6-29692926-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692926
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692926
    reference: chr 6
allele count: 1
allele frequency: 8.25082508250825e-6
allele num: 121200
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.729G>A
  hgvsp: ENST00000259951.7:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.375G>A
  hgvsp: ENST00000440587.2:c.375G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.151G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.58G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.411G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-298G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.628G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.729G>A
  hgvsp: ENST00000376861.1:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.96G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.729G>A
  hgvsp: ENST00000334668.4:c.729G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.365G>A
  hgvsp: ENST00000429294.1:c.365G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 192
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 267
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16426
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6914
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12087
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2019
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu243Glu
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: Other
population: European (Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: DP

6-29692934-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692934
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692934
    reference: chr 6
allele count: 1
allele frequency: 8.251778258214646e-6
allele num: 121186
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.373C>T
  hgvsp: ENSP00000416998.1:p.Thr125Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.66C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.737C>T
  hgvsp: ENSP00000366057.1:p.Thr246Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.636C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.737C>T
  hgvsp: ENSP00000259951.6:p.Thr246Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.383C>T
  hgvsp: ENSP00000404130.2:p.Thr128Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.419C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-290C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.159C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.737C>T
  hgvsp: ENSP00000334263.4:p.Thr246Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.104C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 106
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12069
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3776
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14627
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2018
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6913
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr246Ile
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: African
reference allele: C
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-29692935-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692935
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692935
    reference: chr 6
allele count: 5
allele frequency: 4.125821038386639e-5
allele num: 121188
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.738C>A
  hgvsp: ENST00000376861.1:c.738C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-289C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.738C>A
  hgvsp: ENST00000334668.4:c.738C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.637C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.374C>A
  hgvsp: ENST00000429294.1:c.374C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.420C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.738C>A
  hgvsp: ENST00000259951.7:c.738C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.105C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.160C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.384C>A
  hgvsp: ENST00000440587.2:c.384C>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.67C>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 16383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr246Thr
num of homozygotes: 0
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum

6-29692935-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692935
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692935
    reference: chr 6
allele count: 1
allele frequency: 8.251642076773278e-6
allele num: 121188
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.384C>T
  hgvsp: ENST00000440587.2:c.384C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.738C>T
  hgvsp: ENST00000334668.4:c.738C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.160C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.738C>T
  hgvsp: ENST00000259951.7:c.738C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.374C>T
  hgvsp: ENST00000429294.1:c.374C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.738C>T
  hgvsp: ENST00000376861.1:c.738C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.637C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.420C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-289C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.67C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.105C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1081
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 313
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12064
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14621
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16383
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6916
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 361
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3775
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2020
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr246Thr
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: C
site quality: DP
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD

6-29692956-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692956
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692956
    reference: chr 6
allele count: 1
allele frequency: 8.255184255712587e-6
allele num: 121136
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-268G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.658G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.126G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.88G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.441G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.759G>A
  hgvsp: ENST00000259951.7:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.759G>A
  hgvsp: ENST00000334668.4:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.405G>A
  hgvsp: ENST00000440587.2:c.405G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.181G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.759G>A
  hgvsp: ENST00000376861.1:c.759G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.395G>A
  hgvsp: ENST00000429294.1:c.395G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 362
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2021
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3779
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16277
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 457
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14454
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6910
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 714
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 444
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu253Glu
num of homozygotes: 0
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: Latino
population: Other
population: African
reference allele: G
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/6-29692963-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692963
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692963
    reference: chr 6
allele count: 14
allele frequency: 1.155973908017505e-4
allele num: 121110
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-261C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.766C>A
  hgvsp: ENSP00000259951.6:p.Pro256Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.412C>A
  hgvsp: ENSP00000404130.2:p.Pro138Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.448C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.188C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.766C>A
  hgvsp: ENSP00000366057.1:p.Pro256Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.95C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.766C>A
  hgvsp: ENSP00000334263.4:p.Pro256Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.133C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.402C>A
  hgvsp: ENSP00000416998.1:p.Pro135Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.665C>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3782
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 193
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16264
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 717
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 445
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 6907
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 352
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro256Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: South Asian
population: Other
reference allele: C
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: QD
site quality: MQRankSum

6-29692968-A-AGG
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692968
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692970
    reference: chr 6
allele count: 1
allele frequency: 8.258593066085262e-6
allele num: 121086
alternate allele: AGG
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.141_142dupGG
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.410_411dupGG
  hgvsp: ENSP00000416998.1:p.Asp138GlyfsTer36
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.673_674dupGG
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.774_775dupGG
  hgvsp: ENSP00000259951.6:p.Asp259GlyfsTer36
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.420_421dupGG
  hgvsp: ENSP00000404130.2:p.Asp141GlyfsTer36
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.196_197dupGG
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-253_611-252dupGG
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.456_457dupGG
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.774_775dupGG
  hgvsp: ENSP00000334263.4:p.Asp259GlyfsTer36
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.103_104dupGG
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.774_775dupGG
  hgvsp: ENSP00000366057.1:p.Asp259GlyfsTer36
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 11980
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 194
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3788
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16276
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6903
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 715
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2022
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 446
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1085
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Asp259GlyfsTer36
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Finnish)
reference allele: A
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: ReadPosRankSum

6-29692975-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692975
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692975
    reference: chr 6
allele count: 1
allele frequency: 8.258865892535638e-6
allele num: 121082
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.200G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-249G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.424G>A
  hgvsp: ENSP00000404130.2:p.Gly142Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.677G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.145G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.778G>A
  hgvsp: ENSP00000259951.6:p.Gly260Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.414G>A
  hgvsp: ENSP00000416998.1:p.Gly139Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.107G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.778G>A
  hgvsp: ENSP00000366057.1:p.Gly260Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.778G>A
  hgvsp: ENSP00000334263.4:p.Gly260Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.460G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14356
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 449
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2023
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16270
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 718
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 458
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11986
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly260Arg
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum

http://identifiers.org/exac.variant/6-29692979-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692979
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692979
    reference: chr 6
allele count: 4
allele frequency: 3.303819215012555e-5
allele num: 121072
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.428C>A
  hgvsp: ENSP00000404130.2:p.Thr143Asn
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.204C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.681C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.782C>A
  hgvsp: ENSP00000366057.1:p.Thr261Asn
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.149C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.782C>A
  hgvsp: ENSP00000259951.6:p.Thr261Asn
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.782C>A
  hgvsp: ENSP00000334263.4:p.Thr261Asn
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.418C>A
  hgvsp: ENSP00000416998.1:p.Thr140Asn
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.464C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-245C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.111C>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr261Asn
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: African
reference allele: C
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: QD

6-29692979-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692979
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692979
    reference: chr 6
allele count: 1
allele frequency: 8.259548037531387e-6
allele num: 121072
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.418C>G
  hgvsp: ENSP00000416998.1:p.Thr140Ser
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.782C>G
  hgvsp: ENSP00000366057.1:p.Thr261Ser
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.204C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.782C>G
  hgvsp: ENSP00000334263.4:p.Thr261Ser
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.428C>G
  hgvsp: ENSP00000404130.2:p.Thr143Ser
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.111C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.464C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-245C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.149C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.782C>G
  hgvsp: ENSP00000259951.6:p.Thr261Ser
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.681C>G
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2025
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14351
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16266
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6906
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 11993
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1088
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3791
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr261Ser
num of homozygotes: 0
population: East Asian
population: Other
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP

6-29692990-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692990
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692990
    reference: chr 6
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.793T>G
  hgvsp: ENSP00000366057.1:p.Trp265Gly
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-234T>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.429T>G
  hgvsp: ENSP00000416998.1:p.Trp144Gly
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.793T>G
  hgvsp: ENSP00000259951.6:p.Trp265Gly
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.439T>G
  hgvsp: ENSP00000404130.2:p.Trp147Gly
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.160T>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.793T>G
  hgvsp: ENSP00000334263.4:p.Trp265Gly
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.122T>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.215T>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.475T>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.692T>G
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp265Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum

6-29692990-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692990
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692990
    reference: chr 6
allele count: 1
allele frequency: 8.26296045347127e-6
allele num: 121022
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.429T>A
  hgvsp: ENSP00000416998.1:p.Trp144Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.215T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.793T>A
  hgvsp: ENSP00000259951.6:p.Trp265Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.439T>A
  hgvsp: ENSP00000404130.2:p.Trp147Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.793T>A
  hgvsp: ENSP00000366057.1:p.Trp265Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-234T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.692T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.793T>A
  hgvsp: ENSP00000334263.4:p.Trp265Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.160T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.122T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.475T>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2028
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 448
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12001
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16250
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6909
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14341
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3798
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp265Arg
num of homozygotes: 0
population: Latino
population: East Asian
population: South Asian
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: MQRankSum
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: ReadPosRankSum
site quality: ClippingRankSum

6-29692994-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692994
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692994
    reference: chr 6
allele count: 3
allele frequency: 2.478028150399789e-5
allele num: 121064
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-230C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.219C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.797C>T
  hgvsp: ENSP00000366057.1:p.Ala266Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.433C>T
  hgvsp: ENSP00000416998.1:p.Ala145Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.443C>T
  hgvsp: ENSP00000404130.2:p.Ala148Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.479C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.164C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.797C>T
  hgvsp: ENSP00000259951.6:p.Ala266Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.696C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.797C>T
  hgvsp: ENSP00000334263.4:p.Ala266Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.126C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 697
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12007
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 16255
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14361
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3804
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6919
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala266Val
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: C
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-29692995-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692995
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692995
    reference: chr 6
allele count: 1
allele frequency: 8.262004692818665e-6
allele num: 121036
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-229C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.798C>G
  hgvsp: ENST00000259951.7:c.798C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.798C>G
  hgvsp: ENST00000334668.4:c.798C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.434C>G
  hgvsp: ENST00000429294.1:c.434C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.798C>G
  hgvsp: ENST00000376861.1:c.798C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.480C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.127C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.220C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.444C>G
  hgvsp: ENST00000440587.2:c.444C>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.165C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.697C>G
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala266Ala
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: C
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: QD

6-29692995-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692995
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692995
    reference: chr 6
allele count: 2
allele frequency: 1.652400938563733e-5
allele num: 121036
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.434C>T
  hgvsp: ENST00000429294.1:c.434C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.220C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.798C>T
  hgvsp: ENST00000376861.1:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.165C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.127C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.444C>T
  hgvsp: ENST00000440587.2:c.444C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.480C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.798C>T
  hgvsp: ENST00000259951.7:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.798C>T
  hgvsp: ENST00000334668.4:c.798C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-229C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.697C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3806
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12019
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 366
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2035
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6925
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 155
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 424
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14354
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 311
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala266Ala
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP
site quality: ReadPosRankSum
site quality: BaseQRankSum

6-29692997-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29692997
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29692997
    reference: chr 6
allele count: 3
allele frequency: 2.477741621103751e-5
allele num: 121078
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-227C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.222C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.167C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.699C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.436C>T
  hgvsp: ENSP00000416998.1:p.Ala146Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.446C>T
  hgvsp: ENSP00000404130.2:p.Ala149Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.129C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.482C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.800C>T
  hgvsp: ENSP00000366057.1:p.Ala267Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.800C>T
  hgvsp: ENSP00000334263.4:p.Ala267Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.800C>T
  hgvsp: ENSP00000259951.6:p.Ala267Val
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 390
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 726
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14390
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2037
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3807
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 283
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16286
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12034
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6922
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala267Val
num of homozygotes: 0
population: Latino
population: Other
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

6-29693006-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693006
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693006
    reference: chr 6
allele count: 2
allele frequency: 1.650818806127839e-5
allele num: 121152
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.809T>G
  hgvsp: ENSP00000366057.1:p.Val270Gly
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.138T>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.809T>G
  hgvsp: ENSP00000334263.4:p.Val270Gly
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.445T>G
  hgvsp: ENSP00000416998.1:p.Val149Gly
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.231T>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.491T>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-218T>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.809T>G
  hgvsp: ENSP00000259951.6:p.Val270Gly
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.176T>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.708T>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.455T>G
  hgvsp: ENSP00000404130.2:p.Val152Gly
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 315
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3809
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6930
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14462
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16360
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12055
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 729
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Val270Gly
num of homozygotes: 0
population: East Asian
population: African
population: Other
population: Latino
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: DP

