9-39103692-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103692
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103692
    reference: chr 9
allele count: 2
allele frequency: 1.760594376661561e-5
allele num: 113598
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+49T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+49T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.636T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+49T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.471T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*331T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.201+19T>C
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 384
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1317
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11019
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3357
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9683
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3452
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12543
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15545
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5365
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1265
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3185
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1999
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4555
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 755
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4399
  bin: 9.75e1
  variant carriers: 2
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
reference allele: A
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: MQ
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

9-39103696-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103696
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103696
    reference: chr 9
allele count: 2
allele frequency: 1.760222492123004e-5
allele num: 113622
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+45G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+45G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*327G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.467G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+45G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.632G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.201+15G>A
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19092
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 333
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 385
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 347
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9494
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 288
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11265
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3328
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 8889
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3548
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1321
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 651
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3772
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 235
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1956
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 367
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3479
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 312
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1870
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4406
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 773
  bin: 9.25e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
population: Other
population: Latino
population: South Asian
reference allele: C
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP

9-39103706-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103706
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103706
    reference: chr 9
allele count: 1
allele frequency: 8.747375787263821e-6
allele num: 114320
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*317C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+35C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+35C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.622C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.457C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.201+5C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+35C>T
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 27170
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1341
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2704
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12262
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6581
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 653
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 334
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3189
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 195
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3817
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1357
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3497
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4429
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1024
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 513
  bin: 5.25e1
  variant carriers: 0
hgvs: n.201+5C>T
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: MQ
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: QD

9-39103707-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103707
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103707
    reference: chr 9
allele count: 1
allele frequency: 8.734234706355028e-6
allele num: 114492
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*316C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+34C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.621C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.201+4C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+34C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.456C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+34C>T
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 3842
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6222
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 184
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3152
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27598
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1343
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12444
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2474
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 175
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 903
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2121
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1726
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2359
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4435
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2744
  bin: 3.25e1
  variant carriers: 0
hgvs: n.201+4C>T
num of homozygotes: 0
population: East Asian
population: European (Finnish)
population: Other
population: Latino
population: African
population: European (Non-Finnish)
population: South Asian
reference allele: G
site quality: QD
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: DP
site quality: VQSLOD

9-39103708-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103708
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103708
    reference: chr 9
allele count: 1
allele frequency: 8.723263198297218e-6
allele num: 114636
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+33A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.455A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+33A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+33A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.620A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*315A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.201+3A>G
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 28078
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 199
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5893
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 125
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2221
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 223
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3871
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3108
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 654
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 289
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 635
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1346
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12567
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 335
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1529
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 462
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5528
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 125
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 736
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 807
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3433
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 5.75e1
  variant carriers: 0
hgvs: n.201+3A>G
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
population: African
reference allele: T
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum

http://identifiers.org/exac.variant/9-39103710-C-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103710
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103710
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 114240
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*313G>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+31G>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+31G>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.201+1G>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+31G>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.618G>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.453G>T
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: splice donor
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 29042
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12865
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1772
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 32643
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2168
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 592
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 210
  bin: 7.5e0
  variant carriers: 0
hgvs: n.201+1G>T
num of homozygotes: 0
population: African
population: East Asian
population: South Asian
population: Latino
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: MQRankSum

9-39103710-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103710
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103710
    reference: chr 9
allele count: 219
allele frequency: 1.917016806722689e-3
allele num: 114240
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*313G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.618G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: splice_donor_variant
  consequence: non_coding_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.201+1G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.453G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+31G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+31G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+31G>A
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: splice donor
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1906
  bin: 1.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 295
  bin: 5.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 139
  bin: 2.5e0
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 1373
  bin: 3.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 2799
  bin: 7.5e0
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 5123
  bin: 1.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 29042
  bin: 2.25e1
  variant carriers: 31
genotype depth: GenotypeDepth
  all individuals: 639
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 12865
  bin: 2.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 341
  bin: 5.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3967
  bin: 3.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 2227
  bin: 3.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 5638
  bin: 6.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 298
  bin: 5.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 566
  bin: 8.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 2.75e1
  variant carriers: 9
genotype quality: GenotypeQuality
  all individuals: 1393
  bin: 8.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3059
  bin: 2.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 115
  bin: 1.75e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 32643
  bin: 6.25e1
  variant carriers: 6
hgvs: n.201+1G>A
num of homozygotes: 0
population: East Asian
population: Other
population: African
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
reference allele: C
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: QD
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP
site quality: ClippingRankSum

9-39103719-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103719
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103719
    reference: chr 9
allele count: 2
allele frequency: 1.712886041691646e-5
allele num: 116762
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+22A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.609A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.193A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*304A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+22A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.444A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+22A>G
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: 3' UTR
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 1382
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2163
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 66
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31526
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2733
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1031
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4314
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14009
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6093
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1932
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 912
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 869
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1269
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: Latino
population: East Asian
reference allele: T
site quality: DP
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: MQ

9-39103722-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103722
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103722
    reference: chr 9
allele count: 1
allele frequency: 8.531258531258532e-6
allele num: 117216
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.441A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*301A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+19A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.190A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+19A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.606A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+19A>G
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 14250
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 393
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 61
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 923
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31980
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1390
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2270
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 656
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4414
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2260
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 256
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 239
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2366
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 761
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 919
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1079
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1955
  bin: 7.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: European (Finnish)
population: Other
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: T
site quality: MQ
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: VQSLOD

9-39103725-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103725
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103725
    reference: chr 9
allele count: 1
allele frequency: 8.495310588555118e-6
allele num: 117712
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.187T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*298T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+16T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.438T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+16T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.603T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+16T>C
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32034
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1677
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4650
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 185
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1872
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 872
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1501
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 698
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 400
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14517
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 667
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4509
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 931
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 321
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1592
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 640
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 529
  bin: 5.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: Other
reference allele: A
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: MQRankSum
site quality: BaseQRankSum

9-39103728-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103728
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103728
    reference: chr 9
allele count: 1
allele frequency: 8.466110161025414e-6
allele num: 118118
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.435C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+13C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.600C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+13C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*295C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+13C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.184C>T
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14796
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4715
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1485
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1466
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 674
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1667
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 812
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32214
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1785
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 305
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37120
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 289
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 51
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 818
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: East Asian
population: Latino
population: Other
population: African
population: European (Non-Finnish)
reference allele: G
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: VQSLOD
site quality: QD
site quality: DP
site quality: ClippingRankSum

9-39103729-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103729
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103729
    reference: chr 9
allele count: 1
allele frequency: 8.461382251404589e-6
allele num: 118184
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+12A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*294A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.434A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+12A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.183A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+12A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.599A>G
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32190
  bin: 2.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4518
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36897
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
reference allele: T
site quality: ReadPosRankSum
site quality: QD
site quality: InbreedingCoeff
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: MQ

9-39103729-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103729
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103729
    reference: chr 9
allele count: 2
allele frequency: 1.692276450280918e-5
allele num: 118184
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+12A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.183A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+12A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*294A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.434A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.599A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+12A>C
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 789
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32190
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 45
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1468
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14926
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4726
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1607
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1450
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 788
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2441
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 388
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1742
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4518
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 36
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 561
  bin: 2.75e1
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: Other
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
reference allele: T
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: DP
site quality: ReadPosRankSum

9-39103732-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103732
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103732
    reference: chr 9
allele count: 1
allele frequency: 8.441098018030185e-6
allele num: 118468
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*291G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+9G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+9G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.180G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+9G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.431G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.596G>A
  variant of: http://identifiers.org/hgnc/13834
canonical: false
consequence: 3' UTR
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 662
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1463
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32181
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1417
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15261
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 291
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1298
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 632
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 752
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4805
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 342
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 959
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 552
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37249
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1673
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 364
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 50
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4524
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 1.75e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: Latino
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: C
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: FS
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: QD
site quality: DP

9-39103733-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103733
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103733
    reference: chr 9
allele count: 4
allele frequency: 3.370237433227171e-5
allele num: 118686
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.595C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.430C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+8C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*290C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+8C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+8C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.179C>T
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15388
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 32379
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 622
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1453
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37772
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 0
hgvs: c.2536+8C>T
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: South Asian
reference allele: G
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: QD
site quality: DP

9-39103733-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103733
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103733
    reference: chr 9
allele count: 39
allele frequency: 3.285981497396492e-4
allele num: 118686
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*290C>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+8C>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.179C>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+8C>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.430C>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.595C>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+8C>G
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1451
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 293
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15388
  bin: 2.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 8.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4823
  bin: 3.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1187
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32379
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 670
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1246
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 633
  bin: 9.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 150
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 397
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 685
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1703
  bin: 8.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 3.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 452
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 208
  bin: 4.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 270
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 1.75e1
  variant carriers: 0
hgvs: c.2536+8C>G
num of homozygotes: 2
population: European (Finnish)
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
reference allele: G
site quality: VQSLOD
site quality: MQ
site quality: ReadPosRankSum
site quality: DP
site quality: MQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: BaseQRankSum

9-39103735-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103735
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103735
    reference: chr 9
allele count: 1
allele frequency: 8.409863087428936e-6
allele num: 118908
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+6C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.177C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+6C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*288C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.428C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+6C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.593C>A
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1448
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 672
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 28
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 641
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15416
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32581
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1139
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1118
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4826
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 209
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 372
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 549
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 37979
  bin: 6.25e1
  variant carriers: 0
hgvs: c.2536+6C>A
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: Other
reference allele: G
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: MQ
site quality: FS
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-39103737-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103737
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103737
    reference: chr 9
allele count: 8
allele frequency: 6.718398333837214e-5
allele num: 119076
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*286A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.175A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2536+4A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.591A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2272+4A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: splice_region_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2533+4A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.426A>G
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: splice region
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1035
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15520
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1454
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 631
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 32711
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1043
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 671
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4860
  bin: 3.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 554
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 292
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 343
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 197
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 187
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 21
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 16
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 27
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 5.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 313
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 474
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2554
  bin: 7.75e1
  variant carriers: 0
hgvs: c.2536+4A>G
num of homozygotes: 0
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
reference allele: T
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD

http://identifiers.org/exac.variant/9-39103742-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103742
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103742
    reference: chr 9
allele count: 264
allele frequency: 2.215545745984324e-3
allele num: 119158
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*281T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.421T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.586T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2532T>G
  hgvsp: ENST00000377656.2:c.2532T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2535T>G
  hgvsp: ENST00000297668.6:c.2535T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2271T>G
  hgvsp: ENST00000358144.2:c.2271T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.170T>G
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: splice region
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 402
  bin: 1.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 15723
  bin: 2.75e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 837
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 6.75e1
  variant carriers: 14
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 15
genotype depth: GenotypeDepth
  all individuals: 16
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 430
  bin: 4.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 705
  bin: 4.25e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 5033
  bin: 3.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 32691
  bin: 2.25e1
  variant carriers: 21
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 7.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 7.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 637
  bin: 9.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 134
  bin: 8.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 317
  bin: 5.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 1493
  bin: 3.75e1
  variant carriers: 23
genotype quality: GenotypeQuality
  all individuals: 1037
  bin: 2.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 6490
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 375
  bin: 3.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 129
  bin: 4.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 186
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 196
  bin: 5.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 4691
  bin: 9.75e1
  variant carriers: 181
hgvs: c.2535T>G
num of homozygotes: 4
population: East Asian
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Latino
population: Other
reference allele: A
site quality: MQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: QD
site quality: ReadPosRankSum

