7-143956045-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956045
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956045
    reference: chr 7
allele count: 3
allele frequency: 2.473859550747106e-5
allele num: 121268
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4256A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7342A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.677A>G
  hgvsp: ENSP00000420502.1:p.Gln226Arg
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35166A>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4256A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7342A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21520T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6460A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7342A>G
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38041
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 782
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 109
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3670
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16591
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Gln226Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: BaseQRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ

7-143956046-GAA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956046
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956044
    reference: chr 7
allele count: 4
allele frequency: 3.299023489047242e-5
allele num: 121248
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21518_494-21517delAA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7345_371-7344delTT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4259_158-4258delTT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4259_161-4258delTT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7345_113-7344delTT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35163_-13+35164delTT
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.674_675delTT
  hgvsp: ENSP00000420502.1:p.Leu225ProfsTer56
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6463_264-6462delTT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7345_579-7344delTT
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38022
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 482
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 786
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3669
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16559
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52348
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Leu225ProfsTer56
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
population: African
reference allele: GAA
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-143956052-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956052
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956052
    reference: chr 7
allele count: 1
allele frequency: 8.254366559910193e-6
allele num: 121148
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21513T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7349A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.670A>G
  hgvsp: ENSP00000420502.1:p.Ile224Val
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6467A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4263A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4263A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7349A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35159A>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7349A>G
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 263
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 788
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16547
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37853
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3663
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ile224Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/7-143956055-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956055
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956055
    reference: chr 7
allele count: 5
allele frequency: 4.129569368506252e-5
allele num: 121078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7352G>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6470G>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7352G>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21510C>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7352G>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35156G>T
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4266G>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.667G>T
  hgvsp: ENSP00000420502.1:p.Ala223Ser
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4266G>T
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 763
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 945
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ala223Ser
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQ

7-143956055-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956055
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956055
    reference: chr 7
allele count: 2
allele frequency: 1.651827747402501e-5
allele num: 121078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4266G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35156G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.667G>A
  hgvsp: ENSP00000420502.1:p.Ala223Thr
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7352G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7352G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6470G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4266G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21510C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7352G>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16566
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37787
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 478
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3656
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52125
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5029
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala223Thr
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ

http://identifiers.org/exac.variant/7-143956056-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956056
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956056
    reference: chr 7
allele count: 1
allele frequency: 8.260503229856763e-6
allele num: 121058
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4267T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35155T>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7353T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7353T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.666T>G
  hgvsp: ENSP00000420502.1:p.Cys222Trp
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6471T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7353T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21509A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4267T>G
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37768
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16564
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 946
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5030
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52102
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Cys222Trp
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: A
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum

7-143956057-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956057
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956057
    reference: chr 7
allele count: 1
allele frequency: 8.265692417053776e-6
allele num: 120982
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21508C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7354G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.665G>C
  hgvsp: ENSP00000420502.1:p.Cys222Ser
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7354G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6472G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7354G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35154G>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4268G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4268G>C
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16546
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 772
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37696
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 474
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 275
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Cys222Ser
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: Other
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: QD

7-143956058-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956058
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956058
    reference: chr 7
allele count: 34
allele frequency: 2.810288963829928e-4
allele num: 120984
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7355T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7355T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7355T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35153T>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.664T>A
  hgvsp: ENSP00000420502.1:p.Cys222Ser
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6473T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4269T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21507A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4269T>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37693
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 473
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16544
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3642
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 9.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 52026
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 760
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Cys222Ser
num of homozygotes: 0
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-143956062-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956062
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956062
    reference: chr 7
allele count: 11
allele frequency: 9.10852392229601e-5
allele num: 120766
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4273C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21503G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7359C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.660C>T
  hgvsp: ENST00000493325.1:c.660C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4273C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35149C>T
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7359C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6477C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7359C>T
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37537
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 761
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 475
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16471
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 406
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 252
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 273
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51767
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 949
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Ile220Ile
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
reference allele: G
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

7-143956064-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956064
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956064
    reference: chr 7
allele count: 1
allele frequency: 8.316284949187499e-6
allele num: 120246
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7361A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7361A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4275A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6479A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7361A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.658A>G
  hgvsp: ENSP00000420502.1:p.Ile220Val
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21501T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4275A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35147A>G
  variant of: http://identifiers.org/hgnc/33846
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 277
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 771
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16286
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 251
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51082
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Ile220Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: European (Finnish)
population: Latino
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP

7-143956311-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956311
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956311
    reference: chr 7
allele count: 1
allele frequency: 1.835535976505139e-4
allele num: 5448
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4522G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.411G>C
  hgvsp: ENSP00000420502.1:p.Trp137Cys
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7608G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4522G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7608G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7608G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6726G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34900G>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21254C>G
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1701
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 302
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 30655
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8237
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 91
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28171
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2989
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Trp137Cys
num of homozygotes: 0
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: Latino
population: African
reference allele: C
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: ReadPosRankSum

7-143956069-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956069
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956069
    reference: chr 7
allele count: 2
allele frequency: 1.671402306535183e-5
allele num: 119660
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.653T>C
  hgvsp: ENSP00000420502.1:p.Met218Thr
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7366T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4280T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6484T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7366T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4280T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7366T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35142T>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21496A>G
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3568
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 467
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16052
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 743
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1055
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36648
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50407
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4879
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 922
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Met218Thr
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: Latino
population: East Asian
population: Other
population: African
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

7-143956071-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956071
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956071
    reference: chr 7
allele count: 116
allele frequency: 9.771218706829746e-4
allele num: 118716
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7368T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21494A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4282T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4282T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35140T>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.651T>C
  hgvsp: ENST00000493325.1:c.651T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7368T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6486T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7368T>C
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 824
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 796
  bin: 3.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 35481
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 5.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1875
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3462
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 483
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15472
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 9.75e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 790
  bin: 9.75e1
  variant carriers: 108
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 865
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Tyr217Tyr
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

7-143956072-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956072
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956072
    reference: chr 7
allele count: 1
allele frequency: 8.423180592991915e-6
allele num: 118720
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7369A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21493T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6487A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7369A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4283A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35139A>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.650A>G
  hgvsp: ENSP00000420502.1:p.Tyr217Cys
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4283A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7369A>G
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 480
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 817
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 101
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1877
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 795
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35493
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15517
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3489
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 258
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49077
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Tyr217Cys
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

7-143956074-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956074
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956074
    reference: chr 7
allele count: 1
allele frequency: 8.471991595784337e-6
allele num: 118036
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7371A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4285A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21491T>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.648A>T
  hgvsp: ENST00000493325.1:c.648A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7371A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4285A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7371A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6489A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35137A>T
  variant of: http://identifiers.org/hgnc/33846
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34569
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47479
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3038
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ser216Ser
num of homozygotes: 0
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff

7-143956074-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956074
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956074
    reference: chr 7
allele count: 34
allele frequency: 2.880477142566675e-4
allele num: 118036
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7371A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7371A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7371A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21491T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35137A>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6489A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.648A>G
  hgvsp: ENST00000493325.1:c.648A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4285A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4285A>G
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14914
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 4.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3373
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1550
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2568
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34569
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1584
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 739
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 9.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 872
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 9.75e1
  variant carriers: 32
genotype quality: GenotypeQuality
  all individuals: 4326
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 666
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Ser216Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-143956075-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956075
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956074
    reference: chr 7
allele count: 1
allele frequency: 8.504558443325623e-6
allele num: 117584
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4287delT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7373delT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21487delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35135delT
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6491delT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.646delT
  hgvsp: ENSP00000420502.1:p.Ser216HisfsTer31
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7373delT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7373delT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4287delT
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 33924
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14555
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2879
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1740
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 662
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 251
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Ser216HisfsTer31
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: African
population: East Asian
population: Other
reference allele: GA
site quality: QD
site quality: ReadPosRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum

7-143956076-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956076
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956076
    reference: chr 7
allele count: 1
allele frequency: 8.550955141689327e-6
allele num: 116946
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.646T>A
  hgvsp: ENSP00000420502.1:p.Ser216Thr
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4287T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6491T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35135T>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4287T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7373T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21489A>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7373T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7373T>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3242
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32832
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1987
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 411
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14109
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3280
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ser216Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum

7-143956079-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956079
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956079
    reference: chr 7
allele count: 2
allele frequency: 1.714031058242775e-5
allele num: 116684
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7376G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35132G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6494G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.643G>A
  hgvsp: ENSP00000420502.1:p.Val215Ile
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7376G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21486C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7376G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4290G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4290G>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32758
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3150
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2117
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14099
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3386
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3298
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 802
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 113
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1249
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 687
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3631
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val215Ile
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
reference allele: C
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD

7-143956080-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956080
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956080
    reference: chr 7
allele count: 2
allele frequency: 1.715089356155456e-5
allele num: 116612
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4291A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.642A>T
  hgvsp: ENST00000493325.1:c.642A>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7377A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35131A>T
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6495A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21485T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4291A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7377A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7377A>T
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3268
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2177
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3166
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3419
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32850
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 643
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14092
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 768
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 695
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3861
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3690
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Val214Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS

7-143956082-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956082
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956082
    reference: chr 7
allele count: 1
allele frequency: 8.61000137760022e-6
allele num: 116144
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6497G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.640G>A
  hgvsp: ENSP00000420502.1:p.Val214Ile
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7379G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7379G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7379G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4293G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35129G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21483C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4293G>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 196
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3147
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2368
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13989
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 504
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3249
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32899
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 596
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 174
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3805
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 246
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val214Ile
num of homozygotes: 0
population: African
population: Latino
population: South Asian
population: Other
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP

7-143956084-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956084
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956084
    reference: chr 7
allele count: 5
allele frequency: 4.304630060092635e-5
allele num: 116154
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4295T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7381T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6499T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35127T>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21481A>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.638T>C
  hgvsp: ENSP00000420502.1:p.Ile213Thr
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4295T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7381T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7381T>C
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2900
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33364
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2413
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13904
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 48
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1166
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1379
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1291
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ile213Thr
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: East Asian
population: European (Finnish)
reference allele: A
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: ClippingRankSum

