RASA4
  hgvsc: ENST00000519878.1:n.164G>A
  variant of: http://identifiers.org/hgnc/23181
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000105808
  ensembl protein: ENSP00000420352
  ensembl transcript: ENST00000461209
  gene symbol: RASA4
  hgvsc: ENST00000461209.1:c.83-27G>A
  variant of: http://identifiers.org/hgnc/23181
canonical: false
consequence: non coding transcript exon
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1766
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11557
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3954
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 9371
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1958
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6173
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9395
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6024
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2404
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2186
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD

GenotypeQuality
all individuals: 14
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1022
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 303
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 360
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8109
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 322
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1306
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.285347043701799e-3
allele num: 778
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 5.5e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.437e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.14e-2

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 1.55659e5

VQSLOD
type: SiteQuality
SIO_000300: -5.443e0

GenotypeQuality
all individuals: 454
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1404
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 11028
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 116
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1003
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 236
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 98
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 116
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 398
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1086
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1360
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 162
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

QD
type: SiteQuality
SIO_000300: 4.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.676e1

DP
type: SiteQuality
SIO_000300: 1.79442e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.489999999999999e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.414e0

MQRankSum
type: SiteQuality
SIO_000300: 7.2e-1

GenotypeQuality
all individuals: 407
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11240
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 255
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 34
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1014
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1185
bin: 1.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 96
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 122
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.429420505200594e-4
allele num: 1346
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1148
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.427184466019417e-3
allele num: 412
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.45e-2

FS
type: SiteQuality
SIO_000300: 9.226000000000001e0

QD
type: SiteQuality
SIO_000300: 3.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

MQ
type: SiteQuality
SIO_000300: 2.489e1

DP
type: SiteQuality
SIO_000300: 1.84101e5

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.044e0

GenotypeQuality
all individuals: 6
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 183
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26689
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 576
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1623
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1319
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 32
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13557
bin: 2.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 302
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 246
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1398
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.552795031055901e-3
allele num: 644
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 160
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.073e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.7e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -3.298e0

MQRankSum
type: SiteQuality
SIO_000300: 1.8e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.551e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

QD
type: SiteQuality
SIO_000300: 6.32e0

DP
type: SiteQuality
SIO_000300: 2.10663e5

MQ
type: SiteQuality
SIO_000300: 3.034e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.8e-2

GenotypeQuality
all individuals: 611
bin: 6.25e1
variant carriers: 2

GenotypeQuality
all individuals: 26258
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 6
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14370
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1325
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 635
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1176
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 3.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 170
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2034
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1440
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 32
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 266
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.299e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.411e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.46e-2

QD
type: SiteQuality
SIO_000300: 9.35e0

DP
type: SiteQuality
SIO_000300: 2.18648e5

GenotypeQuality
all individuals: 101
bin: 6.75e1
variant carriers: 5

GenotypeQuality
all individuals: 2410
bin: 1.75e1
variant carriers: 2

GenotypeQuality
all individuals: 24587
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 763
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1256
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1738
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 9

GenotypeQuality
all individuals: 20
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 774
bin: 6.25e1
variant carriers: 4

GenotypeQuality
all individuals: 62
bin: 5.25e1
variant carriers: 2

GenotypeQuality
all individuals: 10
bin: 8.75e1
variant carriers: 3

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 1.657458563535912e-2
allele num: 362
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 444
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.353179972936401e-3
allele num: 1478
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 13
allele frequency: 4.800590841949779e-3
allele num: 2708
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 48
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.38359e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 2.442e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.21e-2

MQ
type: SiteQuality
SIO_000300: 2.524e1

VQSLOD
type: SiteQuality
SIO_000300: -5.167e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.495e0

QD
type: SiteQuality
SIO_000300: 4.6e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

GenotypeQuality
all individuals: 16331
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
all individuals: 106
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3836
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.329433661260303e-4
allele num: 7522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 8.417508417508417e-4
allele num: 1188
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.007e0

DP
type: SiteQuality
SIO_000300: 3.8155e5

BaseQRankSum
type: SiteQuality
SIO_000300: -2.18e0

VQSLOD
type: SiteQuality
SIO_000300: -4.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

MQRankSum
type: SiteQuality
SIO_000300: -6.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.86e-2

MQ
type: SiteQuality
SIO_000300: 2.941e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.5e-1

QD
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 75
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GenotypeQuality
all individuals: 6716
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2348
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4732
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 180
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1110
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10284
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.4108e5

VQSLOD
type: SiteQuality
SIO_000300: -4.315e0

QD
type: SiteQuality
SIO_000300: 9.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.19e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.024e1

GenotypeQuality
all individuals: 139
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 226
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GenotypeQuality
all individuals: 452
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variant carriers: 0

East Asian
type: Population
allele count: 11
allele frequency: 3.141062250142775e-3
allele num: 3502
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.923976608187134e-3
allele num: 342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2432
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4246
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3536
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22298
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8124
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 8.699999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.68e-2

DP
type: SiteQuality
SIO_000300: 6.54388e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.89e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.689e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.8e-1

MQ
type: SiteQuality
SIO_000300: 3.09e1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.39e0

QD
type: SiteQuality
SIO_000300: 5.52e0

GenotypeQuality
all individuals: 262
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 112
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variant carriers: 2

GenotypeQuality
all individuals: 18412
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 406
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4440
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4266
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2946
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.037489812550937e-4
allele num: 4908
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 2.608436428677895e-4
allele num: 26836
num of homozygotes: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9342
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.31e-1

QD
type: SiteQuality
SIO_000300: 1.445e1

VQSLOD
type: SiteQuality
SIO_000300: -3.985e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.84e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.94e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.28e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.26e-2

DP
type: SiteQuality
SIO_000300: 7.28352e5

MQ
type: SiteQuality
SIO_000300: 3.135e1

GenotypeQuality
all individuals: 358
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variant carriers: 0