6-29693009-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693009
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693009
    reference: chr 6
allele count: 1
allele frequency: 8.253140319891718e-6
allele num: 121166
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.812C>G
  hgvsp: ENSP00000366057.1:p.Pro271Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.448C>G
  hgvsp: ENSP00000416998.1:p.Pro150Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.458C>G
  hgvsp: ENSP00000404130.2:p.Pro153Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.494C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.711C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.234C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.812C>G
  hgvsp: ENSP00000334263.4:p.Pro271Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.812C>G
  hgvsp: ENSP00000259951.6:p.Pro271Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.141C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.179C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-215C>G
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 368
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1091
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 699
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 730
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14490
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 114
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6936
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16365
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3815
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 456
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2043
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 242
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 310
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro271Arg
num of homozygotes: 0
population: Other
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

6-29693011-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693011
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693011
    reference: chr 6
allele count: 102794
allele frequency: 8.473802222442048e-1
allele num: 121308
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.236C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.496C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.181C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.460C>T
  hgvsp: ENSP00000404130.2:p.Pro154Ser
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.143C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.814C>T
  hgvsp: ENSP00000259951.6:p.Pro272Ser
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.450C>T
  hgvsp: ENSP00000416998.1:p.Pro151Ser
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.814C>T
  hgvsp: ENSP00000366057.1:p.Pro272Ser
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-213C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.713C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.814C>T
  hgvsp: ENSP00000334263.4:p.Pro272Ser
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.75e1
  variant carriers: 1453
genotype depth: GenotypeDepth
  all individuals: 2
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 7.5e0
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2011
  bin: 9.25e1
  variant carriers: 2004
genotype depth: GenotypeDepth
  all individuals: 4738
  bin: 7.25e1
  variant carriers: 4723
genotype depth: GenotypeDepth
  all individuals: 1227
  bin: 3.25e1
  variant carriers: 890
genotype depth: GenotypeDepth
  all individuals: 3418
  bin: 4.75e1
  variant carriers: 3356
genotype depth: GenotypeDepth
  all individuals: 5580
  bin: 6.25e1
  variant carriers: 5564
genotype depth: GenotypeDepth
  all individuals: 3946
  bin: 7.75e1
  variant carriers: 3938
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 1.25e1
  variant carriers: 138
genotype depth: GenotypeDepth
  all individuals: 4635
  bin: 5.25e1
  variant carriers: 4601
genotype depth: GenotypeDepth
  all individuals: 1071
  bin: 2.75e1
  variant carriers: 656
genotype depth: GenotypeDepth
  all individuals: 3327
  bin: 8.25e1
  variant carriers: 3323
genotype depth: GenotypeDepth
  all individuals: 5250
  bin: 6.75e1
  variant carriers: 5229
genotype depth: GenotypeDepth
  all individuals: 12144
  bin: 9.75e1
  variant carriers: 12127
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 2.25e1
  variant carriers: 485
genotype depth: GenotypeDepth
  all individuals: 5352
  bin: 5.75e1
  variant carriers: 5320
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 284
genotype depth: GenotypeDepth
  all individuals: 2382
  bin: 4.25e1
  variant carriers: 2266
genotype depth: GenotypeDepth
  all individuals: 2603
  bin: 8.75e1
  variant carriers: 2596
genotype quality: GenotypeQuality
hgvs: p.Pro272Ser
num of homozygotes: 43854
population: East Asian
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum

6-29693019-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693019
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693019
    reference: chr 6
allele count: 104
allele frequency: 8.575763572795039e-4
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.151G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.244G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.458G>A
  hgvsp: ENST00000429294.1:c.458G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.468G>A
  hgvsp: ENST00000440587.2:c.468G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.822G>A
  hgvsp: ENST00000259951.7:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.721G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.822G>A
  hgvsp: ENST00000376861.1:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.822G>A
  hgvsp: ENST00000334668.4:c.822G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-205G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.504G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.189G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2912
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3134
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1186
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4020
  bin: 7.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 5997
  bin: 5.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 4817
  bin: 6.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 6109
  bin: 5.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 6.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 3467
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4563
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 2430
  bin: 8.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3778
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 5469
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 1198
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 253
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3707
  bin: 3.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
hgvs: p.Glu274Glu
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
reference allele: G
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD

6-29693020-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693020
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693020
    reference: chr 6
allele count: 3
allele frequency: 2.473777953690877e-5
allele num: 121272
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.823G>A
  hgvsp: ENSP00000334263.4:p.Glu275Lys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.152G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.823G>A
  hgvsp: ENSP00000366057.1:p.Glu275Lys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.469G>A
  hgvsp: ENSP00000404130.2:p.Glu157Lys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.505G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.722G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.459G>A
  hgvsp: ENSP00000416998.1:p.Glu154Lys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.245G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.190G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.823G>A
  hgvsp: ENSP00000259951.6:p.Glu275Lys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-204G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3712
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1191
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2921
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3464
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu275Lys
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
reference allele: G
site quality: MQ
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum

6-29693022-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693022
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693022
    reference: chr 6
allele count: 1
allele frequency: 8.246470510621453e-6
allele num: 121264
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-202A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.154A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.471A>G
  hgvsp: ENST00000440587.2:c.471A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.825A>G
  hgvsp: ENST00000334668.4:c.825A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.507A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.825A>G
  hgvsp: ENST00000376861.1:c.825A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.192A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.461A>G
  hgvsp: ENST00000429294.1:c.461A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.825A>G
  hgvsp: ENST00000259951.7:c.825A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.247A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.724A>G
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1194
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2428
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2908
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4561
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3469
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3710
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu275Glu
num of homozygotes: 0
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: Latino
population: East Asian
reference allele: A
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: DP
site quality: FS
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: QD

6-29693031-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693031
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693031
    reference: chr 6
allele count: 2
allele frequency: 1.649430121892886e-5
allele num: 121254
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.834C>T
  hgvsp: ENST00000334668.4:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.516C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.256C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.201C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.480C>T
  hgvsp: ENST00000440587.2:c.480C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.834C>T
  hgvsp: ENST00000259951.7:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.470C>T
  hgvsp: ENST00000429294.1:c.470C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.834C>T
  hgvsp: ENST00000376861.1:c.834C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-193C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.733C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.163C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5670
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 316
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 148
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4560
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2894
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3460
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1164
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3716
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Tyr278Tyr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: South Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
reference allele: C
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

6-29693033-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693033
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693033
    reference: chr 6
allele count: 1
allele frequency: 8.247422680412371e-6
allele num: 121250
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.203C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.518C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.836C>G
  hgvsp: ENSP00000334263.4:p.Thr279Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.836C>G
  hgvsp: ENSP00000259951.6:p.Thr279Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.735C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.165C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.482C>G
  hgvsp: ENSP00000404130.2:p.Thr161Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.836C>G
  hgvsp: ENSP00000366057.1:p.Thr279Arg
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.258C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-191C>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.472C>G
  hgvsp: ENSP00000416998.1:p.Thr158Arg
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr279Arg
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: Other
population: Latino
population: African
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum
site quality: MQ
site quality: DP

6-29693033-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693033
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693033
    reference: chr 6
allele count: 5
allele frequency: 4.123711340206185e-5
allele num: 121250
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.836C>T
  hgvsp: ENSP00000334263.4:p.Thr279Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.203C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.165C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.472C>T
  hgvsp: ENSP00000416998.1:p.Thr158Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.836C>T
  hgvsp: ENSP00000366057.1:p.Thr279Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.482C>T
  hgvsp: ENSP00000404130.2:p.Thr161Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.518C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.735C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.258C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.836C>T
  hgvsp: ENSP00000259951.6:p.Thr279Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-191C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5472
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6118
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3449
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2889
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3719
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1761
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Thr279Ile
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/6-29693034-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693034
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693034
    reference: chr 6
allele count: 1
allele frequency: 8.24715060946443e-6
allele num: 121254
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.837A>C
  hgvsp: ENST00000376861.1:c.837A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.837A>C
  hgvsp: ENST00000334668.4:c.837A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.837A>C
  hgvsp: ENST00000259951.7:c.837A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.259A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.473A>C
  hgvsp: ENST00000429294.1:c.473A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.736A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.204A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.483A>C
  hgvsp: ENST00000440587.2:c.483A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.166A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.519A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-190A>C
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2884
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1133
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3451
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3720
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4558
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3772
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5671
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4014
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Thr279Thr
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: A
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: QD

6-29693049-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693049
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693049
    reference: chr 6
allele count: 13
allele frequency: 1.073670300627684e-4
allele num: 121080
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.852C>T
  hgvsp: ENST00000376861.1:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-175C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.852C>T
  hgvsp: ENST00000334668.4:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.498C>T
  hgvsp: ENST00000440587.2:c.498C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.274C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.488C>T
  hgvsp: ENST00000429294.1:c.488C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.751C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.181C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.219C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.852C>T
  hgvsp: ENST00000259951.7:c.852C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.534C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 505
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3325
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4821
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3679
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1764
  bin: 8.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 5471
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2427
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
hgvs: p.His284His
num of homozygotes: 0
population: Other
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: FS
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: MQRankSum

http://identifiers.org/exac.variant/6-29693059-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693059
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693059
    reference: chr 6
allele count: 1
allele frequency: 8.263097008758882e-6
allele num: 121020
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.862C>A
  hgvsp: ENSP00000334263.4:p.Pro288Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.544C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.862C>A
  hgvsp: ENSP00000366057.1:p.Pro288Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-165C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.284C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.761C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.191C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.498C>A
  hgvsp: ENSP00000416998.1:p.Pro167Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.508C>A
  hgvsp: ENSP00000404130.2:p.Pro170Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.862C>A
  hgvsp: ENSP00000259951.6:p.Pro288Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.229C>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 519
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1106
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4548
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 412
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3273
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2640
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro288Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
population: African
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ReadPosRankSum

6-29693066-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693066
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693066
    reference: chr 6
allele count: 1
allele frequency: 8.262141216517673e-6
allele num: 121034
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.869C>T
  hgvsp: ENSP00000334263.4:p.Pro290Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.869C>T
  hgvsp: ENSP00000259951.6:p.Pro290Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.551C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.198C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.515C>T
  hgvsp: ENSP00000404130.2:p.Pro172Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.869C>T
  hgvsp: ENSP00000366057.1:p.Pro290Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.505C>T
  hgvsp: ENSP00000416998.1:p.Pro169Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.768C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.236C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-158C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.291C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6121
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3774
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1759
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5466
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3661
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2635
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 173
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3248
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1141
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro290Leu
num of homozygotes: 0
population: African
population: East Asian
population: Latino
population: European (Non-Finnish)
population: South Asian
population: Other
population: European (Finnish)
reference allele: C
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQ

6-29693074-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693074
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693074
    reference: chr 6
allele count: 1
allele frequency: 8.262687356435807e-6
allele num: 121026
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.299C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.877C>T
  hgvsp: ENST00000334668.4:c.877C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.523C>T
  hgvsp: ENST00000440587.2:c.523C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.559C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.206C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.877C>T
  hgvsp: ENST00000259951.7:c.877C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000485513
  gene symbol: HLA-F
  hgvsc: ENST00000485513.1:n.776C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.513C>T
  hgvsp: ENST00000429294.1:c.513C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-150C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.244C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.877C>T
  hgvsp: ENST00000376861.1:c.877C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3657
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 520
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4017
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3239
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2629
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5991
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Leu293Leu
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: FS