7-143956089-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956089
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956089
    reference: chr 7
allele count: 1
allele frequency: 8.646928610957387e-6
allele num: 115648
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4300C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7386C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.633C>T
  hgvsp: ENST00000493325.1:c.633C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7386C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6504C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4300C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35122C>T
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21476G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7386C>T
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 169
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2812
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3564
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2612
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33455
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3329
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13584
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43278
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1279
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 754
  bin: 7.25e1
  variant carriers: 0
hgvs: p.Ser211Ser
num of homozygotes: 0
population: East Asian
population: South Asian
population: Other
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: QD

7-143956092-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956092
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956092
    reference: chr 7
allele count: 771
allele frequency: 6.693521782161027e-3
allele num: 115186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4303G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.630G>A
  hgvsp: ENST00000493325.1:c.630G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35119G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7389G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7389G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21473C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4303G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6507G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7389G>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 1.25e1
  variant carriers: 59
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 4.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 3492
  bin: 1.75e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 33038
  bin: 2.25e1
  variant carriers: 90
genotype depth: GenotypeDepth
  all individuals: 2773
  bin: 7.5e0
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 6.25e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 7.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.25e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 5.25e1
  variant carriers: 34
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 9.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 6.75e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 4.75e1
  variant carriers: 36
genotype depth: GenotypeDepth
  all individuals: 13494
  bin: 2.75e1
  variant carriers: 80
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 8.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 440
  bin: 3.75e1
  variant carriers: 76
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 9.75e1
  variant carriers: 68
genotype depth: GenotypeDepth
  all individuals: 2830
  bin: 3.25e1
  variant carriers: 83
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 5.75e1
  variant carriers: 28
genotype quality: GenotypeQuality
  all individuals: 493
  bin: 5.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 1189
  bin: 3.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 2.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 4318
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 107
  bin: 9.25e1
  variant carriers: 11
hgvs: p.Leu210Leu
num of homozygotes: 7
population: Latino
population: European (Finnish)
population: African
population: East Asian
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: C
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum

7-143956098-TCC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956098
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956096
    reference: chr 7
allele count: 1
allele frequency: 8.727678961057096e-6
allele num: 114578
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6515_264-6514delGG
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35111_-13+35112delGG
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7397_113-7396delGG
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.622_623delGG
  hgvsp: ENSP00000420502.1:p.Gly208ThrfsTer73
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7397_579-7396delGG
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4311_158-4310delGG
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21465_494-21464delCC
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7397_371-7396delGG
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4311_161-4310delGG
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 250
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3051
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3111
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 360
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3604
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33049
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2779
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13756
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1005
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 632
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 733
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly208ThrfsTer73
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: TCC
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum

7-143956105-AG-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956105
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956104
    reference: chr 7
allele count: 1
allele frequency: 8.75871492134674e-6
allele num: 114172
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35105delC
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4317delC
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.616delC
  hgvsp: ENSP00000420502.1:p.Leu206TrpfsTer9
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7403delC
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4317delC
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6521delC
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7403delC
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7403delC
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21459delG
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3549
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13973
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2317
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33510
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2720
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 122
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3778
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1012
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44170
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Leu206TrpfsTer9
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: Other
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: AG
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: DP

7-143956120-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956120
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956120
    reference: chr 7
allele count: 1
allele frequency: 8.917106577257812e-6
allele num: 112144
alternate allele: T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7417G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  clinical significance: not_provided
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.602G>A
  hgvsp: ENSP00000420502.1:p.Gly201Glu
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6535G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7417G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4331G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4331G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35091G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21445C>T
annotation: Annotation
  canonical: false
  clinical significance: not_provided
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7417G>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1691
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2743
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13959
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32970
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4007
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3759
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6096
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42986
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 917
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Gly201Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
reference allele: C
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum

7-143956121-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956121
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956121
    reference: chr 7
allele count: 2
allele frequency: 1.784598911394664e-5
allele num: 112070
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7418G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4332G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7418G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35090G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7418G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6536G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21444C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4332G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.601G>A
  hgvsp: ENSP00000420502.1:p.Gly201Arg
  variant of: http://identifiers.org/hgnc/8234
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 57
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1654
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32957
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3737
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4019
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14000
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 579
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3732
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Gly201Arg
num of homozygotes: 0
population: Other
population: South Asian
population: East Asian
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP

7-143956122-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956122
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956122
    reference: chr 7
allele count: 7
allele frequency: 6.247322576038841e-5
allele num: 112048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35089C>T
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.600C>T
  hgvsp: ENST00000493325.1:c.600C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6537C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7419C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7419C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4333C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21443G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4333C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7419C>T
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2721
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1592
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3725
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32981
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14060
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3722
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 628
  bin: 9.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 494
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6163
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43438
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 509
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ala200Ala
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum

7-143956130-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956130
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956130
    reference: chr 7
allele count: 1
allele frequency: 9.007710600273834e-6
allele num: 111016
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35081G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6545G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21435C>T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.592G>A
  hgvsp: ENSP00000420502.1:p.Val198Ile
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7427G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4341G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7427G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7427G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4341G>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4418
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13996
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3802
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2649
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1453
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3728
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 466
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 795
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Val198Ile
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: Other
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum

7-143956134-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956134
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956134
    reference: chr 7
allele count: 1
allele frequency: 9.049773755656109e-6
allele num: 110500
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7431C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35077C>T
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7431C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4345C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6549C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7431C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21431G>A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.588C>T
  hgvsp: ENST00000493325.1:c.588C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4345C>T
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 13927
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2647
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32475
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3854
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1378
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4581
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 325
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6977
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 565
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 541
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 741
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Asn196Asn
num of homozygotes: 0
population: Other
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

7-143956135-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956135
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956135
    reference: chr 7
allele count: 3
allele frequency: 2.719016803523846e-5
allele num: 110334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4346A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6550A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.587A>G
  hgvsp: ENSP00000420502.1:p.Asn196Ser
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21430T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35076A>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4346A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7432A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7432A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7432A>G
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32410
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13901
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2633
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4656
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42767
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 243
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 727
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 560
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 729
  bin: 2.75e1
  variant carriers: 1
hgvs: p.Asn196Ser
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

7-143956138-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956138
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956138
    reference: chr 7
allele count: 2
allele frequency: 1.817620008361052e-5
allele num: 110034
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7435A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6553A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4349A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.584A>G
  hgvsp: ENSP00000420502.1:p.Glu195Gly
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4349A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7435A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21427T>C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35073A>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7435A>G
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 32370
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3885
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 760
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1285
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4746
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2652
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13863
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 810
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 227
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Glu195Gly
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: South Asian
reference allele: T
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum

7-143956140-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956140
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956140
    reference: chr 7
allele count: 1
allele frequency: 9.111119209883743e-6
allele num: 109756
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6555T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21425A>G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.582T>C
  hgvsp: ENST00000493325.1:c.582T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4351T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4351T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7437T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7437T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7437T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35071T>C
  variant of: http://identifiers.org/hgnc/33846
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 13793
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 319
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32251
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1268
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4853
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2643
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 840
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 206
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 711
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 336
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 483
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Asn194Asn
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

7-143956144-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956144
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956144
    reference: chr 7
allele count: 16
allele frequency: 1.466813348001467e-4
allele num: 109080
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4355T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.578T>C
  hgvsp: ENSP00000420502.1:p.Ile193Thr
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7441T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7441T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21421A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35067T>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7441T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4355T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6559T>C
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 2621
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 5.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13688
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1216
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31937
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 898
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4093
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5079
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 7.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 195
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 157
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 732
  bin: 3.25e1
  variant carriers: 1
hgvs: p.Ile193Thr
num of homozygotes: 0
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: QD

7-143956145-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956145
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956145
    reference: chr 7
allele count: 1
allele frequency: 9.212344541685859e-6
allele num: 108550
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21420T>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6560A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4356A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7442A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7442A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4356A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7442A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35066A>T
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.577A>T
  hgvsp: ENSP00000420502.1:p.Ile193Phe
  variant of: http://identifiers.org/hgnc/8234
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 980
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4191
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5211
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13636
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2610
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31618
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1282
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7893
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 615
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 240
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Ile193Phe
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: South Asian
population: Latino
population: East Asian
population: European (Finnish)
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: DP
site quality: QD

7-143956149-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956149
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956149
    reference: chr 7
allele count: 1
allele frequency: 9.250351513357507e-6
allele num: 108104
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.573C>T
  hgvsp: ENST00000493325.1:c.573C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35062C>T
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21416G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4360C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7446C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7446C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6564C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7446C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4360C>T
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5328
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31472
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4192
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1200
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1034
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 697
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 424
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 218
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Thr191Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ

7-143956153-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956153
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956153
    reference: chr 7
allele count: 1
allele frequency: 9.312200845547836e-6
allele num: 107386
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7450A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35058A>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6568A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4364A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21412T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7450A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4364A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7450A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.569A>G
  hgvsp: ENSP00000420502.1:p.Asp190Gly
  variant of: http://identifiers.org/hgnc/8234
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1126
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13521
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5631
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31140
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1130
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2593
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4352
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 142
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 312
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 261
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 689
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 704
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 403
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Asp190Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
reference allele: T
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-143956178-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956178
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956178
    reference: chr 7
allele count: 1
allele frequency: 1.023478599062494e-5
allele num: 97706
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6593G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21387C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7475G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.544G>A
  hgvsp: ENSP00000420502.1:p.Ala182Thr
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7475G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7475G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4389G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35033G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4389G>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8701
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2442
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7257
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24712
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12353
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 172
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 860
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2641
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3113
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Ala182Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: East Asian
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: ClippingRankSum

http://identifiers.org/exac.variant/7-143956181-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956181
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956181
    reference: chr 7
allele count: 2714
allele frequency: 2.875548303701977e-2
allele num: 94382
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4392T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35030T>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4392T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21384A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7478T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7478T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7478T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.541T>G
  hgvsp: ENSP00000420502.1:p.Leu181Val
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6596T>G
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 22307
  bin: 2.25e1
  variant carriers: 283
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 3.75e1
  variant carriers: 285
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 4.75e1
  variant carriers: 206
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 5.25e1
  variant carriers: 197
genotype depth: GenotypeDepth
  all individuals: 1328
  bin: 1.75e1
  variant carriers: 198
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 5.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 11631
  bin: 2.75e1
  variant carriers: 295
genotype depth: GenotypeDepth
  all individuals: 103
  bin: 6.75e1
  variant carriers: 77
genotype depth: GenotypeDepth
  all individuals: 7831
  bin: 1.25e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 6.25e1
  variant carriers: 99
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 8.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 9499
  bin: 7.5e0
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 2822
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2432
  bin: 3.25e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 39
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 4.25e1
  variant carriers: 242
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 9.75e1
  variant carriers: 116
genotype quality: GenotypeQuality
  all individuals: 290
  bin: 4.75e1
  variant carriers: 59
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 1.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 973
  bin: 2.75e1
  variant carriers: 40
genotype quality: GenotypeQuality
  all individuals: 397
  bin: 1.75e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 9.25e1
  variant carriers: 77
genotype quality: GenotypeQuality
  all individuals: 837
  bin: 3.25e1
  variant carriers: 39
hgvs: p.Leu181Val
num of homozygotes: 0
population: South Asian
population: East Asian
population: African
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: Other
reference allele: A
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP

http://identifiers.org/exac.variant/7-143956189-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956189
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956188
    reference: chr 7
allele count: 1
allele frequency: 1.1132882080513e-5
allele num: 89824
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4401delT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4401delT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21369delA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35021delT
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6605delT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7487delT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.532delT
  hgvsp: ENSP00000420502.1:p.Cys178ValfsTer37
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7487delT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7487delT
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 20628
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11578
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11008
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 276
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 249
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3834
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30180
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Cys178ValfsTer37
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: CA
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ

http://identifiers.org/exac.variant/7-143956189-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956189
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956190
    reference: chr 7
allele count: 1
allele frequency: 1.1132882080513e-5
allele num: 89824
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35021dupT
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21369dupA
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7487dupT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7487dupT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4401dupT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.532dupT
  hgvsp: ENSP00000420502.1:p.Cys178LeufsTer2
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6605dupT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4401dupT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7487dupT
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9080
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3565
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2405
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11578
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11008
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17756
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 192
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2611
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 404
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 405
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Cys178LeufsTer2
num of homozygotes: 0
population: European (Finnish)
population: African
population: Latino
population: European (Non-Finnish)
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS

http://identifiers.org/exac.variant/7-143956196-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956196
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956196
    reference: chr 7
allele count: 1
allele frequency: 1.177551164598102e-5
allele num: 84922
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4407T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4407T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.526T>G
  hgvsp: ENSP00000420502.1:p.Phe176Val
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7493T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6611T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7493T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35015T>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21369A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7493T>G
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12675
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17687
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10632
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4461
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1324
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10451
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 171
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20696
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 409
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe176Val
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum

7-143956197-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956197
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956197
    reference: chr 7
allele count: 1
allele frequency: 1.197432704282019e-5
allele num: 83512
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6612C>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7494C>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.525C>A
  hgvsp: ENSP00000420502.1:p.His175Gln
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4408C>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4408C>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21368G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7494C>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7494C>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35014C>A
  variant of: http://identifiers.org/hgnc/33846
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12964
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 56
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16960
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2002
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10184
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10965
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 180
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25837
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 220
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 4.25e1
  variant carriers: 0
hgvs: p.His175Gln
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: African
population: Latino
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/7-143956203-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956203
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956203
    reference: chr 7
allele count: 1
allele frequency: 1.291355665177303e-5
allele num: 77438
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21362A>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7500T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.519T>G
  hgvsp: ENSP00000420502.1:p.Ile173Met
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4414T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6618T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4414T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7500T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7500T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35008T>G
  variant of: http://identifiers.org/hgnc/33846
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1610
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14125
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8690
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5844
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14685
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 334
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 90
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 198
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1207
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Ile173Met
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP

7-143956209-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956209
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956209
    reference: chr 7
allele count: 3
allele frequency: 4.266939750810719e-5
allele num: 70308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4420G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7506G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7506G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21356C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4420G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7506G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+35002G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.513G>A
  hgvsp: ENST00000493325.1:c.513G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6624G>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1351
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13416
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16354
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7154
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11340
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7157
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1786
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 710
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7353
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1672
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1359
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Gln171Gln
num of homozygotes: 0
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: DP

http://identifiers.org/exac.variant/7-143956215-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956215
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956215
    reference: chr 7
allele count: 1
allele frequency: 1.537326282130119e-5
allele num: 65048
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7512G>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6630G>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34996G>T
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4426G>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21350C>A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.507G>T
  hgvsp: ENSP00000420502.1:p.Arg169Ser
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4426G>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7512G>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7512G>T
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9734
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8186
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1161
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17339
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13890
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1532
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6480
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 637
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1171
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14449
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 247
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 349
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Arg169Ser
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

7-143956225-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956225
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956225
    reference: chr 7
allele count: 2
allele frequency: 3.610368979709727e-5
allele num: 55396
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34986C>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6640C>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.497C>G
  hgvsp: ENSP00000420502.1:p.Pro166Arg
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7522C>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4436C>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7522C>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4436C>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7522C>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21340G>C
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6296
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4679
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18456
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 119
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11367
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 11699
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 114
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 116
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1004
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 536
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 489
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Pro166Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: DP

7-143956249-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956249
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956249
    reference: chr 7
allele count: 1
allele frequency: 3.126954346466542e-5
allele num: 31980
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4460A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7546A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6664A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4460A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34962A>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7546A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.473A>G
  hgvsp: ENSP00000420502.1:p.His158Arg
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21316T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7546A>G
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 18236
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1687
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 978
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11188
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1715
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20620
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21083
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 856
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
hgvs: p.His158Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
population: South Asian
population: Latino
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQ

7-143956257-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956257
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956257
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 23864
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7554C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6672C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7554C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34954C>T
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4468C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21308G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4468C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.465C>T
  hgvsp: ENST00000493325.1:c.465C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7554C>T
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23986
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 208
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17023
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8781
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1238
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1866
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 282
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24130
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Ser155Ser
num of homozygotes: 0
population: Other
population: East Asian
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: DP

7-143956261-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956261
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956261
    reference: chr 7
allele count: 1
allele frequency: 4.518344478583047e-5
allele num: 22132
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7558T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7558T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.461T>C
  hgvsp: ENSP00000420502.1:p.Leu154Ser
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7558T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21304A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4472T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6676T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4472T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34950T>C
  variant of: http://identifiers.org/hgnc/33846
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8089
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1019
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 77
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 985
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16501
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24965
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1182
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25193
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu154Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum

7-143956268-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956268
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956268
    reference: chr 7
allele count: 1
allele frequency: 5.859603890776983e-5
allele num: 17066
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21297C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6683G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4479G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34943G>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4479G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7565G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.454G>C
  hgvsp: ENSP00000420502.1:p.Val152Leu
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7565G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7565G>C
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 553
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27135
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15026
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6281
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 873
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1304
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Val152Leu
num of homozygotes: 0
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS

7-143956290-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956290
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956290
    reference: chr 7
allele count: 2
allele frequency: 2.446183953033268e-4
allele num: 8176
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34921G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4501G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21275C>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6705G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7587G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.432G>A
  hgvsp: ENST00000493325.1:c.432G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7587G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7587G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4501G>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2892
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10627
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30394
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1779
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1479
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ala144Ala
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

7-143956293-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956293
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956293
    reference: chr 7
allele count: 3
allele frequency: 3.989361702127659e-4
allele num: 7520
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.429C>T
  hgvsp: ENST00000493325.1:c.429C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6708C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7590C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21272G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4504C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4504C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7590C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7590C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34918C>T
  variant of: http://identifiers.org/hgnc/33846
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30694
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 244
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10285
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 131
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 203
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1447
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Leu143Leu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: East Asian
population: Other
population: European (Finnish)
population: Latino
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: QD
site quality: ReadPosRankSum

7-143956416-CAGAA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956416
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956412
    reference: chr 7
allele count: 3
allele frequency: 4.749841671944268e-4
allele num: 6316
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7717_579-7714delTTCT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4631_158-4628delTTCT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34791_-13+34794delTTCT
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21146_494-21143delAAAG
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.302_305delTTCT
  hgvsp: ENSP00000420502.1:p.Phe101CysfsTer15
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6835_264-6832delTTCT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4631_161-4628delTTCT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7717_113-7714delTTCT
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7717_371-7714delTTCT
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 1611
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 58
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30474
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 207
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 38
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 797
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14492
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2038
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 589
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 454
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Phe101CysfsTer15
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: Latino
reference allele: CAGAA
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum

7-143956429-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956429
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956429
    reference: chr 7
allele count: 7
allele frequency: 8.150908244061481e-4
allele num: 8588
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6844T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4640T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21136A>G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34782T>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.293T>C
  hgvsp: ENSP00000420502.1:p.Met98Thr
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4640T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7726T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7726T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7726T>C
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28024
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19025
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 37
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2093
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 284
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 16678
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1256
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1573
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1656
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Met98Thr
num of homozygotes: 0
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: A
site quality: DP
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum

7-143956432-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956432
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956432
    reference: chr 7
allele count: 161
allele frequency: 1.713130453287933e-2
allele num: 9398
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7729T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7729T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.290T>A
  hgvsp: ENSP00000420502.1:p.Met97Lys
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6847T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7729T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21133A>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34779T>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4643T>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4643T>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 26930
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 20325
  bin: 7.5e0
  variant carriers: 74
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 3.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 40
  bin: 4.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 50
genotype depth: GenotypeDepth
  all individuals: 349
  bin: 2.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2291
  bin: 1.25e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 1553
  bin: 2.25e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1612
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25571
  bin: 7.5e0
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1160
  bin: 1.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 648
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 75
  bin: 4.75e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 17754
  bin: 2.25e1
  variant carriers: 2
hgvs: p.Met97Lys
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: African
population: East Asian
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum

7-143956435-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956435
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956435
    reference: chr 7
allele count: 2
allele frequency: 1.980590215884333e-4
allele num: 10098
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4646G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7732G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7732G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6850G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21130C>G
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.287G>C
  hgvsp: ENSP00000420502.1:p.Arg96Pro
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34776G>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4646G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7732G>C
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26097
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21085
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2586
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 39
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Arg96Pro
num of homozygotes: 0
population: African
population: European (Finnish)
population: Other
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff

7-143956440-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956440
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956440
    reference: chr 7
allele count: 3
allele frequency: 2.333177788147457e-4
allele num: 12858
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7737G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4651G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21125C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34771G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6855G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.282G>A
  hgvsp: ENST00000493325.1:c.282G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7737G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7737G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4651G>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23274
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 145
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23869
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 574
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 461
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1401
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 59
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 7.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 425
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Ala94Ala
num of homozygotes: 0
population: South Asian
population: Other
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
population: African
reference allele: C
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: QD

http://identifiers.org/exac.variant/7-143956443-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956443
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956443
    reference: chr 7
allele count: 1
allele frequency: 6.712310377231843e-5
allele num: 14898
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4654T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7740T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7740T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34768T>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21122A>C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.279T>G
  hgvsp: ENSP00000420502.1:p.Phe93Leu
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4654T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6858T>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7740T>G
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3172
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 69
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24825
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 508
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22112
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1109
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1025
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 365
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 68
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 170
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe93Leu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Other
population: African
population: Latino
reference allele: A
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: DP
site quality: QD

7-143956454-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956454
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956454
    reference: chr 7
allele count: 1
allele frequency: 5.328218243819267e-5
allele num: 18768
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34757C>T
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6869C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7751C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4665C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.268C>T
  hgvsp: ENSP00000420502.1:p.Pro90Ser
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7751C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7751C>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21111G>A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4665C>T
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27057
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 748
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19081
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3738
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 188
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3945
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18226
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1950
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3586
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1354
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1032
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 9.75e1
  variant carriers: 1
hgvs: p.Pro90Ser
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

7-143956460-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956460
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956460
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 21240
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34751G>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4671G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21105C>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7757G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6875G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7757G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.262G>C
  hgvsp: ENSP00000420502.1:p.Ala88Pro
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7757G>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4671G>C
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17293
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4733
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 815
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4079
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27869
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 935
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16655
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1917
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 258
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4236
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Ala88Pro
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: C
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum

7-143956461-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956461
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956461
    reference: chr 7
allele count: 12041
allele frequency: 3.699913962635202e-1
allele num: 32544
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.261A>G
  hgvsp: ENST00000493325.1:c.261A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34750A>G
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7758A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7758A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4672A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7758A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4672A>G
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21104T>C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6876A>G
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 12948
  bin: 2.5e0
  variant carriers: 476
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 94
genotype depth: GenotypeDepth
  all individuals: 21827
  bin: 7.5e0
  variant carriers: 3977
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.25e1
  variant carriers: 463
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 1.75e1
  variant carriers: 3322
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 148
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 1.25e1
  variant carriers: 4823
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 61
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 238
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 43
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 2.25e1
  variant carriers: 1804
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.75e1
  variant carriers: 902
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 113
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 12458
  bin: 2.25e1
  variant carriers: 269
genotype quality: GenotypeQuality
  all individuals: 1388
  bin: 1.75e1
  variant carriers: 324
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 5.25e1
  variant carriers: 578
genotype quality: GenotypeQuality
  all individuals: 9970
  bin: 2.5e0
  variant carriers: 43
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 9.25e1
  variant carriers: 555
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 4.75e1
  variant carriers: 497
hgvs: p.Pro87Pro
num of homozygotes: 62
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: South Asian
population: African
population: Other
population: Latino
reference allele: T
site quality: DP
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

7-143956461-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956461
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956461
    reference: chr 7
allele count: 0
allele frequency: 0.0e0
allele num: 32544
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6876A>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21104T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4672A>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7758A>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.261A>C
  hgvsp: ENST00000493325.1:c.261A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34750A>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7758A>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4672A>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7758A>C
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4722
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12948
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21827
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 33
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 616
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1327
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 298
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9037
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 606
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9970
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 706
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 924
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 777
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 941
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Pro87Pro
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: QD

7-143956465-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956465
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956465
    reference: chr 7
allele count: 2
allele frequency: 4.922713399625874e-5
allele num: 40628
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4676A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6880A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7762A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7762A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34746A>T
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.257A>T
  hgvsp: ENSP00000420502.1:p.His86Leu
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7762A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4676A>T
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21100T>A
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13992
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 620
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4153
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1438
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4411
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22104
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9075
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3354
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3337
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 283
  bin: 5.75e1
  variant carriers: 0
hgvs: p.His86Leu
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: East Asian
population: African
population: Other
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD

7-143956466-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956466
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956466
    reference: chr 7
allele count: 2
allele frequency: 4.900279315921007e-5
allele num: 40814
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7763C>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7763C>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4677C>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.256C>A
  hgvsp: ENSP00000420502.1:p.His86Asn
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34745C>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4677C>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7763C>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21099G>T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6881C>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.95to100.00
genotype depth: GenotypeDepth
  all individuals: 9084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4288
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4313
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 172
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13895
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1456
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1043
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2541
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 197
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3710
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3031
  bin: 2.75e1
  variant carriers: 1
hgvs: p.His86Asn
num of homozygotes: 0
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: African
population: Other
population: East Asian
reference allele: G
site quality: QD
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

7-143956479-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956479
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956479
    reference: chr 7
allele count: 1
allele frequency: 2.204682746152829e-5
allele num: 45358
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4690G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7776G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.243G>A
  hgvsp: ENST00000493325.1:c.243G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4690G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6894G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7776G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21086C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34732G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7776G>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9526
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1880
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11340
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 719
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23419
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3096
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6922
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 901
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21683
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1777
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 831
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Leu81Leu
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: African
population: Latino
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQ
site quality: FS

7-143956480-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956480
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956480
    reference: chr 7
allele count: 1
allele frequency: 2.172213050656008e-5
allele num: 46036
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34731T>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7777T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6895T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.242T>C
  hgvsp: ENSP00000420502.1:p.Leu81Pro
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4691T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21085A>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4691T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7777T>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7777T>C
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1935
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 728
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2960
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23506
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9532
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3274
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 459
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 806
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6508
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 842
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 583
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Leu81Pro
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
population: East Asian
reference allele: A
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD

7-143956484-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956484
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956484
    reference: chr 7
allele count: 7
allele frequency: 1.461316855246127e-4
allele num: 47902
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34727A>C
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7781A>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4695A>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21081T>G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7781A>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6899A>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.238A>C
  hgvsp: ENSP00000420502.1:p.Met80Leu
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4695A>C
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7781A>C
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9297
  bin: 1.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 8409
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10155
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 327
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23832
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 180
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2581
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 776
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2120
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 747
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1267
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1445
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9518
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 694
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2236
  bin: 3.75e1
  variant carriers: 1
hgvs: p.Met80Leu
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: South Asian
population: Other
population: European (Non-Finnish)
population: African
reference allele: T
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: DP
site quality: FS
site quality: ReadPosRankSum

7-143956486-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 143956486
    reference: chr 7
  end: Position
    type: ExactPosition
    position: 143956486
    reference: chr 7
allele count: 6
allele frequency: 1.241978886358932e-4
allele num: 48310
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000476560
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000476560.1:n.158-4697G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244198
  ensembl transcript: ENST00000460955
  gene symbol: RP4-545C24.1
  hgvsc: ENST00000460955.1:n.494-21079C>T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000213214
  ensembl protein: ENSP00000438502
  ensembl transcript: ENST00000543357
  gene symbol: ARHGEF35
  hgvsc: ENST00000543357.1:c.-13+34725G>A
  variant of: http://identifiers.org/hgnc/33846
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000461843
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000461843.1:n.113-7783G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000478806
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000478806.1:n.371-7783G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000463561
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000463561.1:n.579-7783G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000243896
  ensembl protein: ENSP00000420502
  ensembl transcript: ENST00000493325
  gene symbol: OR2A7
  hgvsc: ENST00000493325.1:c.236G>A
  hgvsp: ENSP00000420502.1:p.Arg79Gln
  variant of: http://identifiers.org/hgnc/8234
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000489488
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000489488.1:n.264-6901G>A
  variant of: http://identifiers.org/hgnc/49168
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000244479
  ensembl transcript: ENST00000487102
  gene symbol: OR2A1-AS1
  hgvsc: ENST00000487102.1:n.161-4697G>A
  variant of: http://identifiers.org/hgnc/49168
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 8916
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2554
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2313
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9614
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9256
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23804
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 79
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 669
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg79Gln
num of homozygotes: 0
reference allele: C

GenotypeQuality
all individuals: 1
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5102
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 131
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 52403
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 740
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 959
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.499370088187654e-5
allele num: 66676
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10388
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.502856e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e0

FS
type: SiteQuality
SIO_000300: 1.1741e1

QD
type: SiteQuality
SIO_000300: 3.4e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.38e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.338e0

MQ
type: SiteQuality
SIO_000300: 3.099e1

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 741
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5084
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 958
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 128
bin: 9.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11526
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.500315022051544e-5
allele num: 66662
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.632055480639569e-5
allele num: 10382
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.13e0