GenotypeQuality
all individuals: 5095
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GenotypeQuality
all individuals: 267
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 647
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GenotypeQuality
all individuals: 778
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variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5152
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28368
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9782
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4454
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3102
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 422
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.018e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.41e-2

MQRankSum
type: SiteQuality
SIO_000300: 5.72e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.183e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.72e-1

DP
type: SiteQuality
SIO_000300: 7.52767e5

MQ
type: SiteQuality
SIO_000300: 2.697e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 990
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 131
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 2523
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variant carriers: 1

GenotypeQuality
all individuals: 19051
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3130
num of homozygotes: 0

Latino
type: Population
allele count: 3
allele frequency: 6.231823847112588e-4
allele num: 4814
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 424
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4490
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5184
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 28576
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.51e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.884e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.43e-2

DP
type: SiteQuality
SIO_000300: 7.58614e5

FS
type: SiteQuality
SIO_000300: 7.95e-1

MQ
type: SiteQuality
SIO_000300: 3.299e1

QD
type: SiteQuality
SIO_000300: 1.82e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.15e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.1e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5504
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 1.293577388267253e-4
allele num: 30922
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 4822
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10506
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 450
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5318
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 4.517e0

MQRankSum
type: SiteQuality
SIO_000300: -5.45e-1

DP
type: SiteQuality
SIO_000300: 7.93214e5

BaseQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.04e-1

QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 3.243e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.28e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.134e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.68e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 3.75e-1
allele num: 8
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.666666666666667e-1
allele num: 6
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.214e3

MQ
type: SiteQuality
SIO_000300: 3.229e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.01e-2

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

FS
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SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

VQSLOD
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QD
type: SiteQuality
SIO_000300: 1.034e1

ReadPosRankSum
type: SiteQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4
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Other
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: NaN
allele num: 0
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.24e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.235e3

VQSLOD
type: SiteQuality
SIO_000300: -1.19e0

BaseQRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.5e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.071e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 5.15e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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East Asian
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African
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European (Non-Finnish)
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European (Finnish)
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South Asian
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MQRankSum
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ReadPosRankSum
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DP
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QD
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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ClippingRankSum
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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South Asian
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Other
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Latino
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African
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European (Non-Finnish)
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European (Finnish)
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ClippingRankSum
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VQSLOD
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InbreedingCoeff
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MQRankSum
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DP
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BaseQRankSum
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FS
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ReadPosRankSum
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QD
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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African
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European (Finnish)
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European (Non-Finnish)
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Latino
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South Asian
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Other
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BaseQRankSum
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InbreedingCoeff
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ClippingRankSum
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MQ
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DP
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MQRankSum
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VQSLOD
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FS
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QD
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ReadPosRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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Other
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African
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allele frequency: 1.458885941644562e-2
allele num: 1508
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Latino
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allele frequency: 3.184713375796179e-3
allele num: 314
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South Asian
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European (Non-Finnish)
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allele frequency: 2.388915432393693e-4
allele num: 4186
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European (Finnish)
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allele frequency: 0.0e0
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ReadPosRankSum
type: SiteQuality
SIO_000300: 5.99e-1

FS
type: SiteQuality
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QD
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DP
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BaseQRankSum
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VQSLOD
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MQRankSum
type: SiteQuality
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MQ
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ClippingRankSum
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SIO_000300: 4.5e-2

InbreedingCoeff
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SIO_000300: -6.54e-2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele frequency: 0.0e0
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South Asian
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Latino
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Other
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European (Non-Finnish)
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African
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East Asian
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FS
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MQ
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InbreedingCoeff
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VQSLOD
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ClippingRankSum
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BaseQRankSum
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ReadPosRankSum
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DP
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MQRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Non-Finnish)
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allele num: 5188
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South Asian
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allele num: 7092
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African
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East Asian
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Latino
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Other
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European (Finnish)
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QD
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FS
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ReadPosRankSum
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InbreedingCoeff
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MQRankSum
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VQSLOD
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BaseQRankSum
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MQ
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ClippingRankSum
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DP
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Latino
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allele frequency: 2.798507462686567e-1
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European (Finnish)
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South Asian
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African
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East Asian
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Other
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European (Non-Finnish)
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allele frequency: 2.611306385471587e-1
allele num: 6828
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FS
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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QD
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VQSLOD
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ClippingRankSum
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DP
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ReadPosRankSum
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MQ
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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European (Finnish)
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African
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Latino
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Other
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European (Non-Finnish)
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allele frequency: 0.0e0
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East Asian
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QD
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BaseQRankSum
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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FS
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MQRankSum
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DP
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MQ
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 2.25e1
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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bin: 6.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 276
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 7.903888713246918e-5
allele num: 12652
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1234
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2576
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1746
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4614
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 2.382654276864427e-4
allele num: 8394
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 254
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 6.1889e5

MQRankSum
type: SiteQuality
SIO_000300: 5.659999999999999e-1

MQ
type: SiteQuality
SIO_000300: 3.466e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.6e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 4.21e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.383e0

QD
type: SiteQuality
SIO_000300: 2.83e0

FS
type: SiteQuality
SIO_000300: 1.205e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.0e-1

GenotypeQuality
all individuals: 239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19420
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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bin: 6.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2766
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13424
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1300
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4792
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.35e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.7e-2

MQ
type: SiteQuality
SIO_000300: 2.968e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.36e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.396e0

DP
type: SiteQuality
SIO_000300: 6.43703e5

QD
type: SiteQuality
SIO_000300: 5.55e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.88e0

GenotypeQuality
all individuals: 14049
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 1855
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 5016
bin: 6.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1328
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13772
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8608
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 9.784735812133072e-4
allele num: 2044
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2856
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 264
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.21e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.223e0

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

QD
type: SiteQuality
SIO_000300: 7.66e0

MQ
type: SiteQuality
SIO_000300: 3.548e1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 6.51625e5

BaseQRankSum
type: SiteQuality
SIO_000300: 9.22e-1

GenotypeQuality
all individuals: 286
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 931
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1158
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variant carriers: 0