6-29693082-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693082
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693082
    reference: chr 6
allele count: 1
allele frequency: 8.264189613566494e-6
allele num: 121004
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.521G>C
  hgvsp: ENSP00000416998.1:p.Trp174Cys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.885G>C
  hgvsp: ENSP00000366057.1:p.Trp295Cys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-142G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.531G>C
  hgvsp: ENSP00000404130.2:p.Trp177Cys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.885G>C
  hgvsp: ENSP00000259951.6:p.Trp295Cys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.567G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.307G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.214G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.885G>C
  hgvsp: ENSP00000334263.4:p.Trp295Cys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.252G>C
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5668
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5464
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 305
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2599
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 499
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3654
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3237
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Trp295Cys
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: QD
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

6-29693083-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693083
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693083
    reference: chr 6
allele count: 1
allele frequency: 8.263643275047103e-6
allele num: 121012
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522G>A
  hgvsp: ENSP00000416998.1:p.Glu175Lys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532G>A
  hgvsp: ENSP00000404130.2:p.Glu178Lys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886G>A
  hgvsp: ENSP00000366057.1:p.Glu296Lys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886G>A
  hgvsp: ENSP00000334263.4:p.Glu296Lys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886G>A
  hgvsp: ENSP00000259951.6:p.Glu296Lys
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-141G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1336
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3234
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3653
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2602
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5669
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 490
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4819
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5990
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Glu296Lys
num of homozygotes: 0
population: East Asian
population: Latino
population: South Asian
population: African
population: Other
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: FS
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD

6-29693093-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693093
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693093
    reference: chr 6
allele count: 1
allele frequency: 8.263233568560049e-6
allele num: 121018
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532+10G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308+10G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-131G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886+10G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886+10G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522+10G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568+10G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886+10G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253+10G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215+10G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 304
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1331
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2590
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 510
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3126
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4015
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 183
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3652
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4539
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1143
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: Latino
population: South Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: G
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum

6-29693094-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693094
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693094
    reference: chr 6
allele count: 1
allele frequency: 8.263370132874991e-6
allele num: 121016
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886+11A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886+11A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522+11A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308+11A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532+11A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253+11A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886+11A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568+11A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215+11A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-130A>G
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 6120
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 526
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 182
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5465
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 338
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5992
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1299
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3649
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2575
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3224
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4540
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47166
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 46
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: East Asian
population: Other
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum

6-29693099-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693099
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693099
    reference: chr 6
allele count: 1
allele frequency: 8.263916435277007e-6
allele num: 121008
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568+16G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-125G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253+16G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308+16G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886+16G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886+16G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532+16G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886+16G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215+16G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522+16G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3644
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 534
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3773
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6119
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4820
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1292
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3218
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 345
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1196
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5463
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3125
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1760
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4016
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5993
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2577
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2431
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5667
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1613
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47166
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1706
  bin: 6.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: African
population: European (Non-Finnish)
population: South Asian
population: Latino
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum

6-29693113-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693113
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693113
    reference: chr 6
allele count: 21508
allele frequency: 1.778755499685732e-1
allele num: 120916
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-111C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308+30C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886+30C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522+30C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568+30C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532+30C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253+30C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886+30C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886+30C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215+30C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 11
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5486
  bin: 5.25e1
  variant carriers: 1555
genotype depth: GenotypeDepth
  all individuals: 565
  bin: 1.75e1
  variant carriers: 191
genotype depth: GenotypeDepth
  all individuals: 4347
  bin: 7.25e1
  variant carriers: 1602
genotype depth: GenotypeDepth
  all individuals: 580
  bin: 1.25e1
  variant carriers: 73
genotype depth: GenotypeDepth
  all individuals: 2853
  bin: 3.25e1
  variant carriers: 522
genotype depth: GenotypeDepth
  all individuals: 1491
  bin: 9.25e1
  variant carriers: 650
genotype depth: GenotypeDepth
  all individuals: 5741
  bin: 5.75e1
  variant carriers: 1638
genotype depth: GenotypeDepth
  all individuals: 4044
  bin: 4.25e1
  variant carriers: 1108
genotype depth: GenotypeDepth
  all individuals: 4871
  bin: 4.75e1
  variant carriers: 1340
genotype depth: GenotypeDepth
  all individuals: 1266
  bin: 2.25e1
  variant carriers: 290
genotype depth: GenotypeDepth
  all individuals: 3209
  bin: 3.75e1
  variant carriers: 831
genotype depth: GenotypeDepth
  all individuals: 164
  bin: 7.5e0
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 4687
  bin: 9.75e1
  variant carriers: 2074
genotype depth: GenotypeDepth
  all individuals: 5006
  bin: 6.75e1
  variant carriers: 1774
genotype depth: GenotypeDepth
  all individuals: 2871
  bin: 8.25e1
  variant carriers: 1148
genotype depth: GenotypeDepth
  all individuals: 2448
  bin: 2.75e1
  variant carriers: 391
genotype depth: GenotypeDepth
  all individuals: 5544
  bin: 6.25e1
  variant carriers: 1802
genotype depth: GenotypeDepth
  all individuals: 3476
  bin: 7.75e1
  variant carriers: 1321
genotype depth: GenotypeDepth
  all individuals: 2046
  bin: 8.75e1
  variant carriers: 841
genotype quality: GenotypeQuality
  all individuals: 165
  bin: 3.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 1035
  bin: 7.75e1
  variant carriers: 29
genotype quality: GenotypeQuality
  all individuals: 767
  bin: 8.75e1
  variant carriers: 21
genotype quality: GenotypeQuality
  all individuals: 2452
  bin: 6.25e1
  variant carriers: 15
num of homozygotes: 2363
population: African
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: South Asian
population: East Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: QD

6-29693114-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693114
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693114
    reference: chr 6
allele count: 18
allele frequency: 1.488169056004762e-4
allele num: 120954
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308+31G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532+31G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-110G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253+31G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886+31G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886+31G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215+31G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522+31G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568+31G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886+31G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3260
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 767
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3021
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1262
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3436
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3917
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1425
  bin: 9.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3304
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1984
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4902
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2753
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4649
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 7.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1737
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1364
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 149
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: European (Finnish)
reference allele: G
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

6-29693117-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693117
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693117
    reference: chr 6
allele count: 24
allele frequency: 1.984619201190772e-4
allele num: 120930
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522+34G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886+34G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568+34G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253+34G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-107G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532+34G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886+34G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886+34G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308+34G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215+34G>C
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 793
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4267
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5441
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3255
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4908
  bin: 6.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 3909
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5318
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3252
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5599
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2979
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4643
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 182
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 56
  bin: 5.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: South Asian
population: Latino
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: FS
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

6-29693118-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693118
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693118
    reference: chr 6
allele count: 1
allele frequency: 8.268836409340477e-6
allele num: 120936
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886+35G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522+35G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886+35G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-106G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568+35G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253+35G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886+35G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532+35G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308+35G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215+35G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 332
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3352
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: Latino
population: Other
population: East Asian
reference allele: G
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: ClippingRankSum
site quality: DP

6-29693118-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693118
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693118
    reference: chr 6
allele count: 2
allele frequency: 1.653767281868095e-5
allele num: 120936
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886+35G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253+35G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568+35G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886+35G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532+35G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308+35G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522+35G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-106G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215+35G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886+35G>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2943
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3244
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 769
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3241
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5321
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1257
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1985
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1424
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4640
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 987
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1367
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1010
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
reference allele: G
site quality: DP
site quality: MQ
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: QD

6-29693123-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693123
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693123
    reference: chr 6
allele count: 1
allele frequency: 8.272119647938589e-6
allele num: 120888
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253+40T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308+40T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522+40T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532+40T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886+40T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886+40T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886+40T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568+40T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-101T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215+40T>C
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3898
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 8.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2755
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3222
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 765
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1388
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3115
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4512
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1008
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 443
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: DP

6-29693124-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693124
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693124
    reference: chr 6
allele count: 2
allele frequency: 1.655382476121108e-5
allele num: 120818
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215+41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886+41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522+41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886+41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308+41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568+41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532+41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-100G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253+41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886+41G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1419
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3221
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3109
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3894
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5597
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 754
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5438
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4270
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2741
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 453
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3123
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 199
  bin: 4.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: African
reference allele: G
site quality: DP
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: QD

6-29693126-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693126
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693126
    reference: chr 6
allele count: 1
allele frequency: 8.275268532463878e-6
allele num: 120842
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886+43C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886+43C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-98C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568+43C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532+43C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308+43C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253+43C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522+43C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886+43C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215+43C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 753
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4907
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3067
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3891
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1560
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5598
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3438
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4637
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5439
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3212
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2961
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 984
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1510
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Finnish)
population: Latino
population: South Asian
population: African
population: European (Non-Finnish)
population: East Asian
reference allele: C
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQ

6-29693134-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693134
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693134
    reference: chr 6
allele count: 1
allele frequency: 8.283357078956959e-6
allele num: 120724
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.886+51A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.253+51A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.215+51A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.308+51A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.886+51A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.522+51A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.532+51A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.568+51A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-90A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.886+51A>G
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 746
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2867
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3878
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4906
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 254
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1986
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4639
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3180
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5440
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4271
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1001
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4513
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1423
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5319
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3439
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5600
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2754
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2501
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 324
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 586
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 985
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: East Asian
population: Latino
population: European (Finnish)
population: African
population: South Asian
population: European (Non-Finnish)
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD

6-29693173-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693173
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693173
    reference: chr 6
allele count: 1
allele frequency: 8.377594960038872e-6
allele num: 119366
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.216-51C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.309-56C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.887-51C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.254-51C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-51C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.533-51C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.887-51C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.887-51C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.569-51C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.523-51C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1745
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4330
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 702
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3908
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1367
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1570
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3929
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1461
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51520
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 193
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 242
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1943
  bin: 6.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff

6-29693180-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693180
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693180
    reference: chr 6
allele count: 1
allele frequency: 8.379841453399702e-6
allele num: 119334
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.887-44G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-44G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.216-44G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.887-44G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.523-44G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.569-44G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.533-44G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.309-49G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.887-44G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.254-44G>C
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2131
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1858
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1342
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3030
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1617
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3928
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3511
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4681
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3907
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15039
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4552
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4331
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 797
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 676
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 627
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum

6-29693183-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693183
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693183
    reference: chr 6
allele count: 2419
allele frequency: 2.027185572539555e-2
allele num: 119328
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.523-41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.887-41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.533-41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.254-41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.309-46G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.569-41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.887-41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.887-41G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.216-41G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1366
  bin: 4.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 857
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 4546
  bin: 7.25e1
  variant carriers: 57
genotype depth: GenotypeDepth
  all individuals: 1849
  bin: 1.25e1
  variant carriers: 42
genotype depth: GenotypeDepth
  all individuals: 2128
  bin: 5.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 3010
  bin: 5.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 1663
  bin: 2.25e1
  variant carriers: 54
genotype depth: GenotypeDepth
  all individuals: 15314
  bin: 9.75e1
  variant carriers: 1657
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 2.75e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 6.75e1
  variant carriers: 41
genotype depth: GenotypeDepth
  all individuals: 4295
  bin: 8.25e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 3877
  bin: 6.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 665
  bin: 3.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 884
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 1.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 3483
  bin: 9.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 4653
  bin: 7.75e1
  variant carriers: 60
genotype depth: GenotypeDepth
  all individuals: 3845
  bin: 8.75e1
  variant carriers: 79
genotype quality: GenotypeQuality
  all individuals: 185
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 121
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1619
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 265
  bin: 4.25e1
  variant carriers: 1
num of homozygotes: 48
population: European (Finnish)
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: DP

6-29693186-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693186
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693186
    reference: chr 6
allele count: 4
allele frequency: 3.353510286892805e-5
allele num: 119278
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.254-38T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.887-38T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.523-38T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.216-38T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.887-38T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.533-38T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.569-38T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.309-43T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-38T>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.887-38T>C
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 874
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 107
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1716
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1853
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3127
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1348
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1405
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1706
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3957
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1679
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 138
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 271
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Latino
population: Other
population: South Asian
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
reference allele: T
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: DP
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD

6-29693195-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693195
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693195
    reference: chr 6
allele count: 2
allele frequency: 1.67768345468577e-5
allele num: 119212
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-29G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.887-29G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.887-29G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.533-29G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.309-34G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.887-29G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.523-29G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.569-29G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.254-29G>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.216-29G>C
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1924
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 664
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1407
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1792
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1338
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

6-29693196-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693196
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693196
    reference: chr 6
allele count: 2
allele frequency: 1.677542735401184e-5
allele num: 119222
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.523-28G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-28G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.569-28G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.216-28G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.887-28G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.887-28G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.254-28G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.887-28G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.533-28G>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.309-33G>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 897
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3958
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1951
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1347
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1789
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1406
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1539
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14137
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 187
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 584
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: African
population: South Asian
population: Latino
population: European (Finnish)
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: ReadPosRankSum

6-29693202-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693202
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693202
    reference: chr 6
allele count: 1
allele frequency: 8.382651264942076e-6
allele num: 119294
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.216-22T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.533-22T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-22T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.569-22T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.309-27T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.254-22T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.523-22T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.887-22T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.887-22T>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.887-22T>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1729
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4417
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1446
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 688
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 668
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1361
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 891
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2091
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4792
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14136
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3959
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4028
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 516
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 260
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2753
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 137
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: QD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum

6-29693205-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693205
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693205
    reference: chr 6
allele count: 36
allele frequency: 3.018412315122246e-4
allele num: 119268
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.309-24C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.887-19C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.533-19C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.887-19C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.254-19C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-19C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.887-19C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.523-19C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.569-19C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.216-19C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1497
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4791
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3960
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2209
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1670
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3507
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3128
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 894
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1236
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14143
  bin: 9.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 4027
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1648
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 652
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: DP

6-29693206-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693206
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693206
    reference: chr 6
allele count: 3
allele frequency: 2.514415984980555e-5
allele num: 119312
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.887-18C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.523-18C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.216-18C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.309-23C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.569-18C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-18C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.533-18C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.887-18C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.887-18C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.254-18C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 889
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1197
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4029
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1650
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1527
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 683
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14123
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2931
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 7.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: African
population: Other
population: East Asian
population: South Asian
reference allele: C
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum

http://identifiers.org/exac.variant/6-29693209-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693209
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693209
    reference: chr 6
allele count: 1
allele frequency: 8.381808123648433e-6
allele num: 119306
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.523-15C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.533-15C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.611-15C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.216-15C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.887-15C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.569-15C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.887-15C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.309-20C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.254-15C>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.887-15C>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 888
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1582
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 93
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4795
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 903
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2322
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14122
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1600
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 689
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1116
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51453
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 233
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: FS
site quality: DP
site quality: QD
site quality: BaseQRankSum

6-29693226-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693226
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693226
    reference: chr 6
allele count: 1
allele frequency: 8.373105584861425e-6
allele num: 119430
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.535C>T
  hgvsp: ENSP00000404130.2:p.Gln179Ter
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.256C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.889C>T
  hgvsp: ENSP00000259951.6:p.Gln297Ter
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.889C>T
  hgvsp: ENSP00000334263.4:p.Gln297Ter
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.613C>T
  hgvsp: ENSP00000397376.2:p.Gln205Ter
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.218C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.889C>T
  hgvsp: ENSP00000366057.1:p.Gln297Ter
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.309-3C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.571C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: stop_gained
  consequence: splice_region_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.525C>T
  hgvsp: ENSP00000416998.1:p.Gln176Ter
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: stop gained
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3508
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 736
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3007
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4416
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 810
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14123
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1083
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1975
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 562
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4536
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3962
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4709
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln297Ter
num of homozygotes: 0
population: European (Non-Finnish)
population: East Asian
population: Latino
population: South Asian
population: European (Finnish)
population: African
population: Other
reference allele: C
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: DP

6-29693233-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693233
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693233
    reference: chr 6
allele count: 77
allele frequency: 6.440065571576729e-4
allele num: 119564
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.896C>T
  hgvsp: ENSP00000334263.4:p.Pro299Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.263C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.896C>T
  hgvsp: ENSP00000366057.1:p.Pro299Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.313C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.225C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.532C>T
  hgvsp: ENSP00000416998.1:p.Pro178Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.542C>T
  hgvsp: ENSP00000404130.2:p.Pro181Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  hgvsc: ENST00000475996.1:n.3C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.578C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.896C>T
  hgvsp: ENSP00000259951.6:p.Pro299Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.620C>T
  hgvsp: ENSP00000397376.2:p.Pro207Leu
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3254
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14141
  bin: 9.75e1
  variant carriers: 72
genotype depth: GenotypeDepth
  all individuals: 2151
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 351
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2211
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3129
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3503
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 749
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1408
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 778
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4533
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4707
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3961
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4413
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4790
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4030
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Pro299Leu
num of homozygotes: 2
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

http://identifiers.org/exac.variant/6-29693236-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693236
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693236
    reference: chr 6
allele count: 1
allele frequency: 8.357151214294072e-6
allele num: 119658
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.899A>C
  hgvsp: ENSP00000366057.1:p.Gln300Pro
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.581A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.545A>C
  hgvsp: ENSP00000404130.2:p.Gln182Pro
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.899A>C
  hgvsp: ENSP00000259951.6:p.Gln300Pro
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  hgvsc: ENST00000475996.1:n.6A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.623A>C
  hgvsp: ENSP00000397376.2:p.Gln208Pro
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.316A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.266A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.535A>C
  hgvsp: ENSP00000416998.1:p.Gln179Pro
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.899A>C
  hgvsp: ENSP00000334263.4:p.Gln300Pro
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.228A>C
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3345
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 108
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 775
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2243
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 766
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gln300Pro
num of homozygotes: 0
population: European (Finnish)
population: East Asian
population: Other
population: South Asian
population: Latino
population: African
population: European (Non-Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: DP

http://identifiers.org/exac.variant/6-29693250-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693250
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693250
    reference: chr 6
allele count: 1
allele frequency: 8.353521009105338e-6
allele num: 119710
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.913A>C
  hgvsp: ENSP00000259951.6:p.Ile305Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.549A>C
  hgvsp: ENSP00000416998.1:p.Ile184Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.637A>C
  hgvsp: ENSP00000397376.2:p.Ile213Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.913A>C
  hgvsp: ENSP00000366057.1:p.Ile305Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  hgvsc: ENST00000475996.1:n.20A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.913A>C
  hgvsp: ENSP00000334263.4:p.Ile305Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.330A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.559A>C
  hgvsp: ENSP00000404130.2:p.Ile187Leu
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.242A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.280A>C
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.595A>C
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 695
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 681
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 813
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3477
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 513
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2493
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile305Leu
num of homozygotes: 0
population: Other
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: Latino
population: African
population: European (Finnish)
reference allele: A
site quality: FS
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQ
site quality: QD

6-29693252-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693252
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693252
    reference: chr 6
allele count: 3
allele frequency: 2.505637684790779e-5
allele num: 119730
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.244C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.915C>T
  hgvsp: ENST00000259951.7:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.597C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  hgvsc: ENST00000475996.1:n.22C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.551C>T
  hgvsp: ENST00000429294.1:c.551C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.915C>T
  hgvsp: ENST00000376861.1:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.639C>T
  hgvsp: ENST00000434407.2:c.639C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.561C>T
  hgvsp: ENST00000440587.2:c.561C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.332C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.915C>T
  hgvsp: ENST00000334668.4:c.915C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.282C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 2213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 488
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2505
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3488
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 821
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 696
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ile305Ile
num of homozygotes: 0
population: South Asian
population: East Asian
population: European (Finnish)
population: Latino
population: African
population: European (Non-Finnish)
population: Other
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

6-29693253-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693253
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693253
    reference: chr 6
allele count: 1
allele frequency: 8.349336227769892e-6
allele num: 119770
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.916G>A
  hgvsp: ENSP00000366057.1:p.Val306Met
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.552G>A
  hgvsp: ENSP00000416998.1:p.Val185Met
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.916G>A
  hgvsp: ENSP00000334263.4:p.Val306Met
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  hgvsc: ENST00000475996.1:n.23G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.333G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.562G>A
  hgvsp: ENSP00000404130.2:p.Val188Met
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.916G>A
  hgvsp: ENSP00000259951.6:p.Val306Met
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.245G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.640G>A
  hgvsp: ENSP00000397376.2:p.Val214Met
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.598G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.283G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 673
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2523
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 904
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 149
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3506
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 826
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val306Met
num of homozygotes: 0
population: Other
population: European (Finnish)
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
reference allele: G
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: VQSLOD

6-29693257-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693257
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693257
    reference: chr 6
allele count: 1
allele frequency: 8.344737808338063e-6
allele num: 119836
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.920G>A
  hgvsp: ENSP00000259951.6:p.Gly307Asp
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.920G>A
  hgvsp: ENSP00000366057.1:p.Gly307Asp
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.556G>A
  hgvsp: ENSP00000416998.1:p.Gly186Asp
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.920G>A
  hgvsp: ENSP00000334263.4:p.Gly307Asp
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.287G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.644G>A
  hgvsp: ENSP00000397376.2:p.Gly215Asp
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  hgvsc: ENST00000475996.1:n.27G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.337G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.566G>A
  hgvsp: ENSP00000404130.2:p.Gly189Asp
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.602G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.249G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 832
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 439
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 652
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2560
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 905
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3555
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14097
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly307Asp
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

6-29693266-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693266
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693266
    reference: chr 6
allele count: 2
allele frequency: 1.66786196774355e-5
allele num: 119914
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.611C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.575C>T
  hgvsp: ENSP00000404130.2:p.Ala192Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.929C>T
  hgvsp: ENSP00000334263.4:p.Ala310Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.346C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.929C>T
  hgvsp: ENSP00000259951.6:p.Ala310Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.258C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  hgvsc: ENST00000475996.1:n.36C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.929C>T
  hgvsp: ENSP00000366057.1:p.Ala310Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.653C>T
  hgvsp: ENSP00000397376.2:p.Ala218Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.565C>T
  hgvsp: ENSP00000416998.1:p.Ala189Val
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.296C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 102
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4712
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3639
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14097
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 638
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 827
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala310Val
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Latino
population: Other
population: South Asian
reference allele: C
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum

6-29693281-TTGGAGCTGTGGTCAC-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693281
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693266
    reference: chr 6
allele count: 2
allele frequency: 1.667973245709139e-5
allele num: 119906
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsp: ENSP00000366057.1:p.Thr320_Val324del
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsp: ENSP00000397376.2:p.Thr228_Val232del
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsp: ENSP00000416998.1:p.Thr199_Val203del
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsp: ENSP00000404130.2:p.Thr202_Val206del
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: inframe_deletion
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsp: ENSP00000334263.4:p.Thr320_Val324del
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: inframe_deletion
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsp: ENSP00000259951.6:p.Thr320_Val324del
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: inframe deletion
filter: VQSRTrancheINDEL99.00to99.50
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2667
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3613
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4541
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 830
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 104
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 642
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14098
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 367
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Thr320_Val324del
num of homozygotes: 0
population: South Asian
population: East Asian
population: Latino
population: European (Non-Finnish)
population: Other
population: African
population: European (Finnish)
reference allele: TTGGAGCTGTGGTCAC
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: FS
site quality: QD
site quality: MQRankSum
site quality: ClippingRankSum

6-29693300-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693300
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693300
    reference: chr 6
allele count: 1
allele frequency: 8.348639171814994e-6
allele num: 119780
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.963A>G
  hgvsp: ENST00000259951.7:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.645A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.380A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.609A>G
  hgvsp: ENST00000440587.2:c.609A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.963A>G
  hgvsp: ENST00000334668.4:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.687A>G
  hgvsp: ENST00000434407.2:c.687A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  hgvsc: ENST00000475996.1:n.70A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.963A>G
  hgvsp: ENST00000376861.1:c.963A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.599A>G
  hgvsp: ENST00000429294.1:c.599A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.292A>G
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.330A>G
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 690
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3497
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 443
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2645
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 640
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3971
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14096
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Gly321Gly
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: QD
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: BaseQRankSum