QD
type: SiteQuality
SIO_000300: 2.64e0

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

MQ
type: SiteQuality
SIO_000300: 3.087e1

DP
type: SiteQuality
SIO_000300: 1.502479e6

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.67e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: 7.8e-2

GenotypeQuality
all individuals: 40
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 298
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52190
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 726
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 5035
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50177209106746e-5
allele num: 66588
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10368
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6610
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.68e0

FS
type: SiteQuality
SIO_000300: 5.165e0

DP
type: SiteQuality
SIO_000300: 1.499749e6

QD
type: SiteQuality
SIO_000300: 8.77e0

MQ
type: SiteQuality
SIO_000300: 2.971e1

VQSLOD
type: SiteQuality
SIO_000300: -5.468e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.17e-1

MQRankSum
type: SiteQuality
SIO_000300: -8.83e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.21e-1

GenotypeQuality
all individuals: 397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52125
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 5029
bin: 6.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.827186715582159e-4
allele num: 10358
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

DP
type: SiteQuality
SIO_000300: 1.497426e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.273e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -4.515e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

QD
type: SiteQuality
SIO_000300: 2.75e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.917e1

GenotypeQuality
all individuals: 763
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 725
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 397
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 5.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10358
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66540
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 908
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.211387038158692e-4
allele num: 16510
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.497426e6

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.3e-1

QD
type: SiteQuality
SIO_000300: 2.75e0

VQSLOD
type: SiteQuality
SIO_000300: -4.515e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -4.273e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.6e-1

MQ
type: SiteQuality
SIO_000300: 2.917e1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 763
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 275
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 427
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 49
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 28
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503081316699233e-5
allele num: 66530
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6606
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11506
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16510
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.66e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.78e-1

QD
type: SiteQuality
SIO_000300: 5.5e-1

MQ
type: SiteQuality
SIO_000300: 2.781e1

VQSLOD
type: SiteQuality
SIO_000300: -5.436e0

FS
type: SiteQuality
SIO_000300: 3.611e0

ClippingRankSum
type: SiteQuality
SIO_000300: -8.0e-3

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

DP
type: SiteQuality
SIO_000300: 1.495934e6

MQRankSum
type: SiteQuality
SIO_000300: -1.934e0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51991
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5020
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 945
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 762
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 501
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 720
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 40
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11496
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.5e-2

MQ
type: SiteQuality
SIO_000300: 2.875e1

FS
type: SiteQuality
SIO_000300: 1.2799e1

VQSLOD
type: SiteQuality
SIO_000300: -5.41e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.64e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -9.26e-1

DP
type: SiteQuality
SIO_000300: 1.495157e6

ClippingRankSum
type: SiteQuality
SIO_000300: -6.54e-1

QD
type: SiteQuality
SIO_000300: 3.18e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 8
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 2
allele frequency: 1.73973556019485e-4
allele num: 11496
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.674922600619196e-5
allele num: 10336
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6602
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 31
allele frequency: 4.662355241389682e-4
allele num: 66490
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16508
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.38e-1

DP
type: SiteQuality
SIO_000300: 1.496532e6

MQ
type: SiteQuality
SIO_000300: 2.911e1

QD
type: SiteQuality
SIO_000300: 5.39e0

VQSLOD
type: SiteQuality
SIO_000300: -3.653e0

ClippingRankSum
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SIO_000300: -1.34e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 6.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.03e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 11

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11454
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.656925950472977e-4
allele num: 66388
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16486
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6582
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.272e0

QD
type: SiteQuality
SIO_000300: 2.2e0

FS
type: SiteQuality
SIO_000300: 1.41e0

DP
type: SiteQuality
SIO_000300: 1.491987e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.7e-1

MQ
type: SiteQuality
SIO_000300: 2.784e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.3e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.8e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.6e-2

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66126
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16406
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10236
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.768853034023149e-5
allele num: 11404
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.842e1

QD
type: SiteQuality
SIO_000300: 1.67e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.06e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.416e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 8.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.94e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.76e-1

DP
type: SiteQuality
SIO_000300: 1.483396e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 74
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.513703443429375e-4
allele num: 2846
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 320
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 308
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 502
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.13e0

QD
type: SiteQuality
SIO_000300: 3.55e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.263e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.260000000000001e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.605e0

DP
type: SiteQuality
SIO_000300: 1.91373e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.59e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.040530268478823e-5
allele num: 65778
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11308
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6492
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.663e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

FS
type: SiteQuality
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ClippingRankSum
type: SiteQuality
SIO_000300: -6.22e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.09e-1

QD
type: SiteQuality
SIO_000300: 1.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.21e-1

MQ
type: SiteQuality
SIO_000300: 2.894e1

DP
type: SiteQuality
SIO_000300: 1.471687e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.928571428571429e-5
allele num: 11200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6410
num of homozygotes: 0

African
type: Population
allele count: 113
allele frequency: 1.116380162023316e-2
allele num: 10122
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.065603923973023e-5
allele num: 65240
num of homozygotes: 0

DP
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1

MQRankSum
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FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8606
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11200
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African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6414
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.532848953064165e-5
allele num: 65238
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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DP
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.713e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
type: Population
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Other
type: Population
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allele frequency: 0.0e0
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European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542495758136665e-5
allele num: 64830
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Latino
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8592
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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VQSLOD
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DP
type: SiteQuality
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QD
type: SiteQuality
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FS
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MQ
type: SiteQuality
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MQRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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InbreedingCoeff
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3038
bin: 2.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8592
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16172
num of homozygotes: 0

African
type: Population
allele count: 32
allele frequency: 3.181547027241996e-3
allele num: 10058
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.979885057471264e-5
allele num: 11136
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.542495758136665e-5
allele num: 64830
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.430372e6

MQRankSum
type: SiteQuality
SIO_000300: 1.3e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.04e0

QD
type: SiteQuality
SIO_000300: 3.33e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.999999999999999e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.571e0

MQ
type: SiteQuality
SIO_000300: 2.874e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 8.1e-2

GenotypeQuality
all individuals: 661
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 75
bin: 5.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6320
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64546
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11084
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16140
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10030
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.165229550221394e-4
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 882
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.06e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

MQ
type: SiteQuality
SIO_000300: 3.769e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQRankSum
type: SiteQuality
SIO_000300: 9.03e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.081e0

FS
type: SiteQuality
SIO_000300: 3.663e0

DP
type: SiteQuality
SIO_000300: 1.412017e6

BaseQRankSum
type: SiteQuality
SIO_000300: 8.76e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.105e0

GenotypeQuality
all individuals: 660
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 499
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GenotypeQuality
all individuals: 3866
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16058
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.557632398753894e-5
allele num: 64200
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11004
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6284
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8560
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 876
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.701e1

DP
type: SiteQuality
SIO_000300: 1.402628e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.475e0

QD
type: SiteQuality
SIO_000300: 3.51e0

BaseQRankSum
type: SiteQuality
SIO_000300: 8.78e-1

FS
type: SiteQuality
SIO_000300: 8.528e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -9.25e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

GenotypeQuality
all individuals: 167
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1038
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6266
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9916
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.12256049960968e-5
allele num: 64050
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16030
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10994
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.2e-3

MQRankSum
type: SiteQuality
SIO_000300: 5.81e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.031e0

DP
type: SiteQuality
SIO_000300: 1.393002e6

MQ
type: SiteQuality
SIO_000300: 2.727e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.69e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.73e-1

FS
type: SiteQuality
SIO_000300: 8.3e-1

QD
type: SiteQuality
SIO_000300: 2.98e0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1256
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43744
bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 693
bin: 4.25e1
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GenotypeQuality
all individuals: 1127
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
all individuals: 151
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variant carriers: 0

GenotypeQuality
all individuals: 110
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variant carriers: 0

GenotypeQuality
all individuals: 1327
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 815
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 5.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6264
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.248127808287569e-4
allele num: 16024
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.39e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.638e0

MQRankSum
type: SiteQuality
SIO_000300: -1.262e0

DP
type: SiteQuality
SIO_000300: 1.388576e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.3e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.618e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.35e0

QD
type: SiteQuality
SIO_000300: 4.04e0

MQ
type: SiteQuality
SIO_000300: 2.862e1

FS
type: SiteQuality
SIO_000300: 1.431e0

GenotypeQuality
all individuals: 20
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 226
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1261
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 694
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 848
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1440
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42666
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 108
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variant carriers: 0

GenotypeQuality
all individuals: 1294
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9826
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10912
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8546
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.568184669426672e-5
allele num: 63768
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 8.380000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.049e0

VQSLOD
type: SiteQuality
SIO_000300: -3.312e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 3.211e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.74e-1

FS
type: SiteQuality
SIO_000300: 4.087e0

MQRankSum
type: SiteQuality
SIO_000300: 5.21e-1

DP
type: SiteQuality
SIO_000300: 1.377342e6

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 120
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 847
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GenotypeQuality
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GenotypeQuality
all individuals: 175
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 121
bin: 9.25e1
variant carriers: 2

GenotypeQuality
all individuals: 741
bin: 4.25e1
variant carriers: 1

GenotypeQuality
all individuals: 3784
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 8.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10914
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9822
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.703668861712135e-5
allele num: 63780
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15988
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 868
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.340823970037453e-4
allele num: 8544
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6238
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.37204e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.4e-3

MQ
type: SiteQuality
SIO_000300: 2.716e1

QD
type: SiteQuality
SIO_000300: 3.1e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.34e0

MQRankSum
type: SiteQuality
SIO_000300: -7.9e-1

FS
type: SiteQuality
SIO_000300: 6.15e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.063e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.4e-2

GenotypeQuality
all individuals: 3751
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 118
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 893
bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
all individuals: 4138
bin: 2.25e1
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GenotypeQuality
all individuals: 179
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GenotypeQuality
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GenotypeQuality
all individuals: 692
bin: 9.75e1
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
all individuals: 246
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GenotypeQuality
all individuals: 245
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1316
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 609
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8526
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15954
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10874
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6208
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.575200050406402e-5
allele num: 63484
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9736
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.443e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.46e-1