9-39103743-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103743
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103743
    reference: chr 9
allele count: 25271
allele frequency: 2.109749378036767e-1
allele num: 119782
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.585G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.420G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2531G>A
  hgvsp: ENSP00000366884.2:p.Arg844His
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2534G>A
  hgvsp: ENSP00000297668.6:p.Arg845His
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*280G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.169G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2270G>A
  hgvsp: ENSP00000350863.2:p.Arg757His
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1102
  bin: 6.75e1
  variant carriers: 1004
genotype depth: GenotypeDepth
  all individuals: 431
  bin: 8.25e1
  variant carriers: 377
genotype depth: GenotypeDepth
  all individuals: 17
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 2751
  bin: 4.75e1
  variant carriers: 2543
genotype depth: GenotypeDepth
  all individuals: 2991
  bin: 3.75e1
  variant carriers: 2450
genotype depth: GenotypeDepth
  all individuals: 613
  bin: 1.75e1
  variant carriers: 355
genotype depth: GenotypeDepth
  all individuals: 12386
  bin: 2.75e1
  variant carriers: 1382
genotype depth: GenotypeDepth
  all individuals: 2419
  bin: 5.25e1
  variant carriers: 2242
genotype depth: GenotypeDepth
  all individuals: 594
  bin: 7.5e0
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 2013
  bin: 5.75e1
  variant carriers: 1850
genotype depth: GenotypeDepth
  all individuals: 1534
  bin: 9.75e1
  variant carriers: 1368
genotype depth: GenotypeDepth
  all individuals: 22298
  bin: 2.25e1
  variant carriers: 790
genotype depth: GenotypeDepth
  all individuals: 1581
  bin: 6.25e1
  variant carriers: 1454
genotype depth: GenotypeDepth
  all individuals: 661
  bin: 1.25e1
  variant carriers: 129
genotype depth: GenotypeDepth
  all individuals: 2778
  bin: 4.25e1
  variant carriers: 2518
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 8.75e1
  variant carriers: 261
genotype depth: GenotypeDepth
  all individuals: 572
  bin: 7.75e1
  variant carriers: 510
genotype depth: GenotypeDepth
  all individuals: 833
  bin: 7.25e1
  variant carriers: 742
genotype depth: GenotypeDepth
  all individuals: 4497
  bin: 3.25e1
  variant carriers: 1959
genotype depth: GenotypeDepth
  all individuals: 260
  bin: 9.25e1
  variant carriers: 233
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 5.75e1
  variant carriers: 52
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 1.75e1
  variant carriers: 16
genotype quality: GenotypeQuality
  all individuals: 228
  bin: 3.75e1
  variant carriers: 50
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 4.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 267
  bin: 3.25e1
  variant carriers: 38
genotype quality: GenotypeQuality
  all individuals: 343
  bin: 9.25e1
  variant carriers: 119
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 4.75e1
  variant carriers: 65
hgvs: p.Arg845His
num of homozygotes: 3165
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: African
population: Latino
reference allele: C
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: InbreedingCoeff
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

9-39103744-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103744
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103744
    reference: chr 9
allele count: 2
allele frequency: 1.667528222915173e-5
allele num: 119938
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.584C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.168C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*279C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2533C>T
  hgvsp: ENSP00000297668.6:p.Arg845Cys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2530C>T
  hgvsp: ENSP00000366884.2:p.Arg844Cys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.419C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2269C>T
  hgvsp: ENSP00000350863.2:p.Arg757Cys
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 625
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20902
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 621
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 479
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 546
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1895
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 219
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1814
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 269
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 205
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Arg845Cys
num of homozygotes: 0
population: South Asian
population: Other
population: East Asian
population: African
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

9-39103752-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103752
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103752
    reference: chr 9
allele count: 2
allele frequency: 1.6632569898375e-5
allele num: 120246
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.411T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2525T>C
  hgvsp: ENSP00000297668.6:p.Ile842Thr
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.576T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.160T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2261T>C
  hgvsp: ENSP00000350863.2:p.Ile754Thr
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*271T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2522T>C
  hgvsp: ENSP00000366884.2:p.Ile841Thr
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26459
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21078
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 246
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 375
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 403
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 476
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43993
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 618
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 0
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 108
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 118
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 106
  bin: 2.75e1
  variant carriers: 0
hgvs: p.Ile842Thr
num of homozygotes: 0
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: European (Non-Finnish)
population: Other
population: South Asian
reference allele: A
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-39103761-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103761
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103761
    reference: chr 9
allele count: 1
allele frequency: 8.306199747491528e-6
allele num: 120392
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.151T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.402T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2516T>G
  hgvsp: ENSP00000297668.6:p.Phe839Cys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*262T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.567T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2513T>G
  hgvsp: ENSP00000366884.2:p.Phe838Cys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2252T>G
  hgvsp: ENSP00000350863.2:p.Phe751Cys
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 722
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1882
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 179
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21204
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 321
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 26602
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 434
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6998
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 274
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 569
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 49
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 376
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1805
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 849
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Phe839Cys
num of homozygotes: 0
population: African
population: Latino
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: East Asian
population: Other
reference allele: A
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: BaseQRankSum
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-39103762-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103762
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103762
    reference: chr 9
allele count: 1
allele frequency: 8.304820117596252e-6
allele num: 120412
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2251T>C
  hgvsp: ENSP00000350863.2:p.Phe751Leu
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.401T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2512T>C
  hgvsp: ENSP00000366884.2:p.Phe838Leu
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.150T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*261T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.566T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2515T>C
  hgvsp: ENSP00000297668.6:p.Phe839Leu
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 320
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 426
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6995
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21212
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 95
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 118
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1884
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26628
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 373
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 178
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 477
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 275
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 70
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 74
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7230
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 307
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Phe839Leu
num of homozygotes: 0
population: African
population: Latino
population: European (Finnish)
population: East Asian
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: FS
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum

9-39103763-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103763
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103763
    reference: chr 9
allele count: 1415
allele frequency: 1.178145607140478e-2
allele num: 120104
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.565T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2250T>C
  hgvsp: ENST00000358144.2:c.2250T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.149T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.400T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*260T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2511T>C
  hgvsp: ENST00000377656.2:c.2511T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2514T>C
  hgvsp: ENST00000297668.6:c.2514T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1941
  bin: 3.75e1
  variant carriers: 144
genotype depth: GenotypeDepth
  all individuals: 552
  bin: 4.75e1
  variant carriers: 147
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 1.75e1
  variant carriers: 22
genotype depth: GenotypeDepth
  all individuals: 464
  bin: 5.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 259
  bin: 1.25e1
  variant carriers: 18
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 6.75e1
  variant carriers: 70
genotype depth: GenotypeDepth
  all individuals: 153
  bin: 7.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 9.25e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 318
  bin: 6.25e1
  variant carriers: 84
genotype depth: GenotypeDepth
  all individuals: 6964
  bin: 3.25e1
  variant carriers: 120
genotype depth: GenotypeDepth
  all individuals: 12
  bin: 2.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 791
  bin: 4.25e1
  variant carriers: 118
genotype depth: GenotypeDepth
  all individuals: 376
  bin: 7.5e0
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 21054
  bin: 2.75e1
  variant carriers: 78
genotype depth: GenotypeDepth
  all individuals: 26164
  bin: 2.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 7.25e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 120
  bin: 8.25e1
  variant carriers: 45
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 8.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 353
  bin: 9.75e1
  variant carriers: 126
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 5.75e1
  variant carriers: 103
genotype quality: GenotypeQuality
  all individuals: 769
  bin: 8.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 44
  bin: 1.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 3711
  bin: 9.75e1
  variant carriers: 1258
genotype quality: GenotypeQuality
  all individuals: 7072
  bin: 6.75e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 7.5e0
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 9.25e1
  variant carriers: 8
genotype quality: GenotypeQuality
  all individuals: 88
  bin: 2.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 528
  bin: 2.25e1
  variant carriers: 12
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 3.25e1
  variant carriers: 7
hgvs: p.Asp838Asp
num of homozygotes: 36
population: European (Finnish)
population: European (Non-Finnish)
population: African
population: Other
population: Latino
population: East Asian
population: South Asian
reference allele: A
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: MQ
site quality: MQRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum

9-39103766-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103766
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103766
    reference: chr 9
allele count: 3
allele frequency: 2.49260527102928e-5
allele num: 120356
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2247A>G
  hgvsp: ENST00000358144.2:c.2247A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2508A>G
  hgvsp: ENST00000377656.2:c.2508A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*257A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.397A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.146A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2511A>G
  hgvsp: ENST00000297668.6:c.2511A>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.562A>G
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 21650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 311
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2620
  bin: 9.75e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr837Thr
num of homozygotes: 0
population: Latino
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ReadPosRankSum

9-39103766-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103766
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103766
    reference: chr 9
allele count: 1
allele frequency: 8.308684236764266e-6
allele num: 120356
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.562A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.146A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2247A>C
  hgvsp: ENST00000358144.2:c.2247A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2511A>C
  hgvsp: ENST00000297668.6:c.2511A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*257A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2508A>C
  hgvsp: ENST00000377656.2:c.2508A>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.397A>C
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 300
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21650
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 243
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26403
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1838
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7023
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 132
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44853
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 61
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Thr837Thr
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: South Asian
reference allele: T
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD

9-39103771-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103771
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103771
    reference: chr 9
allele count: 1
allele frequency: 8.314348903337379e-6
allele num: 120274
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.141A>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2506A>T
  hgvsp: ENSP00000297668.6:p.Ile836Phe
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2503A>T
  hgvsp: ENSP00000366884.2:p.Ile835Phe
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2242A>T
  hgvsp: ENSP00000350863.2:p.Ile748Phe
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*252A>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.392A>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.557A>T
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 365
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 495
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 165
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26241
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1840
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 27
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21652
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 237
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 678
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 782
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 78
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7263
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Ile836Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: African
population: European (Finnish)
population: Latino
population: Other
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: QD
site quality: ClippingRankSum

9-39103772-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103772
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103772
    reference: chr 9
allele count: 2
allele frequency: 1.662869780667476e-5
allele num: 120274
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.140G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2502G>A
  hgvsp: ENST00000377656.2:c.2502G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.556G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2241G>A
  hgvsp: ENST00000358144.2:c.2241G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2505G>A
  hgvsp: ENST00000297668.6:c.2505G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*251G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.391G>A
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 421
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26228
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21659
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 410
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 129
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7017
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 493
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 241
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1842
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 679
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 238
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 301
  bin: 5.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 44682
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 779
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1716
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Gly835Gly
num of homozygotes: 0
population: East Asian
population: Other
population: European (Non-Finnish)
population: African
population: South Asian
population: European (Finnish)
population: Latino
reference allele: C
site quality: QD
site quality: DP
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ

9-39103774-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103774
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103774
    reference: chr 9
allele count: 1
allele frequency: 8.324038157390913e-6
allele num: 120134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*249G>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2239G>C
  hgvsp: ENSP00000350863.2:p.Gly747Arg
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.554G>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2500G>C
  hgvsp: ENSP00000366884.2:p.Gly834Arg
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2503G>C
  hgvsp: ENSP00000297668.6:p.Gly835Arg
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.138G>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.389G>C
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 34
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 501
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 189
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 26108
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 236
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 47
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 364
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 555
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 675
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 105
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 409
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1843
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7012
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21617
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 100
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1712
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 910
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 5.25e1
  variant carriers: 0
hgvs: p.Gly835Arg
num of homozygotes: 0
population: African
population: Other
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: FS
site quality: ReadPosRankSum
site quality: QD
site quality: DP
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: InbreedingCoeff

9-39103775-C-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103775
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103775
    reference: chr 9
allele count: 3784
allele frequency: 3.149816038756722e-2
allele num: 120134
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.137G>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2502G>C
  hgvsp: ENST00000297668.6:c.2502G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2499G>C
  hgvsp: ENST00000377656.2:c.2499G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.388G>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*248G>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2238G>C
  hgvsp: ENST00000358144.2:c.2238G>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.553G>C
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 1.75e1
  variant carriers: 30
genotype depth: GenotypeDepth
  all individuals: 531
  bin: 6.25e1
  variant carriers: 361
genotype depth: GenotypeDepth
  all individuals: 90
  bin: 9.25e1
  variant carriers: 58
genotype depth: GenotypeDepth
  all individuals: 314
  bin: 7.25e1
  variant carriers: 223
genotype depth: GenotypeDepth
  all individuals: 24604
  bin: 2.25e1
  variant carriers: 48
genotype depth: GenotypeDepth
  all individuals: 414
  bin: 6.75e1
  variant carriers: 291
genotype depth: GenotypeDepth
  all individuals: 35
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21006
  bin: 2.75e1
  variant carriers: 95
genotype depth: GenotypeDepth
  all individuals: 615
  bin: 5.75e1
  variant carriers: 394
genotype depth: GenotypeDepth
  all individuals: 1852
  bin: 3.75e1
  variant carriers: 224
genotype depth: GenotypeDepth
  all individuals: 831
  bin: 4.25e1
  variant carriers: 316
genotype depth: GenotypeDepth
  all individuals: 502
  bin: 1.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 6771
  bin: 3.25e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 452
  bin: 9.75e1
  variant carriers: 297
genotype depth: GenotypeDepth
  all individuals: 137
  bin: 8.75e1
  variant carriers: 86
genotype depth: GenotypeDepth
  all individuals: 231
  bin: 7.75e1
  variant carriers: 151
genotype depth: GenotypeDepth
  all individuals: 186
  bin: 8.25e1
  variant carriers: 127
genotype depth: GenotypeDepth
  all individuals: 540
  bin: 7.5e0
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 647
  bin: 5.25e1
  variant carriers: 410
genotype depth: GenotypeDepth
  all individuals: 706
  bin: 4.75e1
  variant carriers: 417
genotype quality: GenotypeQuality
  all individuals: 12
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 92
  bin: 5.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 891
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 6815
  bin: 6.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 5274
  bin: 9.75e1
  variant carriers: 3645
genotype quality: GenotypeQuality
  all individuals: 15
  bin: 1.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 4.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 77
  bin: 3.75e1
  variant carriers: 5
hgvs: p.Leu834Leu
num of homozygotes: 86
population: European (Finnish)
population: East Asian
population: African
population: South Asian
population: Latino
population: Other
population: European (Non-Finnish)
reference allele: C
site quality: MQRankSum
site quality: BaseQRankSum
site quality: MQ
site quality: QD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: DP