6-29693301-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693301
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693301
    reference: chr 6
allele count: 4
allele frequency: 3.341352579524191e-5
allele num: 119712
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.331G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.646G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  hgvsc: ENST00000475996.1:n.71G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.610G>A
  hgvsp: ENSP00000404130.2:p.Ala204Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.964G>A
  hgvsp: ENSP00000259951.6:p.Ala322Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.964G>A
  hgvsp: ENSP00000366057.1:p.Ala322Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.381G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.688G>A
  hgvsp: ENSP00000397376.2:p.Ala230Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.964G>A
  hgvsp: ENSP00000334263.4:p.Ala322Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.293G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.600G>A
  hgvsp: ENSP00000416998.1:p.Ala201Thr
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 693
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 166
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4793
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 450
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3468
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2639
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14095
  bin: 9.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4542
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 845
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Ala322Thr
num of homozygotes: 0
population: European (Finnish)
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: East Asian
reference allele: G
site quality: BaseQRankSum
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: MQ
site quality: DP

6-29693309-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693309
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693309
    reference: chr 6
allele count: 1
allele frequency: 8.357011532675915e-6
allele num: 119660
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.608C>T
  hgvsp: ENST00000429294.1:c.608C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.696C>T
  hgvsp: ENST00000434407.2:c.696C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.972C>T
  hgvsp: ENST00000259951.7:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.654C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.339C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  hgvsc: ENST00000475996.1:n.79C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.389C>T
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.618C>T
  hgvsp: ENST00000440587.2:c.618C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.972C>T
  hgvsp: ENST00000334668.4:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.972C>T
  hgvsp: ENST00000376861.1:c.972C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.301C>T
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 75
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14091
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 181
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3131
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3432
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2642
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4033
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 454
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4711
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 692
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3505
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Val324Val
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: Latino
population: African
population: Other
reference allele: C
site quality: DP
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum

6-29693310-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693310
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693310
    reference: chr 6
allele count: 22
allele frequency: 1.838081711086975e-4
allele num: 119690
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.697G>A
  hgvsp: ENSP00000397376.2:p.Ala233Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.302G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.973G>A
  hgvsp: ENSP00000366057.1:p.Ala325Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.609G>A
  hgvsp: ENSP00000416998.1:p.Ala204Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  hgvsc: ENST00000475996.1:n.80G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.619G>A
  hgvsp: ENSP00000404130.2:p.Ala207Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.973G>A
  hgvsp: ENSP00000334263.4:p.Ala325Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.340G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.973G>A
  hgvsp: ENSP00000259951.6:p.Ala325Thr
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.390G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.655G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 455
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3970
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3424
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4035
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 666
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 694
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4794
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 836
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14097
  bin: 9.75e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3502
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2638
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3132
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 902
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4710
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4545
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4422
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1412
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
hgvs: p.Ala325Thr
num of homozygotes: 0
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: East Asian
population: Latino
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ReadPosRankSum

6-29693321-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 29693321
    reference: chr 6
  end: Position
    type: ExactPosition
    position: 29693321
    reference: chr 6
allele count: 1
allele frequency: 8.371002846140968e-6
allele num: 119460
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000475996
  gene symbol: HLA-F
  hgvsc: ENST00000475996.1:n.91G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000404130
  ensembl transcript: ENST00000440587
  gene symbol: HLA-F
  hgvsc: ENST00000440587.2:c.630G>A
  hgvsp: ENSP00000404130.2:p.Met210Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000259951
  ensembl transcript: ENST00000259951
  gene symbol: HLA-F
  hgvsc: ENST00000259951.7:c.984G>A
  hgvsp: ENSP00000259951.6:p.Met328Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000392251
  ensembl transcript: ENST00000444621
  gene symbol: HLA-F
  hgvsc: ENST00000444621.1:c.11G>A
  hgvsp: ENSP00000392251.1:p.Met4Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000334263
  ensembl transcript: ENST00000334668
  gene symbol: HLA-F
  hgvsc: ENST00000334668.4:c.984G>A
  hgvsp: ENSP00000334263.4:p.Met328Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000606273
  gene symbol: HLA-F
  hgvsc: ENST00000606273.1:n.401G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000366057
  ensembl transcript: ENST00000376861
  gene symbol: HLA-F
  hgvsc: ENST00000376861.1:c.984G>A
  hgvsp: ENSP00000366057.1:p.Met328Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000416998
  ensembl transcript: ENST00000429294
  gene symbol: HLA-F
  hgvsc: ENST00000429294.1:c.620G>A
  hgvsp: ENSP00000416998.1:p.Met207Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000484704
  gene symbol: HLA-F
  hgvsc: ENST00000484704.1:n.666G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000204642
  ensembl protein: ENSP00000397376
  ensembl transcript: ENST00000434407
  gene symbol: HLA-F
  hgvsc: ENST00000434407.2:c.708G>A
  hgvsp: ENSP00000397376.2:p.Met236Ile
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000489502
  gene symbol: HLA-F
  hgvsc: ENST00000489502.1:n.313G>A
  variant of: http://identifiers.org/hgnc/4963
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000204642
  ensembl transcript: ENST00000465459
  gene symbol: HLA-F
  hgvsc: ENST00000465459.1:n.351G>A
  variant of: http://identifiers.org/hgnc/4963
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4714
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14086
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 723
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3326
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4544
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 901
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4423
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4796
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3972
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 691
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 828
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4034
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2212
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
hgvs: p.Met328Ile
num of homozygotes: 0
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: South Asian
population: Other
reference allele: G
site quality: MQRankSum
site quality: BaseQRankSum

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5929
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2904
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 90
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15606
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15593
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3863
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10336
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.501411326647048e-5
allele num: 66604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.27e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.6e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.24e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.33e-1

FS
type: SiteQuality
SIO_000300: 7.12e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-3

MQ
type: SiteQuality
SIO_000300: 5.96e1

MQRankSum
type: SiteQuality
SIO_000300: 6.74e-1

QD
type: SiteQuality
SIO_000300: 1.572e1

DP
type: SiteQuality
SIO_000300: 1.970054e6

GenotypeQuality
all individuals: 5300
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 103
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 274
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15512
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3863
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2904
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6935
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3976
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5934
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15599
bin: 9.75e1
variant carriers: 1

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66594
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.680542110358181e-5
allele num: 10330
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.005e1

FS
type: SiteQuality
SIO_000300: 8.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.02e0

DP
type: SiteQuality
SIO_000300: 1.969127e6

MQRankSum
type: SiteQuality
SIO_000300: 6.99e-1

MQ
type: SiteQuality
SIO_000300: 5.989e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.82e0

VQSLOD
type: SiteQuality
SIO_000300: 1.22e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -9.89e-1

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2904
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15498
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15604
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5929
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3863
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.904162633107454e-4
allele num: 10330
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 4.24e0

QD
type: SiteQuality
SIO_000300: 1.319e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -4.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

DP
type: SiteQuality
SIO_000300: 1.969282e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

GenotypeQuality
all individuals: 15604
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 55
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6929
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 3975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5929
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 111
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2904
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3863
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15498
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5299
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 2.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10330
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.969282e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.944e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.61e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.61e-1

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

VQSLOD
type: SiteQuality
SIO_000300: 4.24e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.8e-3

QD
type: SiteQuality
SIO_000300: 1.319e1

GenotypeQuality
all individuals: 182
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2905
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3865
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5297
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 63
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6916
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15607
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 15133
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 363
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5928
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66568
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10306
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.982e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.494e0

MQRankSum
type: SiteQuality
SIO_000300: -8.100000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e0

DP
type: SiteQuality
SIO_000300: 1.965422e6

MQ
type: SiteQuality
SIO_000300: 5.846e1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 9.85e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.44e-1

GenotypeQuality
all individuals: 5924
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 166
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 124
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5296
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3867
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2904
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 196
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15624
bin: 9.75e1
variant carriers: 14

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15108
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 11
allele frequency: 1.653041596537629e-4
allele num: 66544
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10304
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

VQSLOD
type: SiteQuality
SIO_000300: 5.78e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.389e0

FS
type: SiteQuality
SIO_000300: 1.094e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.07e-1

DP
type: SiteQuality
SIO_000300: 1.965334e6

MQ
type: SiteQuality
SIO_000300: 5.797e1

QD
type: SiteQuality
SIO_000300: 1.236e1

MQRankSum
type: SiteQuality
SIO_000300: 3.41e-1

GenotypeQuality
all individuals: 15020
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5931
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 140
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2904
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6905
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variant carriers: 0

GenotypeQuality
all individuals: 3867
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
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variant carriers: 0

GenotypeQuality
all individuals: 3970
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variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 29
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15627
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 73
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5297
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502945773716484e-5
allele num: 66536
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 7.73e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.997e0

MQRankSum
type: SiteQuality
SIO_000300: 1.9e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.15e0

MQ
type: SiteQuality
SIO_000300: 5.802e1

VQSLOD
type: SiteQuality
SIO_000300: 3.86e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 1.964756e6

QD
type: SiteQuality
SIO_000300: 1.493e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.494e0

GenotypeQuality
all individuals: 170
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 5933
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2907
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 15025
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5302
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15641
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 6907
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 159
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3970
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503171692270691e-5
allele num: 66526
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10294
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 4.92e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.615e0

DP
type: SiteQuality
SIO_000300: 1.965308e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

QD
type: SiteQuality
SIO_000300: 1.94e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.99e-1

MQ
type: SiteQuality
SIO_000300: 5.818e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.067e0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15022
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15643
bin: 9.75e1
variant carriers: 4

GenotypeQuality
all individuals: 368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5936
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 3.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.509786236132407e-5
allele num: 66522
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.155535012710885e-4
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.622e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e0

DP
type: SiteQuality
SIO_000300: 1.965725e6

MQ
type: SiteQuality
SIO_000300: 5.859e1

QD
type: SiteQuality
SIO_000300: 1.23e1

GenotypeQuality
all individuals: 3975
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 65
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6910
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15643
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 368
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5305
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 167
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5936
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3868
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15022
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2908
bin: 8.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503262078710802e-5
allele num: 66522
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10290
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.622e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.23e1

MQRankSum
type: SiteQuality
SIO_000300: 5.7e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 6.33e-1

MQ
type: SiteQuality
SIO_000300: 5.859e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.47e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e0

DP
type: SiteQuality
SIO_000300: 1.965725e6

GenotypeQuality
all individuals: 352
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 15649
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 42
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 9
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variant carriers: 0

GenotypeQuality
all individuals: 5944
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
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variant carriers: 0

GenotypeQuality
all individuals: 6900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
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variant carriers: 0

GenotypeQuality
all individuals: 3972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14835
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2910
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3869
bin: 9.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66488
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

QD
type: SiteQuality
SIO_000300: 1.184e1

FS
type: SiteQuality
SIO_000300: 1.867e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.343e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.59e-1

DP
type: SiteQuality
SIO_000300: 1.966234e6

MQ
type: SiteQuality
SIO_000300: 5.735e1

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 126
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 19
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variant carriers: 0

GenotypeQuality
all individuals: 1
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variant carriers: 0

GenotypeQuality
all individuals: 5309
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 352
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variant carriers: 0

GenotypeQuality
all individuals: 6900
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 14835
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
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GenotypeQuality
all individuals: 2910
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 162
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 74
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15649
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 3869
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5944
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10276
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504030802550836e-5
allele num: 66488
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.11e-1

DP
type: SiteQuality
SIO_000300: 1.966234e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.343e0

QD
type: SiteQuality
SIO_000300: 1.184e1

MQ
type: SiteQuality
SIO_000300: 5.735e1

FS
type: SiteQuality
SIO_000300: 1.867e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.59e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.97e-1