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 439
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variant carriers: 0

GenotypeQuality
all individuals: 560
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variant carriers: 0

GenotypeQuality
all individuals: 61
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variant carriers: 0

GenotypeQuality
all individuals: 5661
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 1.150218541522889e-4
allele num: 8694
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2192
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5010
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 272
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3026
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14460
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1394
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.18e-1

MQ
type: SiteQuality
SIO_000300: 3.578e1

FS
type: SiteQuality
SIO_000300: 2.331e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.07e-2

QD
type: SiteQuality
SIO_000300: 7.86e0

DP
type: SiteQuality
SIO_000300: 6.65509e5

ClippingRankSum
type: SiteQuality
SIO_000300: -8.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -3.242e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.23e-1

GenotypeQuality
all individuals: 12050
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1696
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1327
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variant carriers: 1

GenotypeQuality
all individuals: 21730
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variant carriers: 0

GenotypeQuality
all individuals: 159
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GenotypeQuality
all individuals: 1164
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 806
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variant carriers: 0

GenotypeQuality
all individuals: 2165
bin: 9.75e1
variant carriers: 6

GenotypeQuality
all individuals: 461
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variant carriers: 0

GenotypeQuality
all individuals: 1214
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variant carriers: 0

GenotypeQuality
all individuals: 7532
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 293
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variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 265
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variant carriers: 1

GenotypeQuality
all individuals: 182
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variant carriers: 0

GenotypeQuality
all individuals: 603
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 546
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 3.711952487008166e-4
allele num: 16164
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1568
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3370
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.885003885003885e-4
allele num: 2574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8988
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 5.584512285927029e-4
allele num: 5372
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 298
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.23e-1

DP
type: SiteQuality
SIO_000300: 7.11361e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.543e0

MQRankSum
type: SiteQuality
SIO_000300: -2.5e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.8e-2

FS
type: SiteQuality
SIO_000300: 7.17e-1

QD
type: SiteQuality
SIO_000300: 2.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.57e-1

MQ
type: SiteQuality
SIO_000300: 3.446e1

GenotypeQuality
all individuals: 625
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1048
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variant carriers: 0

GenotypeQuality
all individuals: 1417
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variant carriers: 0

GenotypeQuality
all individuals: 125
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GenotypeQuality
all individuals: 555
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variant carriers: 0

GenotypeQuality
all individuals: 297
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GenotypeQuality
all individuals: 2165
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GenotypeQuality
all individuals: 1715
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GenotypeQuality
all individuals: 273
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 8124
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16800
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1638
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.684598378776713e-4
allele num: 2714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3504
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9082
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.674e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.61e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -8.76e-1

FS
type: SiteQuality
SIO_000300: 1.8959e1

QD
type: SiteQuality
SIO_000300: 6.33e0

MQRankSum
type: SiteQuality
SIO_000300: 1.81e0

DP
type: SiteQuality
SIO_000300: 7.25474e5

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: -4.905e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.72e-1

GenotypeQuality
all individuals: 1551
bin: 6.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 221
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GenotypeQuality
all individuals: 9206
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 318
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2990
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1752
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9224
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17932
num of homozygotes: 0

African
type: Population
allele count: 12
allele frequency: 2.121640735502122e-3
allele num: 5656
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3712
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.48207e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.46e-2

MQ
type: SiteQuality
SIO_000300: 3.73e1

VQSLOD
type: SiteQuality
SIO_000300: -3.219e0

FS
type: SiteQuality
SIO_000300: 7.16e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.54e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.05e-1

QD
type: SiteQuality
SIO_000300: 2.57e0

MQRankSum
type: SiteQuality
SIO_000300: 3.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.3e-2

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 514
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GenotypeQuality
all individuals: 1553
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1824
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3128
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 3.785830178474851e-4
allele num: 18490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9288
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5746
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3784
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.6035e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.171e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.672e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.22e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.33e-2

QD
type: SiteQuality
SIO_000300: 1.029e1

MQRankSum
type: SiteQuality
SIO_000300: 1.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.56e-1

MQ
type: SiteQuality
SIO_000300: 3.573e1

GenotypeQuality
all individuals: 318
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2183
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1482
bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9598
bin: 7.5e0
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22731
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 700
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 633
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 195
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.25e1
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GenotypeQuality
all individuals: 11052
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 693
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 540
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4054
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1994
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 342
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5996
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9544
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20176
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.42e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 7.42e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

DP
type: SiteQuality
SIO_000300: 7.92242e5

MQ
type: SiteQuality
SIO_000300: 4.348e1

QD
type: SiteQuality
SIO_000300: 1.191e1

VQSLOD
type: SiteQuality
SIO_000300: -2.602e0

BaseQRankSum
type: SiteQuality
SIO_000300: -7.42e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.42e-1

GenotypeQuality
all individuals: 9308
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 321
bin: 9.25e1
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GenotypeQuality
all individuals: 715
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 8.75e1
variant carriers: 4

GenotypeQuality
all individuals: 11349
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 2

GenotypeQuality
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bin: 9.75e1
variant carriers: 16

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 1

GenotypeQuality
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bin: 8.25e1
variant carriers: 1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1401
bin: 3.25e1
variant carriers: 1

Latino
type: Population
allele count: 3
allele frequency: 8.351893095768374e-4
allele num: 3592
num of homozygotes: 0

African
type: Population
allele count: 22
allele frequency: 3.647214854111406e-3
allele num: 6032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4132
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.865706500583885e-5
allele num: 20552
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2040
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 5.555555555555556e-3
allele num: 360
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.867e1

FS
type: SiteQuality
SIO_000300: 3.059e0

MQRankSum
type: SiteQuality
SIO_000300: 4.82e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.013e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.8e-2

DP
type: SiteQuality
SIO_000300: 8.02176e5

BaseQRankSum
type: SiteQuality
SIO_000300: -1.363e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 2.64e-1