9-39103778-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103778
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103778
    reference: chr 9
allele count: 3
allele frequency: 2.498625755834291e-5
allele num: 120066
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2496C>A
  hgvsp: ENSP00000366884.2:p.Asn832Lys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2499C>A
  hgvsp: ENSP00000297668.6:p.Asn833Lys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.134C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2235C>A
  hgvsp: ENSP00000350863.2:p.Asn745Lys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*245C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.385C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.550C>A
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 44
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 588
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 190
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22543
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 5.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1864
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7446
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 128
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 25236
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 99
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 586
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 162
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 84
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 72
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7352
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 609
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1569
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 57
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Asn833Lys
num of homozygotes: 0
population: South Asian
population: Other
population: African
population: European (Non-Finnish)
population: East Asian
population: Latino
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: MQ
site quality: QD
site quality: FS
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: ReadPosRankSum
site quality: DP

9-39103785-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103785
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103785
    reference: chr 9
allele count: 1
allele frequency: 8.349057391420508e-6
allele num: 119774
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2489T>C
  hgvsp: ENSP00000366884.2:p.Met830Thr
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*238T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.127T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2492T>C
  hgvsp: ENSP00000297668.6:p.Met831Thr
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.378T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.543T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2228T>C
  hgvsp: ENSP00000350863.2:p.Met743Thr
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 249
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22496
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24985
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 62
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 763
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 83
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 582
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7377
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 98
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 127
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 175
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 163
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1308
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1732
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 156
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 128
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 202
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34
  bin: 4.25e1
  variant carriers: 0
hgvs: p.Met831Thr
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: A
site quality: VQSLOD
site quality: MQ
site quality: FS
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-39103787-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103787
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103787
    reference: chr 9
allele count: 366
allele frequency: 3.059586705009028e-3
allele num: 119624
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.541T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2487T>C
  hgvsp: ENST00000377656.2:c.2487T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2226T>C
  hgvsp: ENST00000358144.2:c.2226T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2490T>C
  hgvsp: ENST00000297668.6:c.2490T>C(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.376T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.125T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*236T>C
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 7.25e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 63
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 604
  bin: 4.25e1
  variant carriers: 37
genotype depth: GenotypeDepth
  all individuals: 146
  bin: 6.75e1
  variant carriers: 23
genotype depth: GenotypeDepth
  all individuals: 350
  bin: 4.75e1
  variant carriers: 51
genotype depth: GenotypeDepth
  all individuals: 792
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22363
  bin: 2.75e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 6.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 279
  bin: 5.75e1
  variant carriers: 56
genotype depth: GenotypeDepth
  all individuals: 883
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 309
  bin: 5.25e1
  variant carriers: 53
genotype depth: GenotypeDepth
  all individuals: 36
  bin: 9.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7328
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 167
  bin: 9.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 290
  bin: 1.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 24685
  bin: 2.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 1860
  bin: 3.75e1
  variant carriers: 26
genotype quality: GenotypeQuality
  all individuals: 573
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 98
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1729
  bin: 7.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7209
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 87
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 65
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe830Phe
num of homozygotes: 4
population: East Asian
population: South Asian
population: European (Finnish)
population: Other
population: African
population: Latino
population: European (Non-Finnish)
reference allele: A
site quality: DP
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum
site quality: ClippingRankSum

9-39103789-A-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103789
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103789
    reference: chr 9
allele count: 2
allele frequency: 1.672968180145214e-5
allele num: 119548
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.374T>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*234T>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.539T>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2485T>A
  hgvsp: ENSP00000366884.2:p.Phe829Ile
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2224T>A
  hgvsp: ENSP00000350863.2:p.Phe742Ile
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.123T>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2488T>A
  hgvsp: ENSP00000297668.6:p.Phe830Ile
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1850
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24678
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 960
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 838
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 570
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 64
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7389
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22480
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 123
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 308
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 296
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1580
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 570
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1735
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 132
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 168
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Phe830Ile
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
population: South Asian
population: African
population: East Asian
reference allele: A
site quality: DP
site quality: VQSLOD
site quality: FS
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: QD
site quality: BaseQRankSum

9-39103790-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103790
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103790
    reference: chr 9
allele count: 2
allele frequency: 1.674368762976358e-5
allele num: 119448
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2487G>A
  hgvsp: ENST00000297668.6:c.2487G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2223G>A
  hgvsp: ENST00000358144.2:c.2223G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*233G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.373G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.538G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.122G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2484G>A
  hgvsp: ENST00000377656.2:c.2484G>A(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7389
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 881
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 297
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 323
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 65
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 97
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24596
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1009
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 569
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1848
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22457
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1661
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1731
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 568
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 109
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 146
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Val829Val
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: European (Finnish)
population: African
population: East Asian
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: QD

http://identifiers.org/exac.variant/9-39103791-A-AC
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103791
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103792
    reference: chr 9
allele count: 18
allele frequency: 1.508649590988333e-4
allele num: 119312
alternate allele: AC
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2221dupG
  hgvsp: ENSP00000350863.2:p.Val741GlyfsTer15
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.536dupG
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2485dupG
  hgvsp: ENSP00000297668.6:p.Val829GlyfsTer15
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.120dupG
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.371dupG
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2482dupG
  hgvsp: ENSP00000366884.2:p.Val828GlyfsTer15
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*231dupG
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 1084
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1845
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 170
  bin: 6.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 7380
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 936
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 68
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 82
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 357
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 257
  bin: 5.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 24466
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 5.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 22429
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 566
  bin: 4.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 7
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 126
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1770
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 62
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1512
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 35
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7202
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Val829GlyfsTer15
num of homozygotes: 0
population: East Asian
population: European (Non-Finnish)
population: Latino
population: African
population: South Asian
population: Other
population: European (Finnish)
reference allele: A
site quality: MQ
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: DP
site quality: ClippingRankSum

9-39103795-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103795
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103795
    reference: chr 9
allele count: 2
allele frequency: 1.678471919164792e-5
allele num: 119156
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*228G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.368G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2218G>A
  hgvsp: ENSP00000350863.2:p.Gly740Arg
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2482G>A
  hgvsp: ENSP00000297668.6:p.Gly828Arg
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2479G>A
  hgvsp: ENSP00000366884.2:p.Gly827Arg
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.117G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.533G>A
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 561
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 59
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1012
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7334
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 369
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24373
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 168
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1214
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 299
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22361
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 121
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 96
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1496
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 148
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 9
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 85
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 8.25e1
  variant carriers: 0
hgvs: p.Gly828Arg
num of homozygotes: 0
population: African
population: South Asian
population: Other
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: East Asian
reference allele: C
site quality: MQ
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: ClippingRankSum

9-39103796-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103796
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103796
    reference: chr 9
allele count: 231
allele frequency: 1.943234012483806e-3
allele num: 118874
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*227C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2217C>T
  hgvsp: ENST00000358144.2:c.2217C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2481C>T
  hgvsp: ENST00000297668.6:c.2481C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.532C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2478C>T
  hgvsp: ENST00000377656.2:c.2478C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.367C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.116C>T
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 81
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 60
  bin: 8.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 5.75e1
  variant carriers: 17
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 6.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 32
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1846
  bin: 3.75e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 22266
  bin: 2.75e1
  variant carriers: 25
genotype depth: GenotypeDepth
  all individuals: 1350
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 386
  bin: 1.75e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 303
  bin: 4.75e1
  variant carriers: 16
genotype depth: GenotypeDepth
  all individuals: 1097
  bin: 7.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 24176
  bin: 2.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 7339
  bin: 3.25e1
  variant carriers: 33
genotype depth: GenotypeDepth
  all individuals: 575
  bin: 4.25e1
  variant carriers: 27
genotype depth: GenotypeDepth
  all individuals: 80
  bin: 7.75e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 174
  bin: 6.25e1
  variant carriers: 13
genotype depth: GenotypeDepth
  all individuals: 100
  bin: 7.25e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 262
  bin: 5.25e1
  variant carriers: 26
genotype depth: GenotypeDepth
  all individuals: 161
  bin: 9.75e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 2170
  bin: 2.25e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 93
  bin: 7.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 135
  bin: 8.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 134
  bin: 4.75e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 237
  bin: 3.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 1.25e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 190
  bin: 5.25e1
  variant carriers: 6
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 2.5e0
  variant carriers: 6
hgvs: p.Ser827Ser
num of homozygotes: 1
population: Other
population: European (Finnish)
population: African
population: Latino
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ReadPosRankSum
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: VQSLOD
site quality: QD
site quality: MQ
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

9-39103797-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103797
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103797
    reference: chr 9
allele count: 1
allele frequency: 8.4071763657458e-6
allele num: 118946
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2477C>T
  hgvsp: ENSP00000366884.2:p.Ser826Phe
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.115C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.366C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.531C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2216C>T
  hgvsp: ENSP00000350863.2:p.Ser739Phe
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*226C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2480C>T
  hgvsp: ENSP00000297668.6:p.Ser827Phe
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 542
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1812
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1364
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7343
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 113
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 24208
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22417
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 372
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 130
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 215
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 48
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 10
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 535
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 133
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
hgvs: p.Ser827Phe
num of homozygotes: 0
population: European (Finnish)
population: European (Non-Finnish)
population: East Asian
population: African
population: Latino
population: South Asian
population: Other
reference allele: G
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: VQSLOD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ClippingRankSum
site quality: QD
site quality: DP
site quality: MQ

9-39103804-CTG-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103804
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103802
    reference: chr 9
allele count: 2
allele frequency: 1.699004383431309e-5
allele num: 117716
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2471_2472delCA
  hgvsp: ENSP00000297668.6:p.Thr824SerfsTer19
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.106_107delCA
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2468_2469delCA
  hgvsp: ENSP00000366884.2:p.Thr823SerfsTer19
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.357_358delCA
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*217_*218delCA
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.522_523delCA
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2207_2208delCA
  hgvsp: ENSP00000350863.2:p.Thr736SerfsTer19
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL97.00to99.00
genotype depth: GenotypeDepth
  all individuals: 2071
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1678
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7169
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 538
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23457
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21839
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1780
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 627
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 228
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3199
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 362
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 43109
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 224
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 167
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 123
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 29
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 3.75e1
  variant carriers: 0
hgvs: p.Thr824SerfsTer19
num of homozygotes: 0
population: European (Finnish)
population: South Asian
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: CTG
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: BaseQRankSum
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum

9-39103808-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103808
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103808
    reference: chr 9
allele count: 1
allele frequency: 8.541314337450248e-6
allele num: 117078
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2205C>T
  hgvsp: ENST00000358144.2:c.2205C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*215C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.355C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2469C>T
  hgvsp: ENST00000297668.6:c.2469C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.520C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2466C>T
  hgvsp: ENST00000377656.2:c.2466C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.104C>T
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 537
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1991
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 122
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1769
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 23071
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2410
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 785
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7031
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 21554
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 205
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 147
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6914
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3755
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 71
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1643
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 514
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42489
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 166
  bin: 9.25e1
  variant carriers: 0
hgvs: p.Thr823Thr
num of homozygotes: 0
population: European (Non-Finnish)
population: Other
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: FS
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: QD
site quality: BaseQRankSum

9-39103813-TA-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103813
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103812
    reference: chr 9
allele count: 3
allele frequency: 2.593450672568208e-5
allele num: 115676
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*209delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.514delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2199delT
  hgvsp: ENSP00000350863.2:p.Phe733LeufsTer30
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.98delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.349delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2460delT
  hgvsp: ENSP00000366884.2:p.Phe820LeufsTer30
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2463delT
  hgvsp: ENSP00000297668.6:p.Phe821LeufsTer30
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: frameshift
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22091
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 94
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1751
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6881
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2654
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 20974
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 147
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 204
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 3175
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 533
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1061
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 163
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 230
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 217
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 418
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1600
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 40963
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 665
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 178
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Phe821LeufsTer30
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: Latino
population: South Asian
population: East Asian
population: Other
reference allele: TA
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum

9-39103820-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103820
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103820
    reference: chr 9
allele count: 1
allele frequency: 8.925383791503035e-6
allele num: 112040
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2454C>A
  hgvsp: ENSP00000366884.2:p.Phe818Leu
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2193C>A
  hgvsp: ENSP00000350863.2:p.Phe731Leu
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.343C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.508C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2457C>A
  hgvsp: ENSP00000297668.6:p.Phe819Leu
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.92C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*203C>A
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 6275
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19133
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 518
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2137
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4385
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19633
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5290
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1672
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 473
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6273
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 58
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1225
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 36359
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 458
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Phe819Leu
num of homozygotes: 0
population: Latino
population: African
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: Other
reference allele: G
site quality: VQSLOD
site quality: FS
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP

http://identifiers.org/exac.variant/9-39103821-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103821
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103821
    reference: chr 9
allele count: 2
allele frequency: 1.796590072043262e-5
allele num: 111322
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2456T>G
  hgvsp: ENSP00000297668.6:p.Phe819Cys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2453T>G
  hgvsp: ENSP00000366884.2:p.Phe818Cys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2192T>G
  hgvsp: ENSP00000350863.2:p.Phe731Cys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*202T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.507T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.342T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.91T>G
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 512
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 281
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19223
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5688
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1635
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 18735
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2436
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6066
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 227
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4735
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 240
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 161
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 14
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1320
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1346
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1030
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6227
  bin: 6.75e1
  variant carriers: 0
hgvs: p.Phe819Cys
num of homozygotes: 0
population: Other
population: African
population: European (Non-Finnish)
population: Latino
population: South Asian
population: European (Finnish)
population: East Asian
reference allele: A
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: DP
site quality: BaseQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: QD

9-39103823-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103823
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103823
    reference: chr 9
allele count: 1
allele frequency: 9.327662114767555e-6
allele num: 107208
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.89C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.340C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2454C>T
  hgvsp: ENST00000297668.6:c.2454C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*200C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.505C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2451C>T
  hgvsp: ENST00000377656.2:c.2451C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2190C>T
  hgvsp: ENST00000358144.2:c.2190C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5027
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1494
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1327
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 30038
  bin: 6.25e1
  variant carriers: 0
hgvs: p.Cys818Cys
num of homozygotes: 0
population: Latino
population: Other
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
population: African
population: East Asian
reference allele: G
site quality: DP
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: QD
site quality: FS
site quality: VQSLOD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum

9-39103823-GCA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103823
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103821
    reference: chr 9
allele count: 1
allele frequency: 9.327662114767555e-6
allele num: 107208
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2449_2450delTG
  hgvsp: ENSP00000366884.2:p.Cys817LeufsTer4
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.87_88delTG
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.338_339delTG
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2452_2453delTG
  hgvsp: ENSP00000297668.6:p.Cys818LeufsTer4
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.503_504delTG
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*198_*199delTG
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2188_2189delTG
  hgvsp: ENSP00000350863.2:p.Cys730LeufsTer4
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 7470
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1115
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 143
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 5027
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6513
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17030
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4108
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 363
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17315
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 92
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 248
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 834
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1694
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1817
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 743
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4167
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 323
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1807
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1475
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 7.5e0
  variant carriers: 0
hgvs: p.Cys818LeufsTer4
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: Other
reference allele: GCA
site quality: MQ
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: DP
site quality: ClippingRankSum

9-39103828-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103828
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103828
    reference: chr 9
allele count: 15
allele frequency: 1.419137542810649e-4
allele num: 105698
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2185G>A
  hgvsp: ENSP00000350863.2:p.Val729Met
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.500G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.335G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2449G>A
  hgvsp: ENSP00000297668.6:p.Val817Met
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*195G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2446G>A
  hgvsp: ENSP00000366884.2:p.Val816Met
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.84G>A
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 17202
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 112
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16839
  bin: 2.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 4632
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8014
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 144
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 712
  bin: 3.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 3989
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7220
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 282
  bin: 4.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 222
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12522
  bin: 2.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 278
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1593
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1646
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 300
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4012
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 95
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 155
  bin: 1.25e1
  variant carriers: 0
hgvs: p.Val817Met
num of homozygotes: 0
population: Latino
population: Other
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: African
population: South Asian
reference allele: C
site quality: BaseQRankSum
site quality: DP
site quality: FS
site quality: VQSLOD
site quality: MQ
site quality: QD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ClippingRankSum
site quality: ReadPosRankSum

9-39103829-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103829
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103829
    reference: chr 9
allele count: 8
allele frequency: 7.615856212634706e-5
allele num: 105044
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2448C>T
  hgvsp: ENST00000297668.6:c.2448C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*194C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.499C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.83C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2445C>T
  hgvsp: ENST00000377656.2:c.2445C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2184C>T
  hgvsp: ENST00000358144.2:c.2184C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.334C>T
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 157
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8204
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17223
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 91
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 221
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16572
  bin: 2.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 4837
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 453
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 141
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 264
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7518
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 592
  bin: 3.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 3658
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3934
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1491
  bin: 9.75e1
  variant carriers: 7
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 948
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 162
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12890
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 47
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1984
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 94
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Asp816Asp
num of homozygotes: 0
population: African
population: Latino
population: Other
population: East Asian
population: European (Finnish)
population: South Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: FS
site quality: MQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD

http://identifiers.org/exac.variant/9-39103856-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103856
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103856
    reference: chr 9
allele count: 69
allele frequency: 7.265758271381336e-4
allele num: 94966
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*167T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2157T>G
  hgvsp: ENST00000358144.2:c.2157T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.307T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.472T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2418T>G
  hgvsp: ENST00000377656.2:c.2418T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2421T>G
  hgvsp: ENST00000297668.6:c.2421T>G(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.56T>G
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 206
  bin: 5.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1973
  bin: 3.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11683
  bin: 7.5e0
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 4343
  bin: 1.75e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 10630
  bin: 1.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 395
  bin: 3.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 11447
  bin: 2.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 17309
  bin: 2.25e1
  variant carriers: 10
genotype depth: GenotypeDepth
  all individuals: 159
  bin: 6.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 140
  bin: 9.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 1234
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 239
  bin: 4.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 226
  bin: 4.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 51
  bin: 8.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 23121
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1952
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2036
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 893
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18673
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1329
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1532
  bin: 9.75e1
  variant carriers: 67
hgvs: p.Pro807Pro
num of homozygotes: 1
population: African
population: East Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
population: Latino
population: South Asian
reference allele: A
site quality: QD
site quality: FS
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: BaseQRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQ

9-39103857-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103857
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103857
    reference: chr 9
allele count: 1
allele frequency: 1.054162889249647e-5
allele num: 94862
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.306C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2156C>T
  hgvsp: ENSP00000350863.2:p.Pro719Leu
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.471C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2417C>T
  hgvsp: ENSP00000366884.2:p.Pro806Leu
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2420C>T
  hgvsp: ENSP00000297668.6:p.Pro807Leu
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.55C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*166C>T
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 11722
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 396
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1239
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11418
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10607
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4199
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1971
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17479
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1690
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 800
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1318
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1336
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 861
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 18781
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 2.5e0
  variant carriers: 0
hgvs: p.Pro807Leu
num of homozygotes: 0
population: Latino
population: African
population: South Asian
population: European (Finnish)
population: Other
population: East Asian
population: European (Non-Finnish)
reference allele: G
site quality: ClippingRankSum
site quality: MQ
site quality: DP
site quality: QD
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: FS

9-39103859-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103859
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103859
    reference: chr 9
allele count: 1
allele frequency: 1.055832418278571e-5
allele num: 94712
alternate allele: A
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2418C>T
  hgvsp: ENST00000297668.6:c.2418C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*164C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2415C>T
  hgvsp: ENST00000377656.2:c.2415C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2154C>T
  hgvsp: ENST00000358144.2:c.2154C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.469C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.53C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.304C>T
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 3834
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17806
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1938
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 235
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 10556
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1247
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11437
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 392
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1337
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25437
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1571
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 222
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 304
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 76
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1469
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19050
  bin: 2.25e1
  variant carriers: 0
hgvs: p.Phe806Phe
num of homozygotes: 0
population: South Asian
population: European (Non-Finnish)
population: East Asian
population: European (Finnish)
population: Latino
population: Other
population: African
reference allele: G
site quality: MQRankSum
site quality: FS
site quality: MQ
site quality: VQSLOD
site quality: QD
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: DP
site quality: InbreedingCoeff
site quality: ReadPosRankSum

9-39103872-G-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103872
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103872
    reference: chr 9
allele count: 1
allele frequency: 1.115523626790415e-5
allele num: 89644
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2402C>A
  hgvsp: ENSP00000366884.2:p.Ser801Ter
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: stop_gained
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2405C>A
  hgvsp: ENSP00000297668.6:p.Ser802Ter
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*151C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: stop_gained
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2141C>A
  hgvsp: ENSP00000350863.2:p.Ser714Ter
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.456C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.40C>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.291C>A
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: stop gained
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 225
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16679
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13734
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2992
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9785
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11860
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1790
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1746
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 96
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 22196
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1216
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1776
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 484
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 400
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 429
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 679
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Ser802Ter
num of homozygotes: 0
population: South Asian
population: Latino
population: African
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: East Asian
reference allele: G
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: QD
site quality: VQSLOD
site quality: BaseQRankSum

9-39103878-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103878
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103878
    reference: chr 9
allele count: 1
allele frequency: 1.148844262671752e-5
allele num: 87044
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.34A>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.450A>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2399A>T
  hgvsp: ENSP00000297668.6:p.Glu800Val
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2135A>T
  hgvsp: ENSP00000350863.2:p.Glu712Val
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*145A>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.285A>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2396A>T
  hgvsp: ENSP00000366884.2:p.Glu799Val
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1661
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 380
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 233
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2787
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2161
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15238
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14624
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9228
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12855
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 223
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2278
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 758
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1156
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 447
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 421
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23953
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 576
  bin: 4.75e1
  variant carriers: 0
hgvs: p.Glu800Val
num of homozygotes: 0
population: African
population: Latino
population: East Asian
population: European (Finnish)
population: South Asian
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: MQ
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: MQRankSum
site quality: FS
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: DP

9-39103879-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103879
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103879
    reference: chr 9
allele count: 1
allele frequency: 1.157032443189707e-5
allele num: 86428
alternate allele: T
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2398G>A
  hgvsp: ENSP00000297668.6:p.Glu800Lys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.449G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*144G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.284G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2395G>A
  hgvsp: ENSP00000366884.2:p.Glu799Lys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2134G>A
  hgvsp: ENSP00000350863.2:p.Glu712Lys
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.33G>A
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 14823
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2205
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 381
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 9153
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1657
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 14920
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2740
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13053
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2193
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2345
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 120
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 82
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1161
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 363
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 542
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1695
  bin: 3.25e1
  variant carriers: 0
hgvs: p.Glu800Lys
num of homozygotes: 0
population: East Asian
population: African
population: South Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: Other
reference allele: C
site quality: MQ
site quality: DP
site quality: ReadPosRankSum
site quality: MQRankSum
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: FS
site quality: QD

9-39103882-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103882
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103882
    reference: chr 9
allele count: 1
allele frequency: 1.177634368081398e-5
allele num: 84916
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.30A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.446A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2131A>C
  hgvsp: ENSP00000350863.2:p.Thr711Pro
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2395A>C
  hgvsp: ENSP00000297668.6:p.Thr799Pro
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.281A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*141A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2392A>C
  hgvsp: ENSP00000366884.2:p.Thr798Pro
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 2591
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14053
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 230
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8871
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 15388
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13645
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2396
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1589
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1464
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 184
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2522
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 139
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 635
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 348
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1054
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1641
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 8.75e1
  variant carriers: 0
hgvs: p.Thr799Pro
num of homozygotes: 0
population: East Asian
population: South Asian
population: European (Non-Finnish)
population: Latino
population: African
population: European (Finnish)
population: Other
reference allele: T
site quality: FS
site quality: DP
site quality: BaseQRankSum
site quality: MQ
site quality: ClippingRankSum
site quality: VQSLOD
site quality: MQRankSum
site quality: QD
site quality: ReadPosRankSum
site quality: InbreedingCoeff

9-39103884-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103884
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103884
    reference: chr 9
allele count: 5
allele frequency: 5.958339291672625e-5
allele num: 83916
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.444A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2393A>G
  hgvsp: ENSP00000297668.6:p.Asn798Ser
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.279A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*139A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2129A>G
  hgvsp: ENSP00000350863.2:p.Asn710Ser
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.28A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: missense_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2390A>G
  hgvsp: ENSP00000366884.2:p.Asn797Ser
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: missense
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14225
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 229
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13247
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8548
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2573
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 138
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 54
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 377
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2587
  bin: 1.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15765
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 158
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 203
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1569
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 88
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 73
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 685
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 294
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 119
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 486
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 480
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19493
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26397
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1663
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 342
  bin: 7.75e1
  variant carriers: 0
hgvs: p.Asn798Ser
num of homozygotes: 0
population: Latino
population: South Asian
population: European (Non-Finnish)
population: African
population: Other
population: East Asian
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ClippingRankSum
site quality: FS
site quality: ReadPosRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: QD
site quality: DP
site quality: MQRankSum