GenotypeQuality
all individuals: 3972
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 14
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GenotypeQuality
all individuals: 32
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variant carriers: 0

GenotypeQuality
all individuals: 197
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15
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GenotypeQuality
all individuals: 85
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 160
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 374
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 3.75e1
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GenotypeQuality
all individuals: 5949
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
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GenotypeQuality
all individuals: 15659
bin: 9.75e1
variant carriers: 3

GenotypeQuality
all individuals: 65
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14979
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6900
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.510193036261952e-5
allele num: 66516
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.666e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -5.96e-1

VQSLOD
type: SiteQuality
SIO_000300: 7.3e-2

DP
type: SiteQuality
SIO_000300: 1.967669e6

QD
type: SiteQuality
SIO_000300: 1.741e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.08e-1

FS
type: SiteQuality
SIO_000300: 4.165e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.178e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.56e-1

GenotypeQuality
all individuals: 192
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3876
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 2.5e0
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5948
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3967
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503849855630414e-5
allele num: 66496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.675e0

VQSLOD
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SIO_000300: -1.668e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.29e-1

MQ
type: SiteQuality
SIO_000300: 5.625e1

MQRankSum
type: SiteQuality
SIO_000300: -2.531e0

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

FS
type: SiteQuality
SIO_000300: 2.651e0

DP
type: SiteQuality
SIO_000300: 1.968111e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.183e1

GenotypeQuality
all individuals: 76
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14967
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 15670
bin: 9.75e1
variant carriers: 2

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8652
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.007699711260828e-5
allele num: 66496
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10282
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.668e0

FS
type: SiteQuality
SIO_000300: 2.651e0

MQ
type: SiteQuality
SIO_000300: 5.625e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -2.531e0

QD
type: SiteQuality
SIO_000300: 1.183e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.85e-1

DP
type: SiteQuality
SIO_000300: 1.968111e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.29e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.675e0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 3

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5321
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variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10288
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.5092439500977e-5
allele num: 66530
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.03e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.85e-1

FS
type: SiteQuality
SIO_000300: 3.382e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.04e-1

MQ
type: SiteQuality
SIO_000300: 5.479e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.597e0

VQSLOD
type: SiteQuality
SIO_000300: 7.4e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

QD
type: SiteQuality
SIO_000300: 1.741e1

DP
type: SiteQuality
SIO_000300: 1.969237e6

GenotypeQuality
all individuals: 6940
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
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variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 2921
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5963
bin: 7.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10312
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11578
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.003995313767311e-5
allele num: 66578
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.65e-1

QD
type: SiteQuality
SIO_000300: 1.21e1

MQRankSum
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SIO_000300: 7.81e-1

MQ
type: SiteQuality
SIO_000300: 5.772e1

VQSLOD
type: SiteQuality
SIO_000300: -2.001e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

FS
type: SiteQuality
SIO_000300: 7.61e-1

DP
type: SiteQuality
SIO_000300: 1.971946e6

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 71
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 61
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GenotypeQuality
all individuals: 5338
bin: 8.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10322
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.637070305752289e-5
allele num: 11578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8654
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66582
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.065e0

MQRankSum
type: SiteQuality
SIO_000300: 6.899999999999999e-1

MQ
type: SiteQuality
SIO_000300: 5.789e1

DP
type: SiteQuality
SIO_000300: 1.973127e6

FS
type: SiteQuality
SIO_000300: 5.424e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 3.55e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.399e0

QD
type: SiteQuality
SIO_000300: 1.282e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.409999999999999e-1

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 110

GenotypeQuality
all individuals: 331
bin: 7.75e1
variant carriers: 191

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 82

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 204
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variant carriers: 128

GenotypeQuality
all individuals: 370
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 57836
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variant carriers: 57370

GenotypeQuality
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variant carriers: 57

GenotypeQuality
all individuals: 36
bin: 4.25e1
variant carriers: 33

GenotypeQuality
all individuals: 223
bin: 7.25e1
variant carriers: 96

East Asian
type: Population
allele count: 8533
allele frequency: 9.860180263461983e-1
allele num: 8654
num of homozygotes: 4207

South Asian
type: Population
allele count: 15122
allele frequency: 9.158187984496124e-1
allele num: 16512
num of homozygotes: 6945

European (Finnish)
type: Population
allele count: 4520
allele frequency: 6.838124054462935e-1
allele num: 6610
num of homozygotes: 1578

Latino
type: Population
allele count: 10584
allele frequency: 9.144634525660964e-1
allele num: 11574
num of homozygotes: 4853

African
type: Population
allele count: 8495
allele frequency: 8.184007707129094e-1
allele num: 10380
num of homozygotes: 3471

Other
type: Population
allele count: 731
allele frequency: 8.068432671081678e-1
allele num: 906
num of homozygotes: 300

European (Non-Finnish)
type: Population
allele count: 54809
allele frequency: 8.220692344612431e-1
allele num: 66672
num of homozygotes: 22500

DP
type: SiteQuality
SIO_000300: 4.803719e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.48e-2

ReadPosRankSum
type: SiteQuality
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BaseQRankSum
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QD
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 1.101e0

MQ
type: SiteQuality
SIO_000300: 5.803e1

VQSLOD
type: SiteQuality
SIO_000300: 1.34e0

MQRankSum
type: SiteQuality
SIO_000300: -1.08e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.01e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 53
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GenotypeQuality
all individuals: 1827
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GenotypeQuality
all individuals: 60
bin: 4.75e1
variant carriers: 0

African
type: Population
allele count: 3
allele frequency: 2.895193977996526e-4
allele num: 10362
num of homozygotes: 0

South Asian
type: Population
allele count: 9
allele frequency: 5.450581395348837e-4
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 4
allele frequency: 3.455425017277125e-4
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.103752759381898e-3
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 86
allele frequency: 1.290283862449739e-3
allele num: 66652
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

MQRankSum
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SIO_000300: 6.26e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.11e-1

FS
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DP
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SIO_000300: 3.584965e6

QD
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SIO_000300: 1.428e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

MQ
type: SiteQuality
SIO_000300: 5.82e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.819e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.900000000000001e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.91e-1

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 3

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66652
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 1.93012931866435e-4
allele num: 10362
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.783e1

DP
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InbreedingCoeff
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SIO_000300: -1.0e-4

VQSLOD
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FS
type: SiteQuality
SIO_000300: 5.7e-1

MQRankSum
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SIO_000300: -7.55e-1

BaseQRankSum
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SIO_000300: -1.124e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.78e0

QD
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SIO_000300: 3.06e1

ClippingRankSum
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SIO_000300: -4.37e-1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.500375093773443e-5
allele num: 66650
num of homozygotes: 0

Other
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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MQ
type: SiteQuality
SIO_000300: 5.508e1

InbreedingCoeff
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SIO_000300: -1.0e-4

ReadPosRankSum
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SIO_000300: 3.92e-1

DP
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SIO_000300: 3.58368e6

FS
type: SiteQuality
SIO_000300: 5.41e0

BaseQRankSum
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SIO_000300: 2.85e0

MQRankSum
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SIO_000300: -2.332e0

VQSLOD
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SIO_000300: -1.637e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.49e-1

QD
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SIO_000300: 1.215e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 2
allele frequency: 3.023888720895071e-4
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 66640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10356
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -4.1e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -2.15e-1

MQ
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SIO_000300: 5.879e1

DP
type: SiteQuality
SIO_000300: 3.582962e6

VQSLOD
type: SiteQuality
SIO_000300: -5.588e-1

BaseQRankSum
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SIO_000300: -3.449e0

QD
type: SiteQuality
SIO_000300: 1.415e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.330000000000001e-1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 3830
bin: 6.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.663703131039814e-5
allele num: 10348
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

VQSLOD
type: SiteQuality
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InbreedingCoeff
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FS
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SIO_000300: 2.48e0

MQRankSum
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ClippingRankSum
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SIO_000300: -5.73e-1

ReadPosRankSum
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QD
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BaseQRankSum
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MQ
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DP
type: SiteQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 5

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66644
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 4.831851565519907e-4
allele num: 10348
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

South Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

QD
type: SiteQuality
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FS
type: SiteQuality
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InbreedingCoeff
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MQ
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BaseQRankSum
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ReadPosRankSum
type: SiteQuality
SIO_000300: 2.36e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.73e-1

VQSLOD
type: SiteQuality
SIO_000300: 9.16e-1

MQRankSum
type: SiteQuality
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DP
type: SiteQuality
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GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

African
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allele count: 1
allele frequency: 9.66183574879227e-5
allele num: 10350
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66646
num of homozygotes: 0

South Asian
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BaseQRankSum
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SIO_000300: 3.32e0

FS
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InbreedingCoeff
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ReadPosRankSum
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VQSLOD
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ClippingRankSum
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MQ
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MQRankSum
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DP
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QD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

Other
type: Population
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num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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European (Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 12
allele frequency: 1.803534928459781e-4
allele num: 66536
num of homozygotes: 0

South Asian
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allele frequency: 6.056201550387597e-5
allele num: 16512
num of homozygotes: 0

African
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allele frequency: 0.0e0
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Latino
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ReadPosRankSum
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FS
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DP
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MQ
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ClippingRankSum
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InbreedingCoeff
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VQSLOD
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QD
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BaseQRankSum
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MQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503488092374308e-5
allele num: 66512
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
allele num: 16512
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

East Asian
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allele frequency: 0.0e0
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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MQ
type: SiteQuality
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VQSLOD
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MQRankSum
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FS
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QD
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InbreedingCoeff
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ClippingRankSum
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BaseQRankSum
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DP
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

African
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allele frequency: 0.0e0
allele num: 10258
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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Other
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
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num of homozygotes: 0

VQSLOD
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QD
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MQRankSum
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DP
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BaseQRankSum
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ClippingRankSum
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FS
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InbreedingCoeff
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ReadPosRankSum
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MQ
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SIO_000300: 5.875e1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele frequency: 1.15606936416185e-4
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

Latino
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allele frequency: 0.0e0
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African
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allele frequency: 0.0e0
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

MQ
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SIO_000300: 5.875e1

DP
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BaseQRankSum
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QD
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VQSLOD
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ClippingRankSum
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ReadPosRankSum
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MQRankSum
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InbreedingCoeff
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SIO_000300: -1.0e-4

FS
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SIO_000300: 0.0e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

Latino
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allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

European (Finnish)
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allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
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allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Non-Finnish)
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allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele num: 16512
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MQRankSum
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SIO_000300: 6.43e-1

QD
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MQ
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VQSLOD
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FS
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ClippingRankSum
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BaseQRankSum
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InbreedingCoeff
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DP
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ReadPosRankSum
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

East Asian
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allele count: 0
allele frequency: 0.0e0
allele num: 8650
num of homozygotes: 0

Latino
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allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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num of homozygotes: 0

African
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Other
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allele frequency: 0.0e0
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num of homozygotes: 0

European (Non-Finnish)
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allele count: 1
allele frequency: 1.503352476021528e-5
allele num: 66518
num of homozygotes: 0

European (Finnish)
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allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
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ClippingRankSum
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InbreedingCoeff
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QD
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BaseQRankSum
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DP
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MQ
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MQRankSum
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ReadPosRankSum
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VQSLOD
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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East Asian
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allele num: 8650
num of homozygotes: 0

African
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Latino
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allele frequency: 0.0e0
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num of homozygotes: 0

South Asian
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allele frequency: 0.0e0
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European (Non-Finnish)
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European (Finnish)
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Other
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ReadPosRankSum
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MQ
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BaseQRankSum
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InbreedingCoeff
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MQRankSum
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FS
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VQSLOD
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DP
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QD
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ClippingRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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African
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num of homozygotes: 0

South Asian
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European (Finnish)
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Latino
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European (Non-Finnish)
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East Asian
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Other
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DP
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MQRankSum
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QD
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FS
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VQSLOD
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ReadPosRankSum
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ClippingRankSum
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InbreedingCoeff
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MQ
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BaseQRankSum
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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European (Finnish)
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East Asian
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African
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European (Non-Finnish)
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South Asian
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Latino
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Other
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InbreedingCoeff
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ClippingRankSum
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VQSLOD
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SIO_000300: -2.298e0