QD
type: SiteQuality
SIO_000300: 3.97e0

GenotypeQuality
all individuals: 8536
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1986
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 748
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variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 5.25e1
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GenotypeQuality
all individuals: 1291
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 277
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variant carriers: 0

GenotypeQuality
all individuals: 904
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 512
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 571
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 333
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2214
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 241
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.277904328018223e-4
allele num: 4390
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9876
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 374
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4072
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2212
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22410
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-2

QD
type: SiteQuality
SIO_000300: 7.95e0

DP
type: SiteQuality
SIO_000300: 8.38102e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.2e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.355e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.34e-1

MQ
type: SiteQuality
SIO_000300: 3.738e1

GenotypeQuality
all individuals: 621
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 508
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 8331
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22400
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 238
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 722
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 703
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variant carriers: 0

GenotypeQuality
all individuals: 762
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variant carriers: 0

GenotypeQuality
all individuals: 13657
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variant carriers: 0

GenotypeQuality
all individuals: 1283
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variant carriers: 1

GenotypeQuality
all individuals: 151
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GenotypeQuality
all individuals: 338
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variant carriers: 0

GenotypeQuality
all individuals: 2039
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1357
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 227
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2216
bin: 9.75e1
variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 386
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4460
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4244
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6422
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 23030
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 3.016894609814964e-4
allele num: 9944
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.19e-1

FS
type: SiteQuality
SIO_000300: 1.2852e1

MQ
type: SiteQuality
SIO_000300: 3.74e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.93e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: -4.671e0

MQRankSum
type: SiteQuality
SIO_000300: 2.47e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.556e0

DP
type: SiteQuality
SIO_000300: 8.48316e5

QD
type: SiteQuality
SIO_000300: 1.167e1

GenotypeQuality
all individuals: 327
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 318
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1303
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2227
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 600
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7520
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21406
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 626
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 754
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 257
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 795
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variant carriers: 0

GenotypeQuality
all individuals: 2238
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14862
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.019938896928767e-5
allele num: 24876
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4704
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 402
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.54e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-2

MQ
type: SiteQuality
SIO_000300: 3.759e1

FS
type: SiteQuality
SIO_000300: 3.211e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.72e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.169e0

QD
type: SiteQuality
SIO_000300: 1.185e1

DP
type: SiteQuality
SIO_000300: 8.7996e5

VQSLOD
type: SiteQuality
SIO_000300: -3.322e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.78e-1

GenotypeQuality
all individuals: 19501
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 225
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1105
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 495
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6385
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variant carriers: 0

GenotypeQuality
all individuals: 232
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1074
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 869
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2657
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variant carriers: 0

GenotypeQuality
all individuals: 558
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variant carriers: 0

GenotypeQuality
all individuals: 250
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variant carriers: 0

GenotypeQuality
all individuals: 275
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variant carriers: 0

GenotypeQuality
all individuals: 177
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GenotypeQuality
all individuals: 723
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2285
bin: 9.75e1
variant carriers: 40

GenotypeQuality
all individuals: 295
bin: 8.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19004
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 380
bin: 9.25e1
variant carriers: 1

East Asian
type: Population
allele count: 21
allele frequency: 3.950338600451467e-3
allele num: 5316
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 456
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5808
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.751031636863824e-4
allele num: 7270
num of homozygotes: 0

South Asian
type: Population
allele count: 27
allele frequency: 2.485730068127417e-3
allele num: 10862
num of homozygotes: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3166
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29790
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 1.145e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

MQ
type: SiteQuality
SIO_000300: 3.963e1

QD
type: SiteQuality
SIO_000300: 8.220000000000001e0

MQRankSum
type: SiteQuality
SIO_000300: 9.92e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.42e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.751e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.26e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.47e-1

DP
type: SiteQuality
SIO_000300: 9.63629e5

GenotypeQuality
all individuals: 386
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 212
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 6268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 253
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 242
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 737
bin: 8.25e1
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GenotypeQuality
all individuals: 19804
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2760
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2274
bin: 9.75e1
variant carriers: 22

GenotypeQuality
all individuals: 18896
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1038
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 273
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 301
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 3.33667000333667e-4
allele num: 5994
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.624431448992852e-4
allele num: 30780
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 2.74323335771763e-3
allele num: 5468
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.819836214740673e-4
allele num: 10990
num of homozygotes: 1

African
type: Population
allele count: 5
allele frequency: 6.784260515603799e-4
allele num: 7370
num of homozygotes: 1

Other
type: Population
allele count: 1
allele frequency: 2.164502164502165e-3
allele num: 462
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3280
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 9.81257e5

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

MQ
type: SiteQuality
SIO_000300: 4.023e1

VQSLOD
type: SiteQuality
SIO_000300: -1.548e0

FS
type: SiteQuality
SIO_000300: 1.153e0

QD
type: SiteQuality
SIO_000300: 8.119999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

GenotypeQuality
all individuals: 556
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1056
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 273
bin: 4.75e1
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GenotypeQuality
all individuals: 18896
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
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variant carriers: 0

GenotypeQuality
all individuals: 529
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 737
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variant carriers: 0

GenotypeQuality
all individuals: 974
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variant carriers: 0

GenotypeQuality
all individuals: 253
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 301
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GenotypeQuality
all individuals: 242
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GenotypeQuality
all individuals: 212
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GenotypeQuality
all individuals: 6268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2274
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19804
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 899
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2760
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 30780
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5468
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 462
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5994
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10990
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 3280
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.120000000000001e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.03e-1

QD
type: SiteQuality
SIO_000300: 8.119999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.68e-2

FS
type: SiteQuality
SIO_000300: 1.153e0

VQSLOD
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SIO_000300: -1.548e0

MQ
type: SiteQuality
SIO_000300: 4.023e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.86e-1

DP
type: SiteQuality
SIO_000300: 9.81257e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 1
allele frequency: 1.602564102564103e-4
allele num: 6240
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11982
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 534
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7540
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4112
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8148
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 38092
num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
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MQRankSum
type: SiteQuality
SIO_000300: 1.95e-1