9-39103904-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103904
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103904
    reference: chr 9
allele count: 673
allele frequency: 9.529338468509289e-3
allele num: 70624
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*119C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2109C>T
  hgvsp: ENST00000358144.2:c.2109C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.424C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.8C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.259C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2370C>T
  hgvsp: ENST00000377656.2:c.2370C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: synonymous_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2373C>T
  hgvsp: ENST00000297668.6:c.2373C>T(p.%3D)
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: synonymous
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 202
  bin: 5.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18750
  bin: 7.5e0
  variant carriers: 91
genotype depth: GenotypeDepth
  all individuals: 18989
  bin: 1.25e1
  variant carriers: 243
genotype depth: GenotypeDepth
  all individuals: 2242
  bin: 1.75e1
  variant carriers: 167
genotype depth: GenotypeDepth
  all individuals: 1228
  bin: 3.25e1
  variant carriers: 32
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 232
  bin: 4.25e1
  variant carriers: 11
genotype depth: GenotypeDepth
  all individuals: 5298
  bin: 2.75e1
  variant carriers: 63
genotype depth: GenotypeDepth
  all individuals: 224
  bin: 4.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 5341
  bin: 2.5e0
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 5.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 356
  bin: 3.75e1
  variant carriers: 19
genotype depth: GenotypeDepth
  all individuals: 6221
  bin: 2.25e1
  variant carriers: 96
genotype depth: GenotypeDepth
  all individuals: 160
  bin: 6.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 89
  bin: 7.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 136
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 30
  bin: 9.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 55
  bin: 8.25e1
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 5755
  bin: 7.5e0
  variant carriers: 3
genotype quality: GenotypeQuality
  all individuals: 345
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 216
  bin: 7.25e1
  variant carriers: 24
genotype quality: GenotypeQuality
  all individuals: 677
  bin: 3.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 236
  bin: 4.25e1
  variant carriers: 13
genotype quality: GenotypeQuality
  all individuals: 1362
  bin: 3.25e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 699
  bin: 1.75e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 241
  bin: 5.25e1
  variant carriers: 15
genotype quality: GenotypeQuality
  all individuals: 485
  bin: 2.5e0
  variant carriers: 1
hgvs: p.Phe791Phe
num of homozygotes: 4
population: African
population: Other
population: South Asian
population: Latino
population: European (Non-Finnish)
population: European (Finnish)
population: East Asian
reference allele: G
site quality: MQRankSum
site quality: DP
site quality: QD
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: FS

9-39103909-ACT-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103909
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103907
    reference: chr 9
allele count: 1
allele frequency: 1.50159168718842e-5
allele num: 66596
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417_418delAG
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: 3_prime_UTR_variant
  consequence: splice_region_variant
  consequence: NMD_transcript_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*112_*113delAG
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2366_2367delAG
  hgvsp: ENSP00000297668.6:p.Gln789LeufsTer11
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2363_2364delAG
  hgvsp: ENSP00000366884.2:p.Gln788LeufsTer11
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000483502
  gene symbol: CNTNAP3
  hgvsc: ENST00000483502.2:n.1_2delAG
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: frameshift_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2102_2103delAG
  hgvsp: ENSP00000350863.2:p.Gln701LeufsTer11
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: non_coding_transcript_exon_variant
  consequence: splice_region_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.252_253delAG
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: frameshift
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 6653
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4381
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4476
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 2004
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 219
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19849
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1135
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19410
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 336
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 69
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 34874
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 204
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 279
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 392
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2117
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 887
  bin: 1.75e1
  variant carriers: 0
hgvs: p.Gln789LeufsTer11
num of homozygotes: 0
population: European (Finnish)
population: Latino
population: African
population: Other
population: South Asian
population: East Asian
population: European (Non-Finnish)
reference allele: ACT
site quality: DP
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: ClippingRankSum

9-39103922-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103922
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103922
    reference: chr 9
allele count: 2
allele frequency: 3.707136237256719e-5
allele num: 53950
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2366-11A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-11A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.252-11A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*112-11A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2102-11A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2363-11A>G
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 2.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33661
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
num of homozygotes: 0
population: African
population: East Asian
population: European (Non-Finnish)
population: European (Finnish)
population: Latino
population: South Asian
population: Other
reference allele: T
site quality: BaseQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: VQSLOD
site quality: FS
site quality: ClippingRankSum
site quality: DP
site quality: MQRankSum
site quality: MQ

9-39103922-T-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103922
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103922
    reference: chr 9
allele count: 1
allele frequency: 1.85356811862836e-5
allele num: 53950
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2363-11A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*112-11A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2366-11A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-11A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.252-11A>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2102-11A>C
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19338
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 379
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 136
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 64
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 42
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33661
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 947
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: Latino
population: East Asian
population: African
population: European (Finnish)
population: Other
population: European (Non-Finnish)
reference allele: T
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: InbreedingCoeff
site quality: QD
site quality: FS
site quality: MQ
site quality: ClippingRankSum
site quality: BaseQRankSum

9-39103922-T-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103922
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103922
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 53950
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.252-11A>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2102-11A>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2363-11A>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-11A>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*112-11A>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2366-11A>T
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: AC_Adj0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1168
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19707
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 846
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 2095
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1696
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12261
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 218
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 200
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19338
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 850
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 33661
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1205
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 13286
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3208
  bin: 6.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 60
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 575
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2167
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1420
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 80
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 151
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 439
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Finnish)
population: African
population: European (Non-Finnish)
population: South Asian
population: Other
population: Latino
population: East Asian
reference allele: T
site quality: QD
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: FS
site quality: MQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: ReadPosRankSum

9-39103931-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103931
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103931
    reference: chr 9
allele count: 9
allele frequency: 2.186588921282799e-4
allele num: 41160
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-20G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.252-20G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2366-20G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2363-20G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*112-20G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2102-20G>A
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.80to99.90
genotype depth: GenotypeDepth
  all individuals: 1114
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 210
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1278
  bin: 1.75e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 15885
  bin: 1.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 529
  bin: 2.25e1
  variant carriers: 2
genotype depth: GenotypeDepth
  all individuals: 217
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 286
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 156
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18997
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 17761
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 573
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1421
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19222
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 25
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 112
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 373
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 27190
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1066
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 978
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 117
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1700
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
population: Latino
population: Other
population: East Asian
reference allele: C
site quality: ReadPosRankSum
site quality: MQ
site quality: VQSLOD
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: DP

9-39103932-G-A
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103932
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103932
    reference: chr 9
allele count: 2
allele frequency: 5.066882853668423e-5
allele num: 39472
alternate allele: A
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.252-21C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2363-21C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*112-21C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2102-21C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-21C>T
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2366-21C>T
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18406
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1151
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 541
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1051
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 491
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15358
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 111
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1417
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 19871
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 144
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1481
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1028
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 357
  bin: 6.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 38
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 31
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1923
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 26377
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1419
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1099
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: Other
population: European (Non-Finnish)
population: Latino
population: European (Finnish)
population: South Asian
population: East Asian
population: African
reference allele: G
site quality: QD
site quality: DP
site quality: FS
site quality: InbreedingCoeff
site quality: MQ
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: ClippingRankSum
site quality: MQRankSum
site quality: BaseQRankSum

9-39103934-C-T
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103934
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103934
    reference: chr 9
allele count: 2
allele frequency: 5.397236614853195e-5
allele num: 37056
alternate allele: T
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2102-23G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-23G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2366-23G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*112-23G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2363-23G>A
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.252-23G>A
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 507
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1044
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 18898
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 214
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 14392
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 19559
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 919
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 428
  bin: 2.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 201
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 211
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 280
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 41
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1163
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21086
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1418
  bin: 9.75e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 111
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 284
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2079
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 24876
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1513
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 67
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1886
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1008
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: South Asian
population: Other
population: African
population: Latino
population: European (Finnish)
population: East Asian
reference allele: C
site quality: VQSLOD
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: ReadPosRankSum
site quality: FS
site quality: QD
site quality: ClippingRankSum
site quality: MQ
site quality: BaseQRankSum
site quality: DP

9-39103939-G-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103939
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103939
    reference: chr 9
allele count: 0
allele frequency: 0.0e0
allele num: 30506
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.252-28C>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2366-28C>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-28C>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2102-28C>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2363-28C>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*112-28C>G
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 420
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 29
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 154
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 22032
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 130
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 84
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 198
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 11694
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 856
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 19012
  bin: 7.5e0
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 72
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 266
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 216
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 346
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 50
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 52
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 721
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 23483
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1414
  bin: 9.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 45
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1448
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 103
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1748
  bin: 1.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 66
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 110
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 28
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 244
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1684
  bin: 2.5e0
  variant carriers: 0
num of homozygotes: 0
population: European (Non-Finnish)
population: Latino
population: Other
population: African
population: East Asian
population: South Asian
population: European (Finnish)
reference allele: G
site quality: BaseQRankSum
site quality: InbreedingCoeff
site quality: MQ
site quality: MQRankSum
site quality: FS
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: DP

9-39103940-GA-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39103940
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39103939
    reference: chr 9
allele count: 190
allele frequency: 6.534149528853428e-3
allele num: 29078
alternate allele: G
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.252-30delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-30delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2366-30delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2102-30delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*112-30delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2363-30delT
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 152
  bin: 6.25e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 811
  bin: 1.75e1
  variant carriers: 20
genotype depth: GenotypeDepth
  all individuals: 255
  bin: 3.75e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 418
  bin: 3.25e1
  variant carriers: 12
genotype depth: GenotypeDepth
  all individuals: 18931
  bin: 7.5e0
  variant carriers: 137
genotype depth: GenotypeDepth
  all individuals: 682
  bin: 2.75e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 191
  bin: 5.75e1
  variant carriers: 4
genotype depth: GenotypeDepth
  all individuals: 209
  bin: 4.25e1
  variant carriers: 5
genotype depth: GenotypeDepth
  all individuals: 22594
  bin: 2.5e0
  variant carriers: 24
genotype depth: GenotypeDepth
  all individuals: 215
  bin: 5.25e1
  variant carriers: 8
genotype depth: GenotypeDepth
  all individuals: 322
  bin: 2.25e1
  variant carriers: 9
genotype depth: GenotypeDepth
  all individuals: 11218
  bin: 1.25e1
  variant carriers: 75
genotype depth: GenotypeDepth
  all individuals: 116
  bin: 6.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 46
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 71
  bin: 7.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 53
  bin: 8.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 86
  bin: 7.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 131
  bin: 9.75e1
  variant carriers: 7
genotype depth: GenotypeDepth
  all individuals: 212
  bin: 4.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 31
  bin: 9.25e1
  variant carriers: 2
genotype quality: GenotypeQuality
  all individuals: 255
  bin: 3.75e1
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 17
  bin: 5.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 127
  bin: 7.25e1
  variant carriers: 31
genotype quality: GenotypeQuality
  all individuals: 2255
  bin: 2.5e0
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 20291
  bin: 2.25e1
  variant carriers: 4
genotype quality: GenotypeQuality
  all individuals: 23848
  bin: 7.5e0
  variant carriers: 10
genotype quality: GenotypeQuality
  all individuals: 1644
  bin: 1.75e1
  variant carriers: 25
genotype quality: GenotypeQuality
  all individuals: 105
  bin: 8.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 70
  bin: 8.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 921
  bin: 6.25e1
  variant carriers: 11
genotype quality: GenotypeQuality
  all individuals: 54
  bin: 4.75e1
  variant carriers: 17
genotype quality: GenotypeQuality
  all individuals: 238
  bin: 6.75e1
  variant carriers: 13
num of homozygotes: 7
population: East Asian
population: Latino
population: European (Non-Finnish)
population: African
population: Other
population: South Asian
population: European (Finnish)
reference allele: GA
site quality: MQ
site quality: ClippingRankSum
site quality: MQRankSum
site quality: DP
site quality: VQSLOD
site quality: BaseQRankSum
site quality: FS
site quality: InbreedingCoeff
site quality: QD
site quality: ReadPosRankSum