MQ
type: SiteQuality
SIO_000300: 2.94e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-3

ClippingRankSum
type: SiteQuality
SIO_000300: -1.26e0

VQSLOD
type: SiteQuality
SIO_000300: -5.003e0

DP
type: SiteQuality
SIO_000300: 1.364984e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

QD
type: SiteQuality
SIO_000300: 4.35e0

GenotypeQuality
all individuals: 590
bin: 7.75e1
variant carriers: 16

GenotypeQuality
all individuals: 3684
bin: 6.75e1
variant carriers: 10

GenotypeQuality
all individuals: 210
bin: 1.75e1
variant carriers: 6

GenotypeQuality
all individuals: 235
bin: 7.5e0
variant carriers: 6

GenotypeQuality
all individuals: 109
bin: 8.75e1
variant carriers: 13

GenotypeQuality
all individuals: 65
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 748
bin: 7.25e1
variant carriers: 12

GenotypeQuality
all individuals: 126
bin: 1.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1186
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 42514
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 245
bin: 8.25e1
variant carriers: 16

GenotypeQuality
all individuals: 1285
bin: 3.75e1
variant carriers: 17

GenotypeQuality
all individuals: 1177
bin: 9.75e1
variant carriers: 599

GenotypeQuality
all individuals: 789
bin: 5.25e1
variant carriers: 13

Latino
type: Population
allele count: 38
allele frequency: 3.502949852507375e-3
allele num: 10848
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6202
num of homozygotes: 0

African
type: Population
allele count: 709
allele frequency: 7.419422352448724e-2
allele num: 9556
num of homozygotes: 6

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8508
num of homozygotes: 0

Other
type: Population
allele count: 5
allele frequency: 5.787037037037037e-3
allele num: 864
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 17
allele frequency: 2.687577070224808e-4
allele num: 63254
num of homozygotes: 1

South Asian
type: Population
allele count: 2
allele frequency: 1.253604111821487e-4
allele num: 15954
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.781e1

MQRankSum
type: SiteQuality
SIO_000300: -1.15e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.276e0

DP
type: SiteQuality
SIO_000300: 1.37424e6

VQSLOD
type: SiteQuality
SIO_000300: -3.866e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: 1.09e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.06e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15926
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10798
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6196
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.588814744200826e-5
allele num: 62940
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -6.38e-1

MQ
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 3.29e0

DP
type: SiteQuality
SIO_000300: 1.353034e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -8.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 2.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.15e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10766
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6192
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele frequency: 0.0e0
allele num: 9274
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 15914
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.594489444479878e-5
allele num: 62716
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.728e0

InbreedingCoeff
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SIO_000300: -2.0e-3

FS
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SIO_000300: 0.0e0

ReadPosRankSum
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QD
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MQRankSum
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MQ
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SIO_000300: 2.909e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.963e0

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

DP
type: SiteQuality
SIO_000300: 1.353901e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8912
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 61466
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6130
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.302785831337451e-5
allele num: 15866
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 10590
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QD
type: SiteQuality
SIO_000300: 6.51e0

MQ
type: SiteQuality
SIO_000300: 2.898e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.5e0

DP
type: SiteQuality
SIO_000300: 1.341129e6

InbreedingCoeff
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SIO_000300: -1.2e-3

FS
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SIO_000300: 0.0e0

BaseQRankSum
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VQSLOD
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MQRankSum
type: SiteQuality
SIO_000300: -1.95e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.52e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

Other
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allele frequency: 0.0e0
allele num: 842
num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 6.299609424215698e-5
allele num: 15874
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8338
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 8892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10584
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6122
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.628187176397799e-5
allele num: 61418
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.792e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.4e-3

ClippingRankSum
type: SiteQuality
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

MQRankSum
type: SiteQuality
SIO_000300: 3.4e-2

DP
type: SiteQuality
SIO_000300: 1.341858e6

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8332
num of homozygotes: 0

Other
type: Population
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 3
allele frequency: 3.372302158273381e-4
allele num: 8896
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 10572
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 4
allele frequency: 6.514021431130509e-5
allele num: 61406
num of homozygotes: 0

South Asian
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FS
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VQSLOD
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MQRankSum
type: SiteQuality
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ClippingRankSum
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QD
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InbreedingCoeff
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DP
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ReadPosRankSum
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MQ
type: SiteQuality
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BaseQRankSum
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SIO_000300: 2.08e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 60720
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6086
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Latino
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South Asian
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allele frequency: 6.304375236414071e-5
allele num: 15862
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African
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Other
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BaseQRankSum
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ReadPosRankSum
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QD
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VQSLOD
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FS
type: SiteQuality
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MQ
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InbreedingCoeff
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DP
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MQRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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Other
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allele num: 842
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele frequency: 0.0e0
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East Asian
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South Asian
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allele num: 15842
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African
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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BaseQRankSum
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InbreedingCoeff
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FS
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VQSLOD
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MQ
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ReadPosRankSum
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MQRankSum
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QD
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DP
type: SiteQuality
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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Latino
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allele frequency: 9.57670944263551e-5
allele num: 10442
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African
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 836
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European (Non-Finnish)
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allele count: 2
allele frequency: 3.319171534784917e-5
allele num: 60256
num of homozygotes: 0

VQSLOD
type: SiteQuality
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MQ
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InbreedingCoeff
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ClippingRankSum
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FS
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MQRankSum
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DP
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BaseQRankSum
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ReadPosRankSum
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
type: Population
allele count: 2
allele frequency: 2.318034306907742e-4
allele num: 8628
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 60074
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6050
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 828
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15834
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -5.709e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.99e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 2.806e1

DP
type: SiteQuality
SIO_000300: 1.322953e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.5e-1

QD
type: SiteQuality
SIO_000300: 1.11e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 4.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 9.45e-1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 1.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6040
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15834
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10374
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.91e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.7e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.18e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.314e0

MQRankSum
type: SiteQuality
SIO_000300: -7.43e-1

MQ
type: SiteQuality
SIO_000300: 3.088e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

DP
type: SiteQuality
SIO_000300: 1.319465e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

GenotypeQuality
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bin: 9.75e1
variant carriers: 9

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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bin: 5.25e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15806
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 830
num of homozygotes: 0

East Asian
type: Population
allele count: 15
allele frequency: 1.835535976505139e-3
allele num: 8172
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6012
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.6832749798007e-5
allele num: 59408
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.3e-2

MQRankSum
type: SiteQuality
SIO_000300: -6.6e-2

VQSLOD
type: SiteQuality
SIO_000300: -5.241e0

MQ
type: SiteQuality
SIO_000300: 2.719e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.92e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.312591e6

QD
type: SiteQuality
SIO_000300: 1.57e0

GenotypeQuality
all individuals: 46
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 90
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variant carriers: 0

GenotypeQuality
all individuals: 464
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.693308046599838e-5
allele num: 59056
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8446
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15786
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8160
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.74e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

VQSLOD
type: SiteQuality
SIO_000300: -5.444e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.58e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-3

MQ
type: SiteQuality
SIO_000300: 2.655e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.967e0

DP
type: SiteQuality
SIO_000300: 1.306023e6

QD
type: SiteQuality
SIO_000300: 6.53e0

GenotypeQuality
all individuals: 209
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 41854
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 506
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GenotypeQuality
all individuals: 240
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10248
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8134
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 822
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5966
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8400
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 58782
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.348400203148806e-5
allele num: 15752
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.005e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.84e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.3e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.21e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.694e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.6e-3

DP
type: SiteQuality
SIO_000300: 1.30372e6

QD
type: SiteQuality
SIO_000300: 3.89e0

MQ
type: SiteQuality
SIO_000300: 3.086e1

GenotypeQuality
all individuals: 8565
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 689
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variant carriers: 0

GenotypeQuality
all individuals: 42
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1179
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GenotypeQuality
all individuals: 112
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GenotypeQuality
all individuals: 614
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 265
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GenotypeQuality
all individuals: 559
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GenotypeQuality
all individuals: 94
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8088
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5938
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15732
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8324
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10158
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.714148582399122e-5
allele num: 58338
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.044e1

DP
type: SiteQuality
SIO_000300: 1.294613e6

MQRankSum
type: SiteQuality
SIO_000300: 5.94e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.3e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.711e1

VQSLOD
type: SiteQuality
SIO_000300: -5.151e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.5e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

GenotypeQuality
all individuals: 469
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
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GenotypeQuality
all individuals: 323
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 444
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GenotypeQuality
all individuals: 146
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GenotypeQuality
all individuals: 92
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GenotypeQuality
all individuals: 34457
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GenotypeQuality
all individuals: 309
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 551
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9096
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5352
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7612
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.676458806249166e-5
allele num: 14978
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 732
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52374
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.29e0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.4e-3

DP
type: SiteQuality
SIO_000300: 1.181459e6

VQSLOD
type: SiteQuality
SIO_000300: -5.981e0

MQRankSum
type: SiteQuality
SIO_000300: 1.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.370000000000001e-1

QD
type: SiteQuality
SIO_000300: 9.7e-1

MQ
type: SiteQuality
SIO_000300: 2.861e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.99e-1

GenotypeQuality
all individuals: 444
bin: 3.75e1
variant carriers: 43

GenotypeQuality
all individuals: 459
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GenotypeQuality
all individuals: 532
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GenotypeQuality
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GenotypeQuality
all individuals: 114
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variant carriers: 79

GenotypeQuality
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variant carriers: 73

GenotypeQuality
all individuals: 2587
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variant carriers: 66

GenotypeQuality
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GenotypeQuality
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bin: 2.25e1
variant carriers: 40

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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variant carriers: 71

GenotypeQuality
all individuals: 358
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variant carriers: 64

GenotypeQuality
all individuals: 172
bin: 8.25e1
variant carriers: 68

South Asian
type: Population
allele count: 465
allele frequency: 3.170598663575617e-2
allele num: 14666
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 5.390835579514825e-4
allele num: 7420
num of homozygotes: 0