FS
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SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.12e-2

DP
type: SiteQuality
SIO_000300: 1.088692e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.01e-1

MQ
type: SiteQuality
SIO_000300: 3.913e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.560688313018539e-5
allele num: 39052
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 538
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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ReadPosRankSum
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QD
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MQRankSum
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BaseQRankSum
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SIO_000300: -8.47e-1

MQ
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SIO_000300: 3.874e1

DP
type: SiteQuality
SIO_000300: 1.102489e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.16e-2

FS
type: SiteQuality
SIO_000300: 3.956e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.51e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12520
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8466
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.356823002592505e-5
allele num: 42430
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 6634
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 7.5e0

FS
type: SiteQuality
SIO_000300: 1.477e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.11e-1

DP
type: SiteQuality
SIO_000300: 1.147642e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

MQ
type: SiteQuality
SIO_000300: 4.587e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.981e0

MQRankSum
type: SiteQuality
SIO_000300: -5.14e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.268999999999999e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.713646005185011e-5
allele num: 42430
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4530
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8296
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12520
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.15e-2

MQ
type: SiteQuality
SIO_000300: 4.587e1

ClippingRankSum
type: SiteQuality
SIO_000300: -6.0e-2

VQSLOD
type: SiteQuality
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MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.477e0

ReadPosRankSum
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SIO_000300: 2.11e-1

QD
type: SiteQuality
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BaseQRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 2
allele frequency: 2.946375957572186e-4
allele num: 6788
num of homozygotes: 0

African
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allele count: 0
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South Asian
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allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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Latino
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Other
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allele frequency: 0.0e0
allele num: 602
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
type: SiteQuality
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FS
type: SiteQuality
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QD
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ReadPosRankSum
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DP
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ClippingRankSum
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MQRankSum
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VQSLOD
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BaseQRankSum
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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European (Finnish)
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African
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South Asian
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Other
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East Asian
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QD
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MQRankSum
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ReadPosRankSum
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FS
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DP
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ClippingRankSum
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MQ
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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African
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Other
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Latino
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allele frequency: 6.259780907668231e-4
allele num: 6390
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European (Finnish)
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South Asian
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allele frequency: 8.971828458639871e-5
allele num: 11146
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QD
type: SiteQuality
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FS
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BaseQRankSum
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VQSLOD
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InbreedingCoeff
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ClippingRankSum
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DP
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MQ
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ReadPosRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1294

GenotypeQuality
all individuals: 2160
bin: 6.75e1
variant carriers: 451

Other
type: Population
allele count: 87
allele frequency: 1.74e-1
allele num: 500
num of homozygotes: 2

African
type: Population
allele count: 285
allele frequency: 3.742121848739496e-2
allele num: 7616
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 6622
allele frequency: 1.946273218904303e-1
allele num: 34024
num of homozygotes: 132

European (Finnish)
type: Population
allele count: 563
allele frequency: 1.540777230432403e-1
allele num: 3654
num of homozygotes: 4

East Asian
type: Population
allele count: 516
allele frequency: 9.46441672780631e-2
allele num: 5452
num of homozygotes: 10

South Asian
type: Population
allele count: 1518
allele frequency: 1.361923560021532e-1
allele num: 11146
num of homozygotes: 125

Latino
type: Population
allele count: 1034
allele frequency: 1.618153364632238e-1
allele num: 6390
num of homozygotes: 4

VQSLOD
type: SiteQuality
SIO_000300: -1.361e0

MQ
type: SiteQuality
SIO_000300: 3.933e1

FS
type: SiteQuality
SIO_000300: 3.0294e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.273e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

DP
type: SiteQuality
SIO_000300: 1.788749e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.317e0

QD
type: SiteQuality
SIO_000300: 2.62e0

GenotypeQuality
all individuals: 1921
bin: 3.75e1
variant carriers: 7

GenotypeQuality
all individuals: 999
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 3805
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 494
bin: 8.75e1
variant carriers: 10

GenotypeQuality
all individuals: 2251
bin: 2.75e1
variant carriers: 6

GenotypeQuality
all individuals: 793
bin: 8.25e1
variant carriers: 9

GenotypeQuality
all individuals: 3163
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 1725
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 10702
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 1006
bin: 7.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1558
bin: 4.75e1
variant carriers: 6

GenotypeQuality
all individuals: 4670
bin: 2.25e1
variant carriers: 5

GenotypeQuality
all individuals: 10408
bin: 2.5e0
variant carriers: 3

GenotypeQuality
all individuals: 2890
bin: 1.25e1
variant carriers: 9

GenotypeQuality
all individuals: 1445
bin: 5.75e1
variant carriers: 3

GenotypeQuality
all individuals: 2160
bin: 6.75e1
variant carriers: 6

GenotypeQuality
all individuals: 3953
bin: 9.75e1
variant carriers: 658

GenotypeQuality
all individuals: 1530
bin: 5.25e1
variant carriers: 5

African
type: Population
allele count: 699
allele frequency: 9.178046218487394e-2
allele num: 7616
num of homozygotes: 1

Latino
type: Population
allele count: 49
allele frequency: 7.668231611893584e-3
allele num: 6390
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 8
allele frequency: 2.351281448389372e-4
allele num: 34024
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3654
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 6.0e-3
allele num: 500
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5452
num of homozygotes: 0

South Asian
type: Population
allele count: 6
allele frequency: 5.383097075183922e-4
allele num: 11146
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.62e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.56e-1

FS
type: SiteQuality
SIO_000300: 3.0294e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.64e-1

DP
type: SiteQuality
SIO_000300: 1.788749e6

MQ
type: SiteQuality
SIO_000300: 3.933e1

MQRankSum
type: SiteQuality
SIO_000300: -3.317e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.273e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.361e0

GenotypeQuality
all individuals: 917
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1521
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1828
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8902
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 139
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4725
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2892
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.36518771331058e-4
allele num: 14650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.643128550468379e-5
allele num: 53162
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