9-39109106-T-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39109106
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39109106
    reference: chr 9
allele count: 3
allele frequency: 2.939216992593173e-5
allele num: 102068
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2365+51A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-5195A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2362+51A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.128+51A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*111+51A>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2101+51A>G
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 4024
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8250
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 576
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1142
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16864
  bin: 1.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 9630
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15878
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 725
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1233
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 388
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2434
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1816
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 8053
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 188
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6404
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 460
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 499
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7426
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 4731
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3922
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 846
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6097
  bin: 4.75e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: African
population: South Asian
population: European (Non-Finnish)
population: Other
population: European (Finnish)
reference allele: T
site quality: InbreedingCoeff
site quality: DP
site quality: FS
site quality: MQRankSum
site quality: BaseQRankSum
site quality: ClippingRankSum
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: QD
site quality: MQ

http://identifiers.org/exac.variant/9-39109110-C-CA
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39109110
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39109111
    reference: chr 9
allele count: 2
allele frequency: 2.018407879864363e-5
allele num: 99088
alternate allele: CA
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2362+46dupT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-5200dupT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2365+46dupT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*111+46dupT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2101+46dupT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.128+46dupT
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16593
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13356
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12172
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7086
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7128
  bin: 3.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 3104
  bin: 9.75e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 214
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2481
  bin: 5.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 12233
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 7.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7373
  bin: 2.25e1
  variant carriers: 0
num of homozygotes: 0
population: South Asian
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Other
population: Latino
reference allele: C
site quality: QD
site quality: VQSLOD
site quality: ReadPosRankSum
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: InbreedingCoeff
site quality: MQRankSum
site quality: DP
site quality: ClippingRankSum

http://identifiers.org/exac.variant/9-39109110-CA-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39109110
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39109109
    reference: chr 9
allele count: 5
allele frequency: 5.046019699660908e-5
allele num: 99088
alternate allele: C
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2101+46delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2365+46delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.128+46delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-5200delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*111+46delT
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2362+46delT
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: VQSRTrancheINDEL99.50to99.90
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 389
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8021
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 13356
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 581
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 16593
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 1090
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 12172
  bin: 2.25e1
  variant carriers: 3
genotype depth: GenotypeDepth
  all individuals: 4403
  bin: 2.75e1
  variant carriers: 6
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1368
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 738
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 428
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1094
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3465
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 488
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 7373
  bin: 2.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1208
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1071
  bin: 1.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 339
  bin: 9.25e1
  variant carriers: 1
genotype quality: GenotypeQuality
  all individuals: 1536
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1435
  bin: 1.75e1
  variant carriers: 5
genotype quality: GenotypeQuality
  all individuals: 3857
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 5298
  bin: 4.75e1
  variant carriers: 1
num of homozygotes: 0
population: African
population: East Asian
population: European (Finnish)
population: European (Non-Finnish)
population: Latino
population: South Asian
population: Other
reference allele: CA
site quality: ClippingRankSum
site quality: InbreedingCoeff
site quality: FS
site quality: BaseQRankSum
site quality: MQ
site quality: ReadPosRankSum
site quality: VQSLOD
site quality: DP
site quality: MQRankSum
site quality: QD

9-39109115-A-G
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39109115
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39109115
    reference: chr 9
allele count: 3
allele frequency: 2.904443799012489e-5
allele num: 103290
alternate allele: G
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2365+42T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-5204T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*111+42T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2101+42T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.128+42T>C
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2362+42T>C
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: PASS
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15619
  bin: 1.25e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 17971
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8033
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1312
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 918
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4824
  bin: 2.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 733
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8342
  bin: 1.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 750
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 3588
  bin: 2.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1898
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6380
  bin: 3.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 548
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 306
  bin: 5.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 63
  bin: 2.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6915
  bin: 3.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 518
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 455
  bin: 8.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 19792
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 465
  bin: 1.25e1
  variant carriers: 0
num of homozygotes: 0
population: East Asian
population: Latino
population: Other
population: European (Non-Finnish)
population: African
population: European (Finnish)
population: South Asian
reference allele: A
site quality: InbreedingCoeff
site quality: VQSLOD
site quality: MQ
site quality: DP
site quality: ClippingRankSum
site quality: BaseQRankSum
site quality: QD
site quality: MQRankSum
site quality: FS
site quality: ReadPosRankSum

http://identifiers.org/exac.variant/9-39109116-A-C
type: Variant
location: Region
  begin: Position
    type: ExactPosition
    position: 39109116
    reference: chr 9
  end: Position
    type: ExactPosition
    position: 39109116
    reference: chr 9
allele count: 1
allele frequency: 9.678293523285975e-6
allele num: 103324
alternate allele: C
annotation: Annotation
  canonical: true
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000297668
  ensembl transcript: ENST00000297668
  gene symbol: CNTNAP3
  hgvsc: ENST00000297668.6:c.2365+41T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000350863
  ensembl transcript: ENST00000358144
  gene symbol: CNTNAP3
  hgvsc: ENST00000358144.2:c.2101+41T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: NMD_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000432863
  ensembl transcript: ENST00000443583
  gene symbol: CNTNAP3
  hgvsc: ENST00000443583.2:c.*111+41T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000448573
  gene symbol: CNTNAP3
  hgvsc: ENST00000448573.2:n.417-5205T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: non_coding_transcript_variant
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl transcript: ENST00000495573
  gene symbol: CNTNAP3
  hgvsc: ENST00000495573.2:n.128+41T>G
  variant of: http://identifiers.org/hgnc/13834
annotation: Annotation
  canonical: false
  consequence: intron_variant
  ensembl gene: ENSG00000106714
  ensembl protein: ENSP00000366884
  ensembl transcript: ENST00000377656
  gene symbol: CNTNAP3
  hgvsc: ENST00000377656.2:c.2362+41T>G
  variant of: http://identifiers.org/hgnc/13834
canonical: true
consequence: intron
filter: VQSRTrancheSNP99.60to99.80
genotype depth: GenotypeDepth
  all individuals: 19295
  bin: 2.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 78
  bin: 8.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 862
  bin: 2.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 269
  bin: 5.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 578
  bin: 4.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 1315
  bin: 3.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 732
  bin: 3.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 8056
  bin: 7.5e0
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 15228
  bin: 1.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 497
  bin: 9.75e1
  variant carriers: 1
genotype depth: GenotypeDepth
  all individuals: 135
  bin: 7.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 324
  bin: 5.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 85
  bin: 8.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 176
  bin: 6.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 213
  bin: 6.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 387
  bin: 4.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 7406
  bin: 1.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 4861
  bin: 2.75e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 74
  bin: 9.25e1
  variant carriers: 0
genotype depth: GenotypeDepth
  all individuals: 110
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 448
  bin: 1.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2738
  bin: 4.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 1937
  bin: 6.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 229
  bin: 8.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 21145
  bin: 6.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 554
  bin: 7.75e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 346
  bin: 9.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 719
  bin: 7.5e0
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 427
  bin: 1.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 2382
  bin: 4.25e1
  variant carriers: 0
genotype quality: GenotypeQuality
  all individuals: 6773
  bin: 3.25e1
  variant carriers: 0
num of homozygotes: 0
reference allele: A

GenotypeQuality
all individuals: 1643
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 17263
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3795
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2709
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1908
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 662
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4744
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4320
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 974
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 504
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9604
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11020
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 63868
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.453385672227674e-4
allele num: 8152
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13616
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 3.068e0

VQSLOD
type: SiteQuality
SIO_000300: -1.834e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.66e0

QD
type: SiteQuality
SIO_000300: 1.565e1

MQ
type: SiteQuality
SIO_000300: 5.131e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQRankSum
type: SiteQuality
SIO_000300: 1.48e0

DP
type: SiteQuality
SIO_000300: 1.408525e6

ClippingRankSum
type: SiteQuality
SIO_000300: 3.8e-2

GenotypeQuality
all individuals: 1858
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1269
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1629
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4425
bin: 3.75e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 6.25e1
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GenotypeQuality
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 4853
bin: 6.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9614
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.130380341211457e-5
allele num: 63890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8158
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11030
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13592
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -9.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: 1.42e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.313e0

MQRankSum
type: SiteQuality
SIO_000300: -1.398e0

FS
type: SiteQuality
SIO_000300: 1.665e0

MQ
type: SiteQuality
SIO_000300: 4.554e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.754e0

QD
type: SiteQuality
SIO_000300: 4.55e0

DP
type: SiteQuality
SIO_000300: 1.428039e6

GenotypeQuality
all individuals: 541
bin: 8.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 814
bin: 9.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8188
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11096
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13792
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 854
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.556468683850081e-5
allele num: 64248
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 3.662e0

MQRankSum
type: SiteQuality
SIO_000300: 4.86e-1

VQSLOD
type: SiteQuality
SIO_000300: -9.77e-1

DP
type: SiteQuality
SIO_000300: 1.495818e6

MQ
type: SiteQuality
SIO_000300: 5.094e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.068e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.9e-2

QD
type: SiteQuality
SIO_000300: 2.153e1

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 4.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6498
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 860
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11110
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9674
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.554098156839586e-5
allele num: 64346
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13804
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.124e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.37e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.22e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.97e0

MQ
type: SiteQuality
SIO_000300: 4.869e1

ClippingRankSum
type: SiteQuality
SIO_000300: -4.0e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.502418e6

VQSLOD
type: SiteQuality
SIO_000300: -2.092e0

GenotypeQuality
all individuals: 167
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2600
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64426
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6506
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 7.222302470027445e-5
allele num: 13846
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 862
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11112
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8206
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9678
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 8.49e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.96e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

MQ
type: SiteQuality
SIO_000300: 4.462e1

DP
type: SiteQuality
SIO_000300: 1.508788e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.36e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.673e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 2.103e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.42e0

GenotypeQuality
all individuals: 2227
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 5638
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 566
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GenotypeQuality
all individuals: 4503
bin: 9.75e1
variant carriers: 1

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9658
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8244
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13326
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11116
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6502
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 856
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64538
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.49e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

DP
type: SiteQuality
SIO_000300: 1.527285e6

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 6.59e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.929e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.01e-2

MQRankSum
type: SiteQuality
SIO_000300: -1.48e0

GenotypeQuality
all individuals: 4503
bin: 9.75e1
variant carriers: 119

GenotypeQuality
all individuals: 373
bin: 5.25e1
variant carriers: 7

GenotypeQuality
all individuals: 1716
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 835
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variant carriers: 0

GenotypeQuality
all individuals: 1772
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 120
bin: 1.25e1
variant carriers: 14

GenotypeQuality
all individuals: 614
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variant carriers: 11

GenotypeQuality
all individuals: 2168
bin: 7.75e1
variant carriers: 7

GenotypeQuality
all individuals: 592
bin: 4.25e1
variant carriers: 15

GenotypeQuality
all individuals: 210
bin: 7.5e0
variant carriers: 20

East Asian
type: Population
allele count: 15
allele frequency: 1.819505094614265e-3
allele num: 8244
num of homozygotes: 0

Other
type: Population
allele count: 2
allele frequency: 2.336448598130841e-3
allele num: 856
num of homozygotes: 0

African
type: Population
allele count: 24
allele frequency: 2.484986539656244e-3
allele num: 9658
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 70
allele frequency: 1.08463230964703e-3
allele num: 64538
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 12
allele frequency: 1.845585973546601e-3
allele num: 6502
num of homozygotes: 0

Latino
type: Population
allele count: 2
allele frequency: 1.799208348326736e-4
allele num: 11116
num of homozygotes: 0

South Asian
type: Population
allele count: 94
allele frequency: 7.053879633798589e-3
allele num: 13326
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.49e1

MQRankSum
type: SiteQuality
SIO_000300: -1.48e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.7e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.929e0

QD
type: SiteQuality
SIO_000300: 6.59e0

VQSLOD
type: SiteQuality
SIO_000300: 5.44e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.01e-2

DP
type: SiteQuality
SIO_000300: 1.527285e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.06e0

GenotypeQuality
all individuals: 284
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 4479
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variant carriers: 2

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14584
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9842
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11264
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 2.383222116301239e-4
allele num: 8392
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.572834e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.3e-1

MQRankSum
type: SiteQuality
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FS
type: SiteQuality
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QD
type: SiteQuality
SIO_000300: 1.586e1

VQSLOD
type: SiteQuality
SIO_000300: -2.922e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.76e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.95e0

MQ
type: SiteQuality
SIO_000300: 4.868e1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.527977263698316e-5
allele num: 65446
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6536
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11290
num of homozygotes: 0

African
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allele count: 0
allele frequency: 0.0e0
allele num: 9886
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East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8464
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14708
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 5.028e1

QD
type: SiteQuality
SIO_000300: 9.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.55e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -6.8e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.97e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.204e0