QD
type: SiteQuality
SIO_000300: 1.904e1

MQ
type: SiteQuality
SIO_000300: 5.842e1

FS
type: SiteQuality
SIO_000300: 7.67e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.5e-1

DP
type: SiteQuality
SIO_000300: 3.572416e6

BaseQRankSum
type: SiteQuality
SIO_000300: -1.868e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.54e-1

GenotypeQuality
all individuals: 122
bin: 5.25e1
variant carriers: 13

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 1193
bin: 6.75e1
variant carriers: 19

GenotypeQuality
all individuals: 423
bin: 2.25e1
variant carriers: 2

GenotypeQuality
all individuals: 751
bin: 7.25e1
variant carriers: 19

GenotypeQuality
all individuals: 19
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 1108
bin: 8.25e1
variant carriers: 34

GenotypeQuality
all individuals: 45
bin: 2.5e0
variant carriers: 1

GenotypeQuality
all individuals: 94
bin: 4.25e1
variant carriers: 6

GenotypeQuality
all individuals: 219
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 3

GenotypeQuality
all individuals: 80
bin: 5.75e1
variant carriers: 8

GenotypeQuality
all individuals: 164
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 50700
bin: 9.75e1
variant carriers: 18924

GenotypeQuality
all individuals: 1195
bin: 9.25e1
variant carriers: 38

GenotypeQuality
all individuals: 128
bin: 4.75e1
variant carriers: 16

African
type: Population
allele count: 2661
allele frequency: 2.600664581704457e-1
allele num: 10232
num of homozygotes: 337

Latino
type: Population
allele count: 2281
allele frequency: 1.97284206884622e-1
allele num: 11562
num of homozygotes: 232

European (Finnish)
type: Population
allele count: 682
allele frequency: 1.031146053825219e-1
allele num: 6614
num of homozygotes: 42

European (Non-Finnish)
type: Population
allele count: 8182
allele frequency: 1.230894211096401e-1
allele num: 66472
num of homozygotes: 536

Other
type: Population
allele count: 179
allele frequency: 1.975717439293598e-1
allele num: 906
num of homozygotes: 11

South Asian
type: Population
allele count: 4775
allele frequency: 2.893588655920494e-1
allele num: 16502
num of homozygotes: 754

East Asian
type: Population
allele count: 2748
allele frequency: 3.184979137691238e-1
allele num: 8628
num of homozygotes: 451

MQRankSum
type: SiteQuality
SIO_000300: 2.19e-1

DP
type: SiteQuality
SIO_000300: 3.700251e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.43e-2

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.51e-1

VQSLOD
type: SiteQuality
SIO_000300: 5.39e0

MQ
type: SiteQuality
SIO_000300: 5.931e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.33e-1

QD
type: SiteQuality
SIO_000300: 1.687e1

GenotypeQuality
all individuals: 172
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1460
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 283
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 237
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 585
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3442
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 990
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1519
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1011
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 127
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47090
bin: 9.75e1
variant carriers: 18

Latino
type: Population
allele count: 7
allele frequency: 6.051175656984786e-4
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.778994719342852e-5
allele num: 10226
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 10
allele frequency: 1.50407604608489e-4
allele num: 66486
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 5.2e-1

MQ
type: SiteQuality
SIO_000300: 5.923e1

MQRankSum
type: SiteQuality
SIO_000300: 4.57e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.69e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.74e-1

QD
type: SiteQuality
SIO_000300: 1.408e1

VQSLOD
type: SiteQuality
SIO_000300: 1.52e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.26e-2

DP
type: SiteQuality
SIO_000300: 3.641514e6

ClippingRankSum
type: SiteQuality
SIO_000300: -8.3e-2

GenotypeQuality
all individuals: 1011
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1462
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3431
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 311
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 136
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47089
bin: 9.75e1
variant carriers: 24

GenotypeQuality
all individuals: 17
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 613
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1517
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 1.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10222
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 904
num of homozygotes: 0

East Asian
type: Population
allele count: 24
allele frequency: 2.775208140610546e-3
allele num: 8648
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66470
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 5.948e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.93e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.24e0

MQRankSum
type: SiteQuality
SIO_000300: 2.7e-1

QD
type: SiteQuality
SIO_000300: 1.352e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.097e0

DP
type: SiteQuality
SIO_000300: 3.639894e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.37e-1

GenotypeQuality
all individuals: 617
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1723
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1010
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47089
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 18
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1367
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16506
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.775171065493646e-5
allele num: 10230
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.896e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

FS
type: SiteQuality
SIO_000300: 6.617e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.02e-1

QD
type: SiteQuality
SIO_000300: 1.224e1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

DP
type: SiteQuality
SIO_000300: 3.639056e6

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 393
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 25
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3352
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 204
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 617
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1464
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 256
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47089
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1723
bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8648
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66466
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 1
allele frequency: 1.511944360447536e-4
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.058403004967891e-5
allele num: 16506
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.639056e6

MQ
type: SiteQuality
SIO_000300: 5.896e1

VQSLOD
type: SiteQuality
SIO_000300: 2.18e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.02e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.418e0

MQRankSum
type: SiteQuality
SIO_000300: -1.29e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 4.37e-1

FS
type: SiteQuality
SIO_000300: 6.617e0

QD
type: SiteQuality
SIO_000300: 1.224e1

GenotypeQuality
all individuals: 134
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1360
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 264
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 418
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 28
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47087
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 70
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 984
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1639
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3194
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 8.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10214
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504981488727689e-5
allele num: 66446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8646
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -8.79e-1

MQ
type: SiteQuality
SIO_000300: 5.87e1

MQRankSum
type: SiteQuality
SIO_000300: 9.13e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.924e-1

QD
type: SiteQuality
SIO_000300: 1.433e1

BaseQRankSum
type: SiteQuality
SIO_000300: 7.75e-1

FS
type: SiteQuality
SIO_000300: 1.808e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.41e-1

DP
type: SiteQuality
SIO_000300: 3.635244e6

GenotypeQuality
all individuals: 267
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 117
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 36
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 604
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1359
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1459
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 431
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 292
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 983
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 48
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1513
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 986
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1632
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47088
bin: 9.75e1
variant carriers: 2

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16496
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.011322572874006e-5
allele num: 66416
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10178
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 3.634807e6

FS
type: SiteQuality
SIO_000300: 1.538e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -7.03e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.34e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -9.02e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.07e0

QD
type: SiteQuality
SIO_000300: 1.429e1

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 1449
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 610
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 471
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 12
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 479
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1608
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 110
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 47086
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 981
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1346
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 5.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16472
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10220
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.505570611261668e-5
allele num: 66420
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.978e0

VQSLOD
type: SiteQuality
SIO_000300: 8.03e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.74e-1

QD
type: SiteQuality
SIO_000300: 1.37e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.626e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.75e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

DP
type: SiteQuality
SIO_000300: 3.633558e6

MQ
type: SiteQuality
SIO_000300: 5.95e1

GenotypeQuality
all individuals: 103
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 935
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 41
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 539
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 500
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1458
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 267
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2070
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 598
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 47091
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1334
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 547
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1520
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 282
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 906
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11564
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.811616954474098e-5
allele num: 10192
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16462
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66344
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.02e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.9e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.538e0

FS
type: SiteQuality
SIO_000300: 1.0948e1

DP
type: SiteQuality
SIO_000300: 3.630142e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.154e0

QD
type: SiteQuality
SIO_000300: 7.25e0

GenotypeQuality
all individuals: 404
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 183
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 105
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1522
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 671
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 353
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 583
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.000400160064026e-4
allele num: 9996
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16026
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65628
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.148e0

DP
type: SiteQuality
SIO_000300: 4.567137e6

BaseQRankSum
type: SiteQuality
SIO_000300: -2.282e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.263e0

QD
type: SiteQuality
SIO_000300: 1.022e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.05e0

FS
type: SiteQuality
SIO_000300: 6.019e0

VQSLOD
type: SiteQuality
SIO_000300: -2.381e-1

MQ
type: SiteQuality
SIO_000300: 6.0e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 184
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 329
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1591
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 409
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 220
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 186
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 553
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 302
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 277
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1923
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 51517
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 160
bin: 5.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11566
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9986
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 896
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16056
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -8.120000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.15e0

MQ
type: SiteQuality
SIO_000300: 5.928e1

QD
type: SiteQuality
SIO_000300: 8.59e0

DP
type: SiteQuality
SIO_000300: 4.565163e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -8.02e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.901e0

MQRankSum
type: SiteQuality
SIO_000300: -1.81e0

GenotypeQuality
all individuals: 365
bin: 4.75e1
variant carriers: 3

GenotypeQuality
all individuals: 528
bin: 6.75e1
variant carriers: 1

GenotypeQuality
all individuals: 203
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 87
bin: 1.25e1
variant carriers: 1

GenotypeQuality
all individuals: 78
bin: 5.75e1
variant carriers: 1

GenotypeQuality
all individuals: 633
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 623
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.25e1
variant carriers: 1

GenotypeQuality
all individuals: 340
bin: 7.75e1
variant carriers: 6

GenotypeQuality
all individuals: 35
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 332
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 376
bin: 9.25e1
variant carriers: 3

GenotypeQuality
all individuals: 2103
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 51719
bin: 9.75e1
variant carriers: 2357

GenotypeQuality
all individuals: 758
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 89
allele frequency: 1.345630480798307e-2
allele num: 6614
num of homozygotes: 1

Other
type: Population
allele count: 11
allele frequency: 1.230425055928412e-2
allele num: 894
num of homozygotes: 0

African
type: Population
allele count: 70
allele frequency: 7.018247443352717e-3
allele num: 9974
num of homozygotes: 0

South Asian
type: Population
allele count: 337
allele frequency: 2.099426862696237e-2
allele num: 16052
num of homozygotes: 9

East Asian
type: Population
allele count: 34
allele frequency: 3.935185185185185e-3
allele num: 8640
num of homozygotes: 1

Latino
type: Population
allele count: 658
allele frequency: 5.690072639225181e-2
allele num: 11564
num of homozygotes: 26

European (Non-Finnish)
type: Population
allele count: 1220
allele frequency: 1.860039640189053e-2
allele num: 65590
num of homozygotes: 11

BaseQRankSum
type: SiteQuality
SIO_000300: -3.22e0

VQSLOD
type: SiteQuality
SIO_000300: 4.65e0

QD
type: SiteQuality
SIO_000300: 1.401e1

FS
type: SiteQuality
SIO_000300: 1.297e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.84e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.580000000000001e-1

MQ
type: SiteQuality
SIO_000300: 5.962e1

DP
type: SiteQuality
SIO_000300: 4.587942e6

GenotypeQuality
all individuals: 380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 788
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 202
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 641
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 650
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2246
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 535
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 354
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 190
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 210
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51459
bin: 9.75e1
variant carriers: 4

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16032
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65558
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.010427110487267e-4
allele num: 9974
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.634e0

MQ
type: SiteQuality
SIO_000300: 5.816e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -6.141e-1

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-2

DP
type: SiteQuality
SIO_000300: 4.508478e6

BaseQRankSum
type: SiteQuality
SIO_000300: -5.9e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.19e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.3e-3

QD
type: SiteQuality
SIO_000300: 1.279e1

GenotypeQuality
all individuals: 2454
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 765
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 138
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51457
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1711
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 308
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 589
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 511
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 630
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.002004008016032e-4
allele num: 9980
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.257822277847309e-5
allele num: 15980
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65536
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

QD
type: SiteQuality
SIO_000300: 1.25e1

MQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

FS
type: SiteQuality
SIO_000300: 7.5e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.2e0