DP
type: SiteQuality
SIO_000300: 1.632657e6

FS
type: SiteQuality
SIO_000300: 2.744e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.051e0

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

MQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.25e-1

QD
type: SiteQuality
SIO_000300: 8.67e0

MQ
type: SiteQuality
SIO_000300: 4.16e1

GenotypeQuality
all individuals: 2892
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 915
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 364
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 980
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1008
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2399
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 873
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4725
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 139
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1551
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18640
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2054
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8902
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1828
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1643
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.881042850156126e-5
allele num: 53162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5698
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9116
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14650
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10144
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.051e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 7.04e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.63e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.7e-3

DP
type: SiteQuality
SIO_000300: 1.632657e6

FS
type: SiteQuality
SIO_000300: 2.744e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.45e-1

QD
type: SiteQuality
SIO_000300: 8.67e0

MQ
type: SiteQuality
SIO_000300: 4.16e1

GenotypeQuality
all individuals: 117
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1199
bin: 4.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1118
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1301
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5364
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 420
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 592
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1823
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 758
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 924
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2095
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1565
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2416
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20408
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6125
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8859
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 53848
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.98373338623289e-4
allele num: 10082
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7608
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 722
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.090988435522584e-4
allele num: 9166
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5764
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14718
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.694e0

MQRankSum
type: SiteQuality
SIO_000300: -2.295e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.4e-1

MQ
type: SiteQuality
SIO_000300: 4.047e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

DP
type: SiteQuality
SIO_000300: 1.654407e6

FS
type: SiteQuality
SIO_000300: 1.944e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.47e-1

QD
type: SiteQuality
SIO_000300: 1.76e0

GenotypeQuality
all individuals: 1332
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21568
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 135
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variant carriers: 0

GenotypeQuality
all individuals: 2434
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5868
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variant carriers: 0

GenotypeQuality
all individuals: 6305
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variant carriers: 0

GenotypeQuality
all individuals: 381
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variant carriers: 0

GenotypeQuality
all individuals: 2135
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GenotypeQuality
all individuals: 1097
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variant carriers: 0

GenotypeQuality
all individuals: 329
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variant carriers: 0

GenotypeQuality
all individuals: 77
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GenotypeQuality
all individuals: 1317
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GenotypeQuality
all individuals: 2487
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variant carriers: 0

GenotypeQuality
all individuals: 241
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 800
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 948
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1873
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8932
bin: 9.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5812
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9222
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.298701298701299e-4
allele num: 7700
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14794
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 726
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54306
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.98e-1

FS
type: SiteQuality
SIO_000300: 3.621e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.559e0

MQRankSum
type: SiteQuality
SIO_000300: -7.81e-1

DP
type: SiteQuality
SIO_000300: 1.667846e6

VQSLOD
type: SiteQuality
SIO_000300: -2.533e0

MQ
type: SiteQuality
SIO_000300: 4.224e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.55e-1

QD
type: SiteQuality
SIO_000300: 2.14e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-3

GenotypeQuality
all individuals: 1320
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1881
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variant carriers: 0

GenotypeQuality
all individuals: 1418
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2143
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2496
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variant carriers: 0

GenotypeQuality
all individuals: 82
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variant carriers: 0

GenotypeQuality
all individuals: 1068
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variant carriers: 0

GenotypeQuality
all individuals: 2308
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GenotypeQuality
all individuals: 379
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variant carriers: 0

GenotypeQuality
all individuals: 21545
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 263
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variant carriers: 0

GenotypeQuality
all individuals: 403
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variant carriers: 0

GenotypeQuality
all individuals: 1260
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8934
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 5967
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 954
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 530
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 732
bin: 4.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14836
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9236
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 734
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 54456
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.892060197197717e-4
allele num: 7708
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10342
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5820
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.937e1

VQSLOD
type: SiteQuality
SIO_000300: -3.258e0

FS
type: SiteQuality
SIO_000300: 2.431e0

MQRankSum
type: SiteQuality
SIO_000300: 2.15e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.192e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.199999999999999e-2

DP
type: SiteQuality
SIO_000300: 1.672846e6

QD
type: SiteQuality
SIO_000300: 3.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.7e-3

GenotypeQuality
all individuals: 224
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 998
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 129
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1964
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variant carriers: 2

GenotypeQuality
all individuals: 1286
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variant carriers: 3

GenotypeQuality
all individuals: 1045
bin: 3.75e1
variant carriers: 3

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 494
bin: 4.75e1
variant carriers: 2

GenotypeQuality
all individuals: 401
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variant carriers: 0

GenotypeQuality
all individuals: 1909
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variant carriers: 1

GenotypeQuality
all individuals: 2528
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 260
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2199
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 141
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 8938
bin: 9.75e1
variant carriers: 10

GenotypeQuality
all individuals: 962
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variant carriers: 1

GenotypeQuality
all individuals: 1322
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 22740
bin: 6.25e1
variant carriers: 1

East Asian
type: Population
allele count: 2
allele frequency: 2.576655501159495e-4
allele num: 7762
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 16
allele frequency: 2.911102216076562e-4
allele num: 54962
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.330879168471199e-4
allele num: 9236
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5862
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.340482573726542e-3
allele num: 746
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.675227394328518e-4
allele num: 14952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10402
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.09e-1

MQ
type: SiteQuality
SIO_000300: 3.5e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.17e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.67e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.231e0

QD
type: SiteQuality
SIO_000300: 2.57e0

FS
type: SiteQuality
SIO_000300: 1.425e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.4e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.166e0

DP
type: SiteQuality
SIO_000300: 1.690397e6

GenotypeQuality
all individuals: 1683
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 1
allele frequency: 9.525623928367309e-5
allele num: 10498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5910
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7826
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 55586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9294
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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SIO_000300: -6.388e0

ReadPosRankSum
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SIO_000300: 3.51e0

FS
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MQ
type: SiteQuality
SIO_000300: 3.81e1