DP
type: SiteQuality
SIO_000300: 1.583879e6

VQSLOD
type: SiteQuality
SIO_000300: -1.812e0

GenotypeQuality
all individuals: 1964
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 36318
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8488
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
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South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14938
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11332
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.524204365321302e-5
allele num: 65608
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.6e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -1.209e0

DP
type: SiteQuality
SIO_000300: 1.598569e6

QD
type: SiteQuality
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ClippingRankSum
type: SiteQuality
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MQ
type: SiteQuality
SIO_000300: 4.878e1

MQRankSum
type: SiteQuality
SIO_000300: -1.11e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.75e0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 609
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variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6546
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15048
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8520
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11364
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Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
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African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9970
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.52031135976648e-5
allele num: 65776
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQ
type: SiteQuality
SIO_000300: 4.925e1

MQRankSum
type: SiteQuality
SIO_000300: -1.151e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.11e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.867e0

VQSLOD
type: SiteQuality
SIO_000300: -1.587e0

QD
type: SiteQuality
SIO_000300: 1.228e1

DP
type: SiteQuality
SIO_000300: 1.604841e6

ClippingRankSum
type: SiteQuality
SIO_000300: 4.7e-2

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
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GenotypeQuality
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bin: 4.75e1
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GenotypeQuality
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bin: 8.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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bin: 3.75e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.75e1
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15080
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9968
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.519710647092794e-5
allele num: 65802
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.60713e6

VQSLOD
type: SiteQuality
SIO_000300: -5.927e-1

FS
type: SiteQuality
SIO_000300: 4.919e0

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQ
type: SiteQuality
SIO_000300: 4.762e1

GenotypeQuality
all individuals: 474
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2003
bin: 7.25e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1640
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GenotypeQuality
all individuals: 944
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15080
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65802
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11370
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 2.006420545746388e-4
allele num: 9968
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8522
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.159e0

MQ
type: SiteQuality
SIO_000300: 4.762e1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.01e0

MQRankSum
type: SiteQuality
SIO_000300: 4.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.927e-1

QD
type: SiteQuality
SIO_000300: 1.415e1

FS
type: SiteQuality
SIO_000300: 4.919e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 7.0e-4

DP
type: SiteQuality
SIO_000300: 1.60713e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.21e-1

GenotypeQuality
all individuals: 709
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2472
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 507
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variant carriers: 0

GenotypeQuality
all individuals: 661
bin: 8.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15172
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.988014382740711e-5
allele num: 10012
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11386
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8548
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65898
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6558
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.658e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.81e0

MQ
type: SiteQuality
SIO_000300: 5.044e1

ClippingRankSum
type: SiteQuality
SIO_000300: 8.52e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.45e0

FS
type: SiteQuality
SIO_000300: 6.179e0

VQSLOD
type: SiteQuality
SIO_000300: -1.409e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.0e-4

QD
type: SiteQuality
SIO_000300: 3.86e0

DP
type: SiteQuality
SIO_000300: 1.61384e6

GenotypeQuality
all individuals: 46
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 9.75e1
variant carriers: 4

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 1703
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variant carriers: 0

GenotypeQuality
all individuals: 2059
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8558
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10042
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 1.118568232662192e-3
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.031864900100051e-5
allele num: 65966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.545359340227778e-5
allele num: 15278
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.399e0

VQSLOD
type: SiteQuality
SIO_000300: -1.321e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.582e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.92e-2

FS
type: SiteQuality
SIO_000300: 7.429e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

QD
type: SiteQuality
SIO_000300: 5.43e0

DP
type: SiteQuality
SIO_000300: 1.619261e6

GenotypeQuality
all individuals: 37772
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4553
bin: 9.75e1
variant carriers: 25

GenotypeQuality
all individuals: 981
bin: 9.25e1
variant carriers: 1

GenotypeQuality
all individuals: 31
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 622
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GenotypeQuality
all individuals: 2059
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variant carriers: 1

GenotypeQuality
all individuals: 46
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GenotypeQuality
all individuals: 6430
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variant carriers: 1

GenotypeQuality
all individuals: 669
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variant carriers: 0

GenotypeQuality
all individuals: 2488
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variant carriers: 0

GenotypeQuality
all individuals: 1453
bin: 2.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.168704156479218e-4
allele num: 6544
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 14
allele frequency: 2.122305430070036e-4
allele num: 65966
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11404
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 3.983270264887473e-4
allele num: 10042
num of homozygotes: 0

East Asian
type: Population
allele count: 11
allele frequency: 1.285347043701799e-3
allele num: 8558
num of homozygotes: 0

South Asian
type: Population
allele count: 4
allele frequency: 2.618143736091111e-4
allele num: 15278
num of homozygotes: 2

VQSLOD
type: SiteQuality
SIO_000300: -1.321e0

MQ
type: SiteQuality
SIO_000300: 4.582e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.619261e6

MQRankSum
type: SiteQuality
SIO_000300: -2.399e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.37e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.92e-2

FS
type: SiteQuality
SIO_000300: 7.429e0

QD
type: SiteQuality
SIO_000300: 5.43e0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.19e0

GenotypeQuality
all individuals: 37
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 988
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6491
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GenotypeQuality
all individuals: 2076
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variant carriers: 0

GenotypeQuality
all individuals: 181
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GenotypeQuality
all individuals: 2526
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GenotypeQuality
all individuals: 192
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GenotypeQuality
all individuals: 425
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GenotypeQuality
all individuals: 4562
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variant carriers: 1

GenotypeQuality
all individuals: 1352
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1731
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66060
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8578
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.948269001193792e-5
allele num: 10052
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15350
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6562
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 894
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

MQRankSum
type: SiteQuality
SIO_000300: 8.090000000000001e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.348e0

DP
type: SiteQuality
SIO_000300: 1.621408e6

QD
type: SiteQuality
SIO_000300: 1.443e1

MQ
type: SiteQuality
SIO_000300: 4.587e1

FS
type: SiteQuality
SIO_000300: 3.076e0

BaseQRankSum
type: SiteQuality
SIO_000300: -3.18e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.56e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.620000000000001e-1

GenotypeQuality
all individuals: 38390
bin: 6.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2098
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variant carriers: 0

GenotypeQuality
all individuals: 123
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GenotypeQuality
all individuals: 1273
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GenotypeQuality
all individuals: 6546
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GenotypeQuality
all individuals: 379
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GenotypeQuality
all individuals: 4563
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variant carriers: 3

GenotypeQuality
all individuals: 153
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GenotypeQuality
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GenotypeQuality
all individuals: 695
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GenotypeQuality
all individuals: 1761
bin: 8.25e1
variant carriers: 1

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15422
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11426
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.024345985180705e-5
allele num: 66130
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.164686699277894e-4
allele num: 8586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10074
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 5
allele frequency: 7.638252367858234e-4
allele num: 6546
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.8337e1

MQRankSum
type: SiteQuality
SIO_000300: -3.246e0

VQSLOD
type: SiteQuality
SIO_000300: -2.464e1

MQ
type: SiteQuality
SIO_000300: 4.617e1

BaseQRankSum
type: SiteQuality
SIO_000300: 5.22e-1

DP
type: SiteQuality
SIO_000300: 1.625082e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: -4.7e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -1.37e-1

QD
type: SiteQuality
SIO_000300: 2.2e0

GenotypeQuality
all individuals: 245
bin: 3.75e1
variant carriers: 10

GenotypeQuality
all individuals: 46
bin: 1.25e1
variant carriers: 6

GenotypeQuality
all individuals: 97
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GenotypeQuality
all individuals: 39
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GenotypeQuality
all individuals: 38433
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GenotypeQuality
all individuals: 312
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variant carriers: 1

GenotypeQuality
all individuals: 2561
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variant carriers: 4

GenotypeQuality
all individuals: 2095
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variant carriers: 3

GenotypeQuality
all individuals: 1015
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variant carriers: 4

GenotypeQuality
all individuals: 1770
bin: 8.25e1
variant carriers: 5

GenotypeQuality
all individuals: 696
bin: 8.75e1
variant carriers: 4

East Asian
type: Population
allele count: 30
allele frequency: 3.497318722312894e-3
allele num: 8578
num of homozygotes: 0

South Asian
type: Population
allele count: 24
allele frequency: 1.545595054095827e-3
allele num: 15528
num of homozygotes: 2

European (Finnish)
type: Population
allele count: 45
allele frequency: 6.914566687154271e-3
allele num: 6508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 118
allele frequency: 1.784903947965512e-3
allele num: 66110
num of homozygotes: 1

African
type: Population
allele count: 40
allele frequency: 3.959611958028113e-3
allele num: 10102
num of homozygotes: 1

Latino
type: Population
allele count: 4
allele frequency: 3.494670627293377e-4
allele num: 11446
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.386004514672686e-3
allele num: 886
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -2.565e0

MQ
type: SiteQuality
SIO_000300: 4.59e1

ClippingRankSum
type: SiteQuality
SIO_000300: -5.49e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.97e0

VQSLOD
type: SiteQuality
SIO_000300: -1.534e0

DP
type: SiteQuality
SIO_000300: 1.642553e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.33e-2

FS
type: SiteQuality
SIO_000300: 2.279e0

QD
type: SiteQuality
SIO_000300: 5.7e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 8.67e-1

GenotypeQuality
all individuals: 981
bin: 7.75e1
variant carriers: 95

GenotypeQuality
all individuals: 22519
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variant carriers: 21081

GenotypeQuality
all individuals: 988
bin: 7.25e1
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GenotypeQuality
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variant carriers: 107

GenotypeQuality
all individuals: 224
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GenotypeQuality
all individuals: 40
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GenotypeQuality
all individuals: 266
bin: 8.75e1
variant carriers: 74

GenotypeQuality
all individuals: 746
bin: 2.25e1
variant carriers: 30

GenotypeQuality
all individuals: 227
bin: 5.25e1
variant carriers: 72

GenotypeQuality
all individuals: 28696
bin: 6.25e1
variant carriers: 97

GenotypeQuality
all individuals: 544
bin: 8.25e1
variant carriers: 111

Other
type: Population
allele count: 209
allele frequency: 2.322222222222222e-1
allele num: 900
num of homozygotes: 30

South Asian
type: Population
allele count: 3527
allele frequency: 2.243924163379565e-1
allele num: 15718
num of homozygotes: 595

East Asian
type: Population
allele count: 2697
allele frequency: 3.141891891891892e-1
allele num: 8584
num of homozygotes: 424

European (Non-Finnish)
type: Population
allele count: 14106
allele frequency: 2.125293798589767e-1
allele num: 66372
num of homozygotes: 1543

European (Finnish)
type: Population
allele count: 2319
allele frequency: 3.529680365296803e-1
allele num: 6570
num of homozygotes: 417

African
type: Population
allele count: 853
allele frequency: 8.398975974793225e-2
allele num: 10156
num of homozygotes: 41

Latino
type: Population
allele count: 1560
allele frequency: 1.358648319108169e-1
allele num: 11482
num of homozygotes: 115

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.03e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.526e0

FS
type: SiteQuality
SIO_000300: 6.16e-1

VQSLOD
type: SiteQuality
SIO_000300: 1.59e0

QD
type: SiteQuality
SIO_000300: 1.543e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.11e-2

MQ
type: SiteQuality
SIO_000300: 4.767e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.62e-1

MQRankSum
type: SiteQuality
SIO_000300: -2.13e-1

DP
type: SiteQuality
SIO_000300: 2.191631e6

GenotypeQuality
all individuals: 43040
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1768
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GenotypeQuality
all individuals: 862
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GenotypeQuality
all individuals: 122
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GenotypeQuality
all individuals: 199
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GenotypeQuality
all individuals: 7149
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GenotypeQuality
all individuals: 247
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variant carriers: 0

GenotypeQuality
all individuals: 3006
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 796
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 181
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.36213258684311e-5
allele num: 15718
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8628
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10154
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.504845602841149e-5
allele num: 66452
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6594
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.38e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.1e-2

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.4e-3

FS
type: SiteQuality
SIO_000300: 2.816e0

VQSLOD
type: SiteQuality
SIO_000300: -7.779e-1

QD
type: SiteQuality
SIO_000300: 1.262e1

MQRankSum
type: SiteQuality
SIO_000300: 1.06e0

MQ
type: SiteQuality
SIO_000300: 4.868e1

BaseQRankSum
type: SiteQuality
SIO_000300: 9.87e-1

DP
type: SiteQuality
SIO_000300: 1.638477e6

GenotypeQuality
all individuals: 1754
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 100
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 50
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 7.5e0
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GenotypeQuality
all individuals: 11
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2995
bin: 9.75e1
variant carriers: 2