African
type: Population
allele count: 901
allele frequency: 1.252780867630701e-1
allele num: 7192
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1125
allele frequency: 2.229665451086095e-2
allele num: 50456
num of homozygotes: 0

Latino
type: Population
allele count: 139
allele frequency: 1.587845556317112e-2
allele num: 8754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 65
allele frequency: 1.256281407035176e-2
allele num: 5174
num of homozygotes: 0

Other
type: Population
allele count: 15
allele frequency: 2.083333333333333e-2
allele num: 720
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.326e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.699999999999999e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.71e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.38e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.741e1

QD
type: SiteQuality
SIO_000300: 3.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.611e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.6e-2

DP
type: SiteQuality
SIO_000300: 1.197562e6

GenotypeQuality
all individuals: 31
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 370
bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 404
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GenotypeQuality
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GenotypeQuality
all individuals: 192
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GenotypeQuality
all individuals: 893
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GenotypeQuality
all individuals: 99
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GenotypeQuality
all individuals: 37
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GenotypeQuality
all individuals: 417
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GenotypeQuality
all individuals: 215
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GenotypeQuality
all individuals: 2611
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GenotypeQuality
all individuals: 1089
bin: 2.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7140
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 682
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14254
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.088554720133668e-5
allele num: 47880
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -7.000000000000001e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.5e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.7e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 5.76e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.58e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

DP
type: SiteQuality
SIO_000300: 1.083508e6

MQ
type: SiteQuality
SIO_000300: 2.788e1

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4904
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6766
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 8198
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 47880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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South Asian
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allele frequency: 7.015574575557738e-5
allele num: 14254
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.05e0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

QD
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ClippingRankSum
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SIO_000300: 5.76e-1

MQ
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InbreedingCoeff
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ReadPosRankSum
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DP
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SIO_000300: 1.083508e6

BaseQRankSum
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SIO_000300: -4.7e-2

FS
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6366
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.279079924297569e-5
allele num: 13738
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7606
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 636
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
type: SiteQuality
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BaseQRankSum
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QD
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MQ
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InbreedingCoeff
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SIO_000300: -1.19e-2

MQRankSum
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FS
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DP
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ReadPosRankSum
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 4554
num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele count: 1
allele frequency: 7.372456502506635e-5
allele num: 13564
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 6288
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 7424
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 44382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -3.27e-1

DP
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SIO_000300: 9.94909e5

BaseQRankSum
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ClippingRankSum
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SIO_000300: -8.070000000000001e-1

VQSLOD
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MQ
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InbreedingCoeff
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SIO_000300: -1.24e-2

ReadPosRankSum
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SIO_000300: 8.070000000000001e-1

QD
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SIO_000300: 9.550000000000001e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

South Asian
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allele frequency: 0.0e0
allele num: 12774
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6728
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 5826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6346
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 2.441287046530931e-5
allele num: 40962
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4220
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 582
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.23e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.34e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -4.821e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.79e0

MQ
type: SiteQuality
SIO_000300: 2.864e1

MQRankSum
type: SiteQuality
SIO_000300: 6.889999999999999e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.49e-2

QD
type: SiteQuality
SIO_000300: 2.16e0

DP
type: SiteQuality
SIO_000300: 9.17082e5

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 518
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11856
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5858
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 8.099352051835853e-5
allele num: 37040
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3796
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.840000000000001e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.76e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 2.595e1

MQRankSum
type: SiteQuality
SIO_000300: 1.28e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.383e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -5.356e0

QD
type: SiteQuality
SIO_000300: 8.8e-1

DP
type: SiteQuality
SIO_000300: 8.35267e5

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 5268
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.802451333813987e-4
allele num: 5548
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11146
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 34194
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 482
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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ClippingRankSum
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InbreedingCoeff
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DP
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VQSLOD
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FS
type: SiteQuality
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BaseQRankSum
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MQRankSum
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ReadPosRankSum
type: SiteQuality
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QD
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 2.889e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
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allele count: 2
allele frequency: 6.889899407468652e-5
allele num: 29028
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4230
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 4238
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 2858
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 400
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9830
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MQRankSum
type: SiteQuality
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BaseQRankSum
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ReadPosRankSum
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ClippingRankSum
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FS
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
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VQSLOD
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MQ
type: SiteQuality
SIO_000300: 2.868e1

QD
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DP
type: SiteQuality
SIO_000300: 6.73431e5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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East Asian
type: Population
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Other
type: Population
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South Asian
type: Population
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allele num: 6646
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Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 1992
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European (Finnish)
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allele frequency: 0.0e0
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InbreedingCoeff
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ReadPosRankSum
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QD
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VQSLOD
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MQRankSum
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DP
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BaseQRankSum
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FS
type: SiteQuality
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ClippingRankSum
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MQ
type: SiteQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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type: Population
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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African
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5238
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 2.394e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.33e-2

QD
type: SiteQuality
SIO_000300: 8.859999999999999e0

VQSLOD
type: SiteQuality
SIO_000300: -5.669e0

DP
type: SiteQuality
SIO_000300: 3.8434e5

GenotypeQuality
all individuals: 1390
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1207
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 9.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19182
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 80
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 8.74737578726382e-5
allele num: 11432
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4932
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1212
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 826
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1880
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1672
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 178
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.705e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.55e-2

MQRankSum
type: SiteQuality
SIO_000300: -2.98e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.772e0

DP
type: SiteQuality
SIO_000300: 3.66381e5

QD
type: SiteQuality
SIO_000300: 5.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.38e-1

FS
type: SiteQuality
SIO_000300: 6.446e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.56e-1

GenotypeQuality
all individuals: 26921
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1583
bin: 2.5e0
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 7.75e1
variant carriers: 1

African
type: Population
allele count: 1
allele frequency: 7.564296520423601e-4
allele num: 1322
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 542
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 834
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8840
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1368
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4018
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 142
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.889e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.13e-2

QD
type: SiteQuality
SIO_000300: 5.73e0

DP
type: SiteQuality
SIO_000300: 3.21074e5

MQRankSum
type: SiteQuality
SIO_000300: 8.95e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.565e0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.46e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 38
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8528
bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 51
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variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2066
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 674
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 550
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 396
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 4.690431519699812e-4
allele num: 4264
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 156
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.016e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

MQRankSum
type: SiteQuality
SIO_000300: -1.7e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.45e0

QD
type: SiteQuality
SIO_000300: 7.83e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.729999999999999e-2

ClippingRankSum
type: SiteQuality
SIO_000300: 9.57e-1

FS
type: SiteQuality
SIO_000300: 2.1371e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.88e-1

DP
type: SiteQuality
SIO_000300: 2.30139e5

GenotypeQuality
all individuals: 49
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2621
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 545
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variant carriers: 0

GenotypeQuality
all individuals: 1436
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 500
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 29
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variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 624
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3908
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 5.213764337851929e-4
allele num: 1918
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 4.048582995951417e-3
allele num: 494
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 70
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 382
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.345e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.69e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -4.04e-1

MQ
type: SiteQuality
SIO_000300: 2.891e1

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -3.79e0

DP
type: SiteQuality
SIO_000300: 2.21746e5

FS
type: SiteQuality
SIO_000300: 4.999e0

QD
type: SiteQuality
SIO_000300: 2.2e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1397
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 56
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 150
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variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 28458
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1627
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 147
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12006
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3358
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 134
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.097560975609756e-3
allele num: 328
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 2.958579881656805e-3
allele num: 338
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 3.58e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.58e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 5.5e-1

QD
type: SiteQuality
SIO_000300: 3.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.950000000000001e-2

DP
type: SiteQuality
SIO_000300: 2.40219e5

FS
type: SiteQuality
SIO_000300: 1.516e1

VQSLOD
type: SiteQuality
SIO_000300: -9.952e-1

MQ
type: SiteQuality
SIO_000300: 2.99e1

BaseQRankSum
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 792
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 619
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26519
bin: 7.5e0
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 31
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variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 2

GenotypeQuality
all individuals: 221
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GenotypeQuality
all individuals: 57
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GenotypeQuality
all individuals: 22
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variant carriers: 4

GenotypeQuality
all individuals: 42
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GenotypeQuality
all individuals: 1287
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 207
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 2
allele frequency: 4.484304932735426e-3
allele num: 446
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 472
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 242
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 86
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 1.073883161512028e-3
allele num: 4656
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 714
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1972
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 2.89257e5

FS
type: SiteQuality
SIO_000300: 1.757e0

MQ
type: SiteQuality
SIO_000300: 2.934e1

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

QD
type: SiteQuality
SIO_000300: 5.24e0

VQSLOD
type: SiteQuality
SIO_000300: -4.052e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.97e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.149e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.61e-1

GenotypeQuality
all individuals: 271
bin: 9.75e1
variant carriers: 71

GenotypeQuality
all individuals: 814
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 58
bin: 5.75e1
variant carriers: 18

GenotypeQuality
all individuals: 237
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variant carriers: 4

GenotypeQuality
all individuals: 69
bin: 5.25e1
variant carriers: 16

GenotypeQuality
all individuals: 98
bin: 7.75e1
variant carriers: 21

GenotypeQuality
all individuals: 37
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variant carriers: 11

GenotypeQuality
all individuals: 91
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variant carriers: 14

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 19

GenotypeQuality
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variant carriers: 6

GenotypeQuality
all individuals: 233
bin: 6.75e1
variant carriers: 13

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 60
bin: 8.25e1
variant carriers: 18

South Asian
type: Population
allele count: 3
allele frequency: 1.428571428571429e-3
allele num: 2100
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 138
allele frequency: 2.681694520015546e-2
allele num: 5146
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 13
allele frequency: 4.779411764705882e-2
allele num: 272
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 4.11522633744856e-3
allele num: 486
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 5.208333333333333e-3
allele num: 768
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 536
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-2
allele num: 90
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 2.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.11e0