MQRankSum
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SIO_000300: 3.33e0

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -4.56e-1

BaseQRankSum
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SIO_000300: 1.46e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.2e-3

DP
type: SiteQuality
SIO_000300: 1.706336e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15278
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7924
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9336
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 770
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.773049645390071e-5
allele num: 56400
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.671122994652406e-4
allele num: 5984
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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MQRankSum
type: SiteQuality
SIO_000300: -1.185e0

BaseQRankSum
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SIO_000300: -9.409999999999999e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.92e-1

DP
type: SiteQuality
SIO_000300: 1.724301e6

MQ
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SIO_000300: 3.324e1

VQSLOD
type: SiteQuality
SIO_000300: -4.498e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.32e-1

FS
type: SiteQuality
SIO_000300: 9.350000000000001e-1

QD
type: SiteQuality
SIO_000300: 6.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.3e-3

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6110
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 2.560819462227913e-3
allele num: 9372
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.265822784810127e-3
allele num: 790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.452442603141723e-5
allele num: 57930
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.48015873015873e-4
allele num: 8064
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.444129398118315e-5
allele num: 15518
num of homozygotes: 0

Latino
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allele count: 2
allele frequency: 1.855287569573284e-4
allele num: 10780
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ClippingRankSum
type: SiteQuality
SIO_000300: -1.87e-1

DP
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SIO_000300: 1.750915e6

MQ
type: SiteQuality
SIO_000300: 3.995e1

VQSLOD
type: SiteQuality
SIO_000300: -1.808e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.9e-3

QD
type: SiteQuality
SIO_000300: 2.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 6.12e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.03e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1348
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GenotypeQuality
all individuals: 7085
bin: 6.75e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.264406151565684e-5
allele num: 10794
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 790
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
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MQ
type: SiteQuality
SIO_000300: 3.881e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.62e-1

QD
type: SiteQuality
SIO_000300: 3.36e0

VQSLOD
type: SiteQuality
SIO_000300: -3.589e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.0e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.402e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.9e-3

FS
type: SiteQuality
SIO_000300: 8.872999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

DP
type: SiteQuality
SIO_000300: 1.749258e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15532
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10794
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8070
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6116
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.067691650651292e-4
allele num: 9366
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

InbreedingCoeff
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QD
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FS
type: SiteQuality
SIO_000300: 8.872999999999999e0

MQRankSum
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ClippingRankSum
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SIO_000300: -2.62e-1

MQ
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SIO_000300: 3.881e1

ReadPosRankSum
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VQSLOD
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DP
type: SiteQuality
SIO_000300: 1.749258e6

BaseQRankSum
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SIO_000300: -2.402e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.282873636946761e-4
allele num: 15590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.713208840157615e-5
allele num: 58370
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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East Asian
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allele count: 0
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InbreedingCoeff
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ReadPosRankSum
type: SiteQuality
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MQRankSum
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ClippingRankSum
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QD
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 3.716e1

FS
type: SiteQuality
SIO_000300: 7.31e0

VQSLOD
type: SiteQuality
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DP
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SIO_000300: 1.751195e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
type: Population
allele count: 16
allele frequency: 1.718213058419244e-3
allele num: 9312
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 4
allele frequency: 6.850957421299626e-5
allele num: 58386
num of homozygotes: 0

East Asian
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allele count: 5
allele frequency: 6.162188809465122e-4
allele num: 8114
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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DP
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MQRankSum
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ClippingRankSum
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BaseQRankSum
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MQ
type: SiteQuality
SIO_000300: 3.798e1

FS
type: SiteQuality
SIO_000300: 1.478e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 796
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9312
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.712739355324907e-5
allele num: 58386
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8114
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15594
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.798e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.94e-1

MQRankSum
type: SiteQuality
SIO_000300: -1.124e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.9e-1

FS
type: SiteQuality
SIO_000300: 1.478e0

VQSLOD
type: SiteQuality
SIO_000300: -2.259e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.7e-1

DP
type: SiteQuality
SIO_000300: 1.752123e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 6.4e-3

QD
type: SiteQuality
SIO_000300: 1.44e0

GenotypeQuality
all individuals: 2790
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1006
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2398
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24579
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9010
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 4750
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 182
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7083
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1381
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.707825255319876e-5
allele num: 58554
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.083423618634886e-4
allele num: 9230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.879e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

FS
type: SiteQuality
SIO_000300: 3.774e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -2.176e0

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

VQSLOD
type: SiteQuality
SIO_000300: -2.849e0

QD
type: SiteQuality
SIO_000300: 1.46e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 1.748041e6

GenotypeQuality
all individuals: 1381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 519
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1475
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7083
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 522
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 223
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1006
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 156
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4750
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 734
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24579
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2790
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 447
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9010
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2025
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8118
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10852
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6194
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.707825255319876e-5
allele num: 58554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15642
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.774e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.176e0

VQSLOD
type: SiteQuality
SIO_000300: -2.849e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 1.79e0

DP
type: SiteQuality
SIO_000300: 1.748041e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.07e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e0

MQ
type: SiteQuality
SIO_000300: 3.879e1

QD
type: SiteQuality
SIO_000300: 1.46e0

GenotypeQuality
all individuals: 969
bin: 8.25e1
variant carriers: 478

GenotypeQuality
all individuals: 1428
bin: 1.75e1
variant carriers: 558

GenotypeQuality
all individuals: 13735
bin: 9.75e1
variant carriers: 12778

GenotypeQuality
all individuals: 5060
bin: 2.5e0
variant carriers: 403

GenotypeQuality
all individuals: 2285
bin: 7.5e0
variant carriers: 507

GenotypeQuality
all individuals: 1443
bin: 7.75e1
variant carriers: 566

GenotypeQuality
all individuals: 1340
bin: 3.75e1
variant carriers: 664

GenotypeQuality
all individuals: 672
bin: 8.75e1
variant carriers: 494

GenotypeQuality
all individuals: 1497
bin: 1.25e1
variant carriers: 553

GenotypeQuality
all individuals: 4036
bin: 2.25e1
variant carriers: 603

GenotypeQuality
all individuals: 1430
bin: 3.25e1
variant carriers: 612

GenotypeQuality
all individuals: 1135
bin: 4.75e1
variant carriers: 572

GenotypeQuality
all individuals: 1485
bin: 7.25e1
variant carriers: 518

GenotypeQuality
all individuals: 686
bin: 9.25e1
variant carriers: 456

GenotypeQuality
all individuals: 1150
bin: 5.75e1
variant carriers: 644

GenotypeQuality
all individuals: 1607
bin: 2.75e1
variant carriers: 632

Other
type: Population
allele count: 179
allele frequency: 2.405913978494624e-1
allele num: 744
num of homozygotes: 0