VQSLOD
type: SiteQuality
SIO_000300: 8.85e-1

DP
type: SiteQuality
SIO_000300: 4.509364e6

MQ
type: SiteQuality
SIO_000300: 5.936e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.87e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -5.43e-1

GenotypeQuality
all individuals: 206
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2467
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 629
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1706
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 51456
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 330
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 381
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 315
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 507
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 764
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 168
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9982
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15986
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.051571559353067e-5
allele num: 65540
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 5.610000000000001e-1

FS
type: SiteQuality
SIO_000300: 7.11e0

VQSLOD
type: SiteQuality
SIO_000300: 3.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.325e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.5e-3

DP
type: SiteQuality
SIO_000300: 4.50951e6

QD
type: SiteQuality
SIO_000300: 1.269e1

MQ
type: SiteQuality
SIO_000300: 5.947e1

ClippingRankSum
type: SiteQuality
SIO_000300: 7.68e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.54e-1

GenotypeQuality
all individuals: 60
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 705
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51457
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 79
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 612
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1686
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 543
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 326
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 34
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 380
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 161
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 211
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 230
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.001602564102564e-4
allele num: 9984
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65580
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -7.3e-2

ClippingRankSum
type: SiteQuality
SIO_000300: -1.305e0

QD
type: SiteQuality
SIO_000300: 1.039e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.837e0

FS
type: SiteQuality
SIO_000300: 4.225e0

DP
type: SiteQuality
SIO_000300: 4.511591e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.21e-1

MQ
type: SiteQuality
SIO_000300: 5.98e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.93e0

GenotypeQuality
all individuals: 211
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 132
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 340
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 602
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 31
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 36

GenotypeQuality
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GenotypeQuality
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bin: 7.25e1
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GenotypeQuality
all individuals: 326
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GenotypeQuality
all individuals: 509
bin: 6.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65550
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16026
num of homozygotes: 0

Latino
type: Population
allele count: 7
allele frequency: 6.051175656984786e-4
allele num: 11568
num of homozygotes: 0

African
type: Population
allele count: 29
allele frequency: 2.906976744186046e-3
allele num: 9976
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.18e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.075e0

QD
type: SiteQuality
SIO_000300: 1.338e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.0e-4

MQ
type: SiteQuality
SIO_000300: 5.963e1

VQSLOD
type: SiteQuality
SIO_000300: 5.53e0

MQRankSum
type: SiteQuality
SIO_000300: 2.8e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.51e-1

DP
type: SiteQuality
SIO_000300: 4.514104e6

GenotypeQuality
all individuals: 251
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 1.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 3

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.050268423621279e-5
allele num: 65568
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.002204850671477e-4
allele num: 9978
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16044
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: 2.81e0

DP
type: SiteQuality
SIO_000300: 4.512797e6

BaseQRankSum
type: SiteQuality
SIO_000300: -4.91e-1

MQ
type: SiteQuality
SIO_000300: 5.97e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

QD
type: SiteQuality
SIO_000300: 1.316e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.61e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.09e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.71e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11570
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9964
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16066
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52545992616774e-5
allele num: 65554
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.73e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: 4.2e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.61e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.4e0

MQ
type: SiteQuality
SIO_000300: 5.974e1

FS
type: SiteQuality
SIO_000300: 5.659999999999999e-1

DP
type: SiteQuality
SIO_000300: 4.513911e6

QD
type: SiteQuality
SIO_000300: 1.23e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.324e0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 595
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variant carriers: 0

GenotypeQuality
all individuals: 185
bin: 8.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65578
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16184
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.006036217303823e-4
allele num: 9940
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e0

QD
type: SiteQuality
SIO_000300: 1.75e1

VQSLOD
type: SiteQuality
SIO_000300: -7.367e-1

MQ
type: SiteQuality
SIO_000300: 5.933e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: -7.0e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -8.39e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.621e0

FS
type: SiteQuality
SIO_000300: 8.467000000000001e0

DP
type: SiteQuality
SIO_000300: 4.525143e6

GenotypeQuality
all individuals: 96
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51457
bin: 9.75e1
variant carriers: 75

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 343
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GenotypeQuality
all individuals: 49
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GenotypeQuality
all individuals: 138
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GenotypeQuality
all individuals: 10
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GenotypeQuality
all individuals: 1170
bin: 2.25e1
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GenotypeQuality
all individuals: 382
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variant carriers: 0

GenotypeQuality
all individuals: 165
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 86
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 251
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 4.25e1
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GenotypeQuality
all individuals: 59
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
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variant carriers: 0

GenotypeQuality
all individuals: 4697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 66
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 231
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9950
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.140997297961189e-5
allele num: 16284
num of homozygotes: 0

East Asian
type: Population
allele count: 76
allele frequency: 8.794260587826891e-3
allele num: 8642
num of homozygotes: 2

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65602
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 2.549e0

MQ
type: SiteQuality
SIO_000300: 5.96e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.915e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.14e-2

DP
type: SiteQuality
SIO_000300: 4.534028e6

MQRankSum
type: SiteQuality
SIO_000300: 3.08e-1

VQSLOD
type: SiteQuality
SIO_000300: 2.32e0

QD
type: SiteQuality
SIO_000300: 1.353e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.63e-1

GenotypeQuality
all individuals: 382
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 9
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4969
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 135
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 50
bin: 5.25e1
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GenotypeQuality
all individuals: 347
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 199
bin: 3.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16354
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9948
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.523786304208698e-5
allele num: 65626
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.816e1

QD
type: SiteQuality
SIO_000300: 9.4e0

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.7e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -5.38e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.620000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.348e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.11e-1

FS
type: SiteQuality
SIO_000300: 1.854e0

DP
type: SiteQuality
SIO_000300: 4.529935e6

GenotypeQuality
all individuals: 113
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 244
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 720
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GenotypeQuality
all individuals: 59
bin: 4.75e1
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GenotypeQuality
all individuals: 5338
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65600
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16450
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.007049345417925e-4
allele num: 9930
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.42e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.85e-1

DP
type: SiteQuality
SIO_000300: 4.535388e6

MQRankSum
type: SiteQuality
SIO_000300: 9.54e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

VQSLOD
type: SiteQuality
SIO_000300: -1.22e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.95e-1

MQ
type: SiteQuality
SIO_000300: 5.627e1

QD
type: SiteQuality
SIO_000300: 5.2e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
all individuals: 187
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GenotypeQuality
all individuals: 51451
bin: 9.75e1
variant carriers: 3

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16456
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.471418653089562e-4
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9930
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -1.137e0

BaseQRankSum
type: SiteQuality
SIO_000300: -5.763e0

FS
type: SiteQuality
SIO_000300: 1.758e0

VQSLOD
type: SiteQuality
SIO_000300: 2.09e-1

QD
type: SiteQuality
SIO_000300: 1.121e1

MQ
type: SiteQuality
SIO_000300: 5.961e1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.446e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

DP
type: SiteQuality
SIO_000300: 4.53606e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 243
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 344
bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
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GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.5e0
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GenotypeQuality
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bin: 4.75e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 383
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 8.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16464
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65632
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 7.09e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

MQ
type: SiteQuality
SIO_000300: 5.965e1

BaseQRankSum
type: SiteQuality
SIO_000300: -4.252e0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 4.536329e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.51e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.99e-1

QD
type: SiteQuality
SIO_000300: 1.147e1

VQSLOD
type: SiteQuality
SIO_000300: 2.59e0

GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 1.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 25
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 5.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65664
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16482
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.111111111111111e-3
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9958
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.062e0

MQRankSum
type: SiteQuality
SIO_000300: -5.0e-1

MQ
type: SiteQuality
SIO_000300: 5.932e1

BaseQRankSum
type: SiteQuality
SIO_000300: -3.734e0

FS
type: SiteQuality
SIO_000300: 6.729e0

QD
type: SiteQuality
SIO_000300: 1.19e1

VQSLOD
type: SiteQuality
SIO_000300: -1.186e0

DP
type: SiteQuality
SIO_000300: 4.537414e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.999999999999999e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.76e0

GenotypeQuality
all individuals: 7
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 248
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 11
bin: 4.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9976
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.5220700152207e-5
allele num: 65700
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.05913717886573e-5
allele num: 16504
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.17e-1

DP
type: SiteQuality
SIO_000300: 4.539188e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.0e-4

MQ
type: SiteQuality
SIO_000300: 6.0e1

QD
type: SiteQuality
SIO_000300: 1.033e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.332e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

VQSLOD
type: SiteQuality
SIO_000300: 4.09e-1

FS
type: SiteQuality
SIO_000300: 6.001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.36e-1

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 47
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 758
bin: 6.75e1
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GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16504
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8642
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.0441400304414e-5
allele num: 65700
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.29e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.447e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

DP
type: SiteQuality
SIO_000300: 4.539393e6

BaseQRankSum
type: SiteQuality
SIO_000300: 1.99e0

MQ
type: SiteQuality
SIO_000300: 5.421e1

FS
type: SiteQuality
SIO_000300: 7.91e-1

QD
type: SiteQuality
SIO_000300: 2.62e0

MQRankSum
type: SiteQuality
SIO_000300: -5.463e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.83e-1

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 4.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65614
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.007252215954875e-4
allele num: 9928
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11576
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.98e1

FS
type: SiteQuality
SIO_000300: 3.221e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

ClippingRankSum
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: 1.7e0

QD
type: SiteQuality
SIO_000300: 1.459e1

MQRankSum
type: SiteQuality
SIO_000300: 1.94e0

VQSLOD
type: SiteQuality
SIO_000300: -3.705e-1

DP
type: SiteQuality
SIO_000300: 4.537571e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.64e0

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.108647450110865e-3
allele num: 902
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.018978396931153e-4
allele num: 9906
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65568
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.638562543192812e-5
allele num: 11576
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16502
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
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num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.848e0

QD
type: SiteQuality
SIO_000300: 1.251e1

FS
type: SiteQuality
SIO_000300: 1.763e0

InbreedingCoeff
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VQSLOD
type: SiteQuality
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ReadPosRankSum
type: SiteQuality
SIO_000300: -2.42e-1

ClippingRankSum
type: SiteQuality
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MQRankSum
type: SiteQuality
SIO_000300: 6.3e-1

MQ
type: SiteQuality
SIO_000300: 5.963e1

DP
type: SiteQuality
SIO_000300: 4.537533e6

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 6.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65534
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16498
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11574
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.010713563776026e-4
allele num: 9894
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 4.53639e6

VQSLOD
type: SiteQuality
SIO_000300: 7.000000000000001e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.18e0

QD
type: SiteQuality
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InbreedingCoeff
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MQ
type: SiteQuality
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FS
type: SiteQuality
SIO_000300: 3.609e0

MQRankSum
type: SiteQuality
SIO_000300: 1.02e0

BaseQRankSum
type: SiteQuality
SIO_000300: 4.77e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.736e0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 240
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5578
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 350
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9906
num of homozygotes: 0

South Asian
type: Population
allele count: 14
allele frequency: 8.486905916585839e-4
allele num: 16496
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.067821948317418e-4
allele num: 65554
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 902
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 8.640055296353897e-5
allele num: 11574
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.35e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 1.53e-1

DP
type: SiteQuality
SIO_000300: 4.537314e6

FS
type: SiteQuality
SIO_000300: 5.28e-1

MQ
type: SiteQuality
SIO_000300: 5.96e1

VQSLOD
type: SiteQuality
SIO_000300: 4.03e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.077e0

QD
type: SiteQuality
SIO_000300: 1.218e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.98e-1

GenotypeDepth
all individuals: 3133
bin: 5.75e1
variant carriers: 0

GenotypeDepth
all individuals: 2621
bin: 2.75e1
variant carriers: 0

GenotypeDepth
all individuals: 3502
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 5493
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 69
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 717
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 268
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 239
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 187
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 341
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 14
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 382
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 51451
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 9
bin: 5.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11572
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65418
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.076072426783327e-5
allele num: 16458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 6.75e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.888e0