DP
type: SiteQuality
SIO_000300: 3.0634e5

QD
type: SiteQuality
SIO_000300: 4.08e0

FS
type: SiteQuality
SIO_000300: 1.158e0

MQ
type: SiteQuality
SIO_000300: 3.012e1

VQSLOD
type: SiteQuality
SIO_000300: -3.879e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.48e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

GenotypeQuality
all individuals: 2112
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 755
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 232
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GenotypeQuality
all individuals: 24714
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GenotypeQuality
all individuals: 298
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GenotypeQuality
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GenotypeQuality
all individuals: 108
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 105
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variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 1.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 332
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 90
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.544842254519674e-4
allele num: 5642
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2150
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.29e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.49e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.659e0

MQRankSum
type: SiteQuality
SIO_000300: -3.32e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.479e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.22e-1

DP
type: SiteQuality
SIO_000300: 3.1989e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.65e-2

GenotypeQuality
all individuals: 1118
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 40
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GenotypeQuality
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GenotypeQuality
all individuals: 154
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GenotypeQuality
all individuals: 22721
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GenotypeQuality
all individuals: 1596
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GenotypeQuality
all individuals: 155
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GenotypeQuality
all individuals: 21053
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GenotypeQuality
all individuals: 207
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GenotypeQuality
all individuals: 2131
bin: 6.25e1
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GenotypeQuality
all individuals: 1001
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 300
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 59
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 2
allele frequency: 7.552870090634441e-4
allele num: 2648
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 110
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.383125864453665e-4
allele num: 7230
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 810
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 452
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 950
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.52674e5

ClippingRankSum
type: SiteQuality
SIO_000300: -3.65e-1

FS
type: SiteQuality
SIO_000300: 2.557e0

MQ
type: SiteQuality
SIO_000300: 2.988e1

VQSLOD
type: SiteQuality
SIO_000300: -4.127e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.98e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.46e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.65e-1

QD
type: SiteQuality
SIO_000300: 2.65e0

GenotypeQuality
all individuals: 21197
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 62
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 7.25e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 3.322259136212625e-4
allele num: 3010
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 124
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -4.558e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.19e-1

MQRankSum
type: SiteQuality
SIO_000300: -3.06e-1

MQ
type: SiteQuality
SIO_000300: 2.832e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.47e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.51e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.29e-1

DP
type: SiteQuality
SIO_000300: 3.77722e5

QD
type: SiteQuality
SIO_000300: 2.14e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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GenotypeQuality
all individuals: 449
bin: 6.75e1
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GenotypeQuality
all individuals: 42
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10606
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 148
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1318
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1328
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 950
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 774
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 2.74423710208562e-4
allele num: 3644
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 4.74e0

MQRankSum
type: SiteQuality
SIO_000300: 5.79e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.24451e5

VQSLOD
type: SiteQuality
SIO_000300: -5.023e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.72e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.159e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.448e0

MQ
type: SiteQuality
SIO_000300: 2.8e1

GenotypeQuality
all individuals: 992
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 52
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GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 172
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variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 186
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1466
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1068
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4018
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12080
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.47e-1

MQ
type: SiteQuality
SIO_000300: 3.128e1

DP
type: SiteQuality
SIO_000300: 4.56613e5

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.31e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.019e0

MQRankSum
type: SiteQuality
SIO_000300: 4.74e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.47e-1

QD
type: SiteQuality
SIO_000300: 1.987e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.47e-1

GenotypeQuality
all individuals: 706
bin: 5.75e1
variant carriers: 652

GenotypeQuality
all individuals: 589
bin: 3.75e1
variant carriers: 295

GenotypeQuality
all individuals: 941
bin: 2.75e1
variant carriers: 249

GenotypeQuality
all individuals: 777
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variant carriers: 728

GenotypeQuality
all individuals: 946
bin: 6.75e1
variant carriers: 755

GenotypeQuality
all individuals: 489
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variant carriers: 373

GenotypeQuality
all individuals: 924
bin: 1.25e1
variant carriers: 229

GenotypeQuality
all individuals: 11028
bin: 7.5e0
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GenotypeQuality
all individuals: 856
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variant carriers: 232

GenotypeQuality
all individuals: 2198
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variant carriers: 635

GenotypeQuality
all individuals: 748
bin: 8.25e1
variant carriers: 709

GenotypeQuality
all individuals: 649
bin: 8.75e1
variant carriers: 629

GenotypeQuality
all individuals: 7872
bin: 9.75e1
variant carriers: 7793

GenotypeQuality
all individuals: 875
bin: 7.25e1
variant carriers: 804

European (Non-Finnish)
type: Population
allele count: 6439
allele frequency: 3.623115012379023e-1
allele num: 17772
num of homozygotes: 23

East Asian
type: Population
allele count: 1220
allele frequency: 4.391648668106551e-1
allele num: 2778
num of homozygotes: 7

European (Finnish)
type: Population
allele count: 559
allele frequency: 3.802721088435374e-1
allele num: 1470
num of homozygotes: 3

South Asian
type: Population
allele count: 1998
allele frequency: 3.523809523809524e-1
allele num: 5670
num of homozygotes: 11

African
type: Population
allele count: 522
allele frequency: 2.671443193449335e-1
allele num: 1954
num of homozygotes: 7

Other
type: Population
allele count: 89
allele frequency: 3.423076923076923e-1
allele num: 260
num of homozygotes: 0

Latino
type: Population
allele count: 1214
allele frequency: 4.598484848484848e-1
allele num: 2640
num of homozygotes: 11

DP
type: SiteQuality
SIO_000300: 5.74863e5

MQ
type: SiteQuality
SIO_000300: 2.985e1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 7.83e0

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.26e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.031e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

GenotypeQuality
all individuals: 11028
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 875
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variant carriers: 0

GenotypeQuality
all individuals: 946
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variant carriers: 0

GenotypeQuality
all individuals: 1388
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variant carriers: 0

GenotypeQuality
all individuals: 856
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variant carriers: 0

GenotypeQuality
all individuals: 12458
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GenotypeQuality
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GenotypeQuality
all individuals: 7872
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variant carriers: 1

GenotypeQuality
all individuals: 649
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 665
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variant carriers: 0

GenotypeQuality
all individuals: 748
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variant carriers: 0

GenotypeQuality
all individuals: 2198
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2778
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 260
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1954
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5670
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1470
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 17772
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.48e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.26e0

MQ
type: SiteQuality
SIO_000300: 2.985e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.031e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.98e-1

DP
type: SiteQuality
SIO_000300: 5.74863e5

MQRankSum
type: SiteQuality
SIO_000300: 8.500000000000001e-2

QD
type: SiteQuality
SIO_000300: 7.83e0

GenotypeQuality
all individuals: 3004
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variant carriers: 1

GenotypeQuality
all individuals: 2539
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 967
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 378
bin: 7.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.462293618920125e-5
allele num: 22410
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3278
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1962
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3554
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.424778761061947e-4
allele num: 2260
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 294
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6870
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.024e1

QD
type: SiteQuality
SIO_000300: 3.3e-1

DP
type: SiteQuality
SIO_000300: 5.79848e5

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

FS
type: SiteQuality
SIO_000300: 2.30357e2

BaseQRankSum
type: SiteQuality
SIO_000300: 6.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.23e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.56e-2

MQRankSum
type: SiteQuality
SIO_000300: -3.61e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.459e2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3603
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variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 4.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3294
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.444444444444445e-5
allele num: 22500
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1998
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6908
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 4.420866489832007e-4
allele num: 2262
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 292
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 3.3e-1

FS
type: SiteQuality
SIO_000300: 2.29494e2

MQ
type: SiteQuality
SIO_000300: 3.011e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.251e0

DP
type: SiteQuality
SIO_000300: 5.82453e5

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.3e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.52e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.443e2

MQRankSum
type: SiteQuality
SIO_000300: -4.48e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.14e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 321
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GenotypeQuality
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GenotypeQuality
all individuals: 166
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GenotypeQuality
all individuals: 157
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variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.006731308598445e-5
allele num: 24958
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7602
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2280
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3856
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2766
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3560
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.04e0

DP
type: SiteQuality
SIO_000300: 6.42543e5

ClippingRankSum
type: SiteQuality
SIO_000300: 7.2e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.206e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.26e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.38e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.41e-1

QD
type: SiteQuality
SIO_000300: 8.4e0

MQ
type: SiteQuality
SIO_000300: 3.164e1

FS
type: SiteQuality
SIO_000300: 0.0e0

GenotypeQuality
all individuals: 1507
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3827
bin: 3.25e1
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GenotypeQuality
all individuals: 21901
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 745
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 493
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1719
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 10382
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2375
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1309
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3588
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2840
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.951632024025923e-5
allele num: 25306
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7754
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 338
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2314
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3896
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.04e-1

FS
type: SiteQuality
SIO_000300: 1.799e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.919999999999999e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.586e0

MQ
type: SiteQuality
SIO_000300: 3.184e1

MQRankSum
type: SiteQuality
SIO_000300: -7.69e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.116e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.15e-2

DP
type: SiteQuality
SIO_000300: 6.48118e5

QD
type: SiteQuality
SIO_000300: 2.08e0

GenotypeQuality
all individuals: 528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 498
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22671
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 495
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 701
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 191
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7676
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3275
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 350
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 389
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3717
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1449
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 8.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2448
num of homozygotes: 0

East Asian
type: Population
allele count: 7
allele frequency: 1.741293532338309e-3
allele num: 4020
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3712
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8034
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 346
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 26358
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2984
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

QD
type: SiteQuality
SIO_000300: 2.4e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.78e0

MQRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQ
type: SiteQuality
SIO_000300: 2.972e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.89e-2

VQSLOD
type: SiteQuality
SIO_000300: -4.252e0

DP
type: SiteQuality
SIO_000300: 6.73019e5

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.07e-1