Latino
type: Population
allele count: 2234
allele frequency: 2.445271453590193e-1
allele num: 9136
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 11347
allele frequency: 2.231465093411996e-1
allele num: 50850
num of homozygotes: 22

South Asian
type: Population
allele count: 2383
allele frequency: 1.723813657407407e-1
allele num: 13824
num of homozygotes: 12

European (Finnish)
type: Population
allele count: 1262
allele frequency: 2.343982169390788e-1
allele num: 5384
num of homozygotes: 2

African
type: Population
allele count: 3030
allele frequency: 3.600285171102662e-1
allele num: 8416
num of homozygotes: 61

East Asian
type: Population
allele count: 536
allele frequency: 7.39514348785872e-2
allele num: 7248
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.13e0

MQRankSum
type: SiteQuality
SIO_000300: -1.39e0

QD
type: SiteQuality
SIO_000300: 4.44e0

VQSLOD
type: SiteQuality
SIO_000300: 1.573e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.565e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.34e-1

FS
type: SiteQuality
SIO_000300: 1.995e0

DP
type: SiteQuality
SIO_000300: 2.174977e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.633e0

MQ
type: SiteQuality
SIO_000300: 3.263e1

GenotypeQuality
all individuals: 146
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1396
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 106
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 599
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 97
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 289
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 421
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2554
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9446
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2592
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28065
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2637
bin: 9.75e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8180
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8962
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.377123366316571e-5
allele num: 59222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15768
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10914
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6280
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.44e0

DP
type: SiteQuality
SIO_000300: 1.678927e6

FS
type: SiteQuality
SIO_000300: 5.977e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

QD
type: SiteQuality
SIO_000300: 1.83e0

MQ
type: SiteQuality
SIO_000300: 3.578e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.883e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

VQSLOD
type: SiteQuality
SIO_000300: -3.644e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.17e0

GenotypeQuality
all individuals: 285
bin: 3.75e1
variant carriers: 8

GenotypeQuality
all individuals: 1829
bin: 7.5e0
variant carriers: 4

GenotypeQuality
all individuals: 9296
bin: 6.75e1
variant carriers: 9

GenotypeQuality
all individuals: 8106
bin: 2.25e1
variant carriers: 12

GenotypeQuality
all individuals: 27109
bin: 6.25e1
variant carriers: 15

GenotypeQuality
all individuals: 409
bin: 8.75e1
variant carriers: 11

GenotypeQuality
all individuals: 163
bin: 4.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1341
bin: 2.75e1
variant carriers: 7

GenotypeQuality
all individuals: 169
bin: 1.75e1
variant carriers: 9

GenotypeQuality
all individuals: 166
bin: 1.25e1
variant carriers: 4

GenotypeQuality
all individuals: 102
bin: 4.25e1
variant carriers: 11

GenotypeQuality
all individuals: 210
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 2853
bin: 9.75e1
variant carriers: 514

GenotypeQuality
all individuals: 560
bin: 9.25e1
variant carriers: 14

GenotypeQuality
all individuals: 1312
bin: 8.25e1
variant carriers: 13

GenotypeQuality
all individuals: 194
bin: 5.25e1
variant carriers: 9

South Asian
type: Population
allele count: 20
allele frequency: 1.273074474856779e-3
allele num: 15710
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.667481662591687e-3
allele num: 818
num of homozygotes: 0

East Asian
type: Population
allele count: 426
allele frequency: 5.303784860557769e-2
allele num: 8032
num of homozygotes: 0

Latino
type: Population
allele count: 225
allele frequency: 2.078713968957871e-2
allele num: 10824
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.697965836927361e-4
allele num: 58894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6246
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8904
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.17e0

VQSLOD
type: SiteQuality
SIO_000300: -4.229e0

FS
type: SiteQuality
SIO_000300: 6.681e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.008e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.7e-3

MQ
type: SiteQuality
SIO_000300: 3.487e1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.88e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.56e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.3e-2

DP
type: SiteQuality
SIO_000300: 1.67805e6

GenotypeQuality
all individuals: 161
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9412
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 152
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 552
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2423
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2475
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1939
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 299
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2484
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 998
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8669
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 79
bin: 4.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58638
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8100
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 814
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.389776357827476e-5
allele num: 15650
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

QD
type: SiteQuality
SIO_000300: 9.359999999999999e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

FS
type: SiteQuality
SIO_000300: 8.08e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.84e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.756e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.83e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

DP
type: SiteQuality
SIO_000300: 1.649566e6

MQ
type: SiteQuality
SIO_000300: 3.088e1

GenotypeQuality
all individuals: 121
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 423
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 296
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 9923
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2401
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1265
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 113
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1932
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8980
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24555
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 544
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1445
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2410
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 3
allele frequency: 1.934485426876451e-4
allele num: 15508
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8784
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10704
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.723900151703213e-5
allele num: 58008
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8038
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.1e-3

FS
type: SiteQuality
SIO_000300: 6.609e0

QD
type: SiteQuality
SIO_000300: 5.44e0

MQRankSum
type: SiteQuality
SIO_000300: -5.79e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.500000000000001e-2

MQ
type: SiteQuality
SIO_000300: 3.172e1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.4e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.32e0