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1818
bin: 7.25e1
variant carriers: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.157675387821255e-4
allele num: 8638
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10200
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11508
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502674761074713e-5
allele num: 66548
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15860
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 6.919999999999999e-1

MQ
type: SiteQuality
SIO_000300: 4.706e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 9.299999999999999e-3

DP
type: SiteQuality
SIO_000300: 1.644885e6

BaseQRankSum
type: SiteQuality
SIO_000300: 4.97e0

QD
type: SiteQuality
SIO_000300: 8.699999999999999e0

MQRankSum
type: SiteQuality
SIO_000300: -1.245e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.17e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.667e0

ClippingRankSum
type: SiteQuality
SIO_000300: 9.8e-2

GenotypeQuality
all individuals: 7232
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 0
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 6.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2991
bin: 9.75e1
variant carriers: 1

GenotypeQuality
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bin: 5.25e1
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GenotypeQuality
all individuals: 307
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 76
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variant carriers: 0

GenotypeQuality
all individuals: 1755
bin: 7.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502223290469895e-5
allele num: 66568
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15926
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.296e0

QD
type: SiteQuality
SIO_000300: 1.104e1

MQ
type: SiteQuality
SIO_000300: 5.071e1

BaseQRankSum
type: SiteQuality
SIO_000300: 4.82e0

MQRankSum
type: SiteQuality
SIO_000300: 1.17e0

DP
type: SiteQuality
SIO_000300: 1.648356e6

ClippingRankSum
type: SiteQuality
SIO_000300: -1.16e-1

FS
type: SiteQuality
SIO_000300: 9.95e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-2

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.48e-1

GenotypeQuality
all individuals: 44405
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 851
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 561
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1759
bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 22
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variant carriers: 0

GenotypeQuality
all individuals: 2
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variant carriers: 0

GenotypeQuality
all individuals: 43
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variant carriers: 0

GenotypeQuality
all individuals: 27
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 376
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11522
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8644
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15936
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502087902184036e-5
allele num: 66574
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.648778e6

MQRankSum
type: SiteQuality
SIO_000300: 1.07e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -3.044e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.154e1

VQSLOD
type: SiteQuality
SIO_000300: -2.954e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.67e0

MQ
type: SiteQuality
SIO_000300: 4.617e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.21e0

GenotypeQuality
all individuals: 55
bin: 5.25e1
variant carriers: 4

GenotypeQuality
all individuals: 55
bin: 5.75e1
variant carriers: 5

GenotypeQuality
all individuals: 103
bin: 2.5e0
variant carriers: 4

GenotypeQuality
all individuals: 39
bin: 1.75e1
variant carriers: 9

GenotypeQuality
all individuals: 43888
bin: 6.25e1
variant carriers: 8

GenotypeQuality
all individuals: 256
bin: 8.75e1
variant carriers: 6

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 11

GenotypeQuality
all individuals: 71
bin: 3.75e1
variant carriers: 12

GenotypeQuality
all individuals: 1733
bin: 7.25e1
variant carriers: 4

GenotypeQuality
all individuals: 64
bin: 4.25e1
variant carriers: 8

GenotypeQuality
all individuals: 1677
bin: 7.75e1
variant carriers: 12

European (Finnish)
type: Population
allele count: 65
allele frequency: 9.881422924901186e-3
allele num: 6578
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 507
allele frequency: 7.627042151818756e-3
allele num: 66474
num of homozygotes: 4

African
type: Population
allele count: 125
allele frequency: 1.225970969007454e-2
allele num: 10196
num of homozygotes: 1

Other
type: Population
allele count: 12
allele frequency: 1.33630289532294e-2
allele num: 898
num of homozygotes: 0

Latino
type: Population
allele count: 59
allele frequency: 5.122417086299705e-3
allele num: 11518
num of homozygotes: 0

East Asian
type: Population
allele count: 172
allele frequency: 1.991201667052558e-2
allele num: 8638
num of homozygotes: 0

South Asian
type: Population
allele count: 475
allele frequency: 3.005948614099481e-2
allele num: 15802
num of homozygotes: 31

ClippingRankSum
type: SiteQuality
SIO_000300: -1.012e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.06e0

FS
type: SiteQuality
SIO_000300: 4.79e0

MQ
type: SiteQuality
SIO_000300: 4.313e1

MQRankSum
type: SiteQuality
SIO_000300: -1.403e0

VQSLOD
type: SiteQuality
SIO_000300: -9.829e-1

DP
type: SiteQuality
SIO_000300: 1.680561e6

QD
type: SiteQuality
SIO_000300: 7.29e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.72e-2

BaseQRankSum
type: SiteQuality
SIO_000300: 2.29e0

GenotypeQuality
all individuals: 38
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 254
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 44853
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 70
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 33
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15914
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66556
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

East Asian
type: Population
allele count: 3
allele frequency: 3.472222222222222e-4
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

QD
type: SiteQuality
SIO_000300: 1.282e1

FS
type: SiteQuality
SIO_000300: 1.863e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

VQSLOD
type: SiteQuality
SIO_000300: -1.335e0

MQ
type: SiteQuality
SIO_000300: 4.791e1

DP
type: SiteQuality
SIO_000300: 1.637117e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

GenotypeQuality
all individuals: 1726
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 781
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 24
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 663
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1790
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 57
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7285
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 254
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variant carriers: 0

GenotypeQuality
all individuals: 2620
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 311
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variant carriers: 0

GenotypeQuality
all individuals: 58
bin: 5.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10230
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.502494140272853e-5
allele num: 66556
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11518
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15914
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

ClippingRankSum
type: SiteQuality
SIO_000300: -6.4e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.53e0

MQRankSum
type: SiteQuality
SIO_000300: 5.1e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.02e-1

DP
type: SiteQuality
SIO_000300: 1.637117e6

VQSLOD
type: SiteQuality
SIO_000300: -1.335e0

FS
type: SiteQuality
SIO_000300: 1.863e0

MQ
type: SiteQuality
SIO_000300: 4.791e1

QD
type: SiteQuality
SIO_000300: 1.282e1

GenotypeQuality
all individuals: 68
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1787
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 777
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 52
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 2616
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1717
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 252
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 38
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44657
bin: 6.25e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15892
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10204
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.635063e6

FS
type: SiteQuality
SIO_000300: 2.2055e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.671e0

MQRankSum
type: SiteQuality
SIO_000300: 4.11e0

MQ
type: SiteQuality
SIO_000300: 4.243e1

VQSLOD
type: SiteQuality
SIO_000300: -9.023e0

BaseQRankSum
type: SiteQuality
SIO_000300: -6.27e-1

QD
type: SiteQuality
SIO_000300: 1.266e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.32e0

GenotypeQuality
all individuals: 4
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7251
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 77
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variant carriers: 0

GenotypeQuality
all individuals: 88
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GenotypeQuality
all individuals: 2616
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1783
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GenotypeQuality
all individuals: 251
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variant carriers: 0

GenotypeQuality
all individuals: 44
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variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 773
bin: 8.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.503216884132043e-5
allele num: 66524
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 9.801999607920016e-5
allele num: 10202
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15894
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6600
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11514
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.146e1

DP
type: SiteQuality
SIO_000300: 1.6355e6

VQSLOD
type: SiteQuality
SIO_000300: -1.71e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -1.662e0

MQRankSum
type: SiteQuality
SIO_000300: 7.31e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.63e-1

FS
type: SiteQuality
SIO_000300: 4.11e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.67e-1

MQ
type: SiteQuality
SIO_000300: 4.623e1

GenotypeQuality
all individuals: 44461
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 108
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 4
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 768
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 39
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 312
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2612
bin: 9.75e1
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GenotypeQuality
all individuals: 7227
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 30
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 8.75e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10150
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 6.302785831337451e-5
allele num: 15866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6598
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 66468
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11512
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.588e1

VQSLOD
type: SiteQuality
SIO_000300: -1.839e0

FS
type: SiteQuality
SIO_000300: 1.577e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.32e-1

QD
type: SiteQuality
SIO_000300: 1.268e1

DP
type: SiteQuality
SIO_000300: 1.633057e6

MQRankSum
type: SiteQuality
SIO_000300: 1.08e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.21e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.84e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.0e-4

GenotypeQuality
all individuals: 92
bin: 2.75e1
variant carriers: 2

GenotypeQuality
all individuals: 1600
bin: 7.25e1
variant carriers: 3

GenotypeQuality
all individuals: 9
bin: 1.25e1
variant carriers: 2

GenotypeQuality
all individuals: 98
bin: 3.25e1
variant carriers: 5

GenotypeQuality
all individuals: 79
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 566
bin: 8.25e1
variant carriers: 4

GenotypeQuality
all individuals: 43116
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 35
bin: 7.5e0
variant carriers: 2

GenotypeQuality
all individuals: 195
bin: 9.25e1
variant carriers: 6

GenotypeQuality
all individuals: 1452
bin: 7.75e1
variant carriers: 2

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 1

European (Finnish)
type: Population
allele count: 216
allele frequency: 3.274711946634324e-2
allele num: 6596
num of homozygotes: 3

East Asian
type: Population
allele count: 1
allele frequency: 1.157407407407407e-4
allele num: 8640
num of homozygotes: 0

African
type: Population
allele count: 86
allele frequency: 8.47123719464145e-3
allele num: 10152
num of homozygotes: 2

South Asian
type: Population
allele count: 185
allele frequency: 1.166162380231972e-2
allele num: 15864
num of homozygotes: 12

Latino
type: Population
allele count: 1073
allele frequency: 9.317471344216742e-2
allele num: 11516
num of homozygotes: 50

Other
type: Population
allele count: 33
allele frequency: 3.666666666666667e-2
allele num: 900
num of homozygotes: 1

European (Non-Finnish)
type: Population
allele count: 2190
allele frequency: 3.294917702283875e-2
allele num: 66466
num of homozygotes: 18

MQRankSum
type: SiteQuality
SIO_000300: 5.04e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.966e0

MQ
type: SiteQuality
SIO_000300: 4.446e1

QD
type: SiteQuality
SIO_000300: 1.098e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.78e-1

FS
type: SiteQuality
SIO_000300: 1.136e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.55e-1

VQSLOD
type: SiteQuality
SIO_000300: -5.504e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.41e-2

DP
type: SiteQuality
SIO_000300: 1.740761e6

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1007
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 43
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 101
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 203
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45697
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1738
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 159
bin: 8.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 900
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10136
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 4.515080368430558e-5
allele num: 66444
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8640
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11510
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6596
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.66e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.127e0

MQRankSum
type: SiteQuality
SIO_000300: 8.39e-1

MQ
type: SiteQuality
SIO_000300: 4.591e1

QD
type: SiteQuality
SIO_000300: 4.52e0

FS
type: SiteQuality
SIO_000300: 2.577e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.44e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.39e0

DP
type: SiteQuality
SIO_000300: 1.612699e6

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 593
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 85
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 17
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 54
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1547
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 68
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1762
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7284
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 99
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 45418
bin: 6.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.50793172085168e-5
allele num: 66316
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11494
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10068
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15774
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6592
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -1.847e0

MQ
type: SiteQuality
SIO_000300: 4.55e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: -1.021e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.1e-2

DP
type: SiteQuality
SIO_000300: 1.607251e6

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.882e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.8e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.28e-1

GenotypeQuality
all individuals: 148
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 40
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1476
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 6
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2009
bin: 9.75e1
variant carriers: 361

GenotypeQuality
all individuals: 1528
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 72
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45008
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20
bin: 1.75e1
variant carriers: 1

East Asian
type: Population
allele count: 3
allele frequency: 3.475440222428174e-4
allele num: 8632
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

Other
type: Population
allele count: 3
allele frequency: 3.348214285714286e-3
allele num: 896
num of homozygotes: 0

African
type: Population
allele count: 8
allele frequency: 7.968127490039841e-4
allele num: 10040
num of homozygotes: 0

Latino
type: Population
allele count: 348
allele frequency: 3.032415475775532e-2
allele num: 11476
num of homozygotes: 4

European (Non-Finnish)
type: Population
allele count: 4
allele frequency: 6.037553583288052e-5
allele num: 66252
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.612619e6

BaseQRankSum
type: SiteQuality
SIO_000300: 3.21e0

VQSLOD
type: SiteQuality
SIO_000300: -7.284e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.17e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 4.492e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.58e-2

QD
type: SiteQuality
SIO_000300: 1.239e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.820000000000001e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.13e-1

GenotypeQuality
all individuals: 68
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 109
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 18
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 7255
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 146
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1532
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 88
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1655
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 45164
bin: 6.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6590
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.020326799359691e-5
allele num: 66218
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11468
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15712
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10034
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.60101e6

VQSLOD
type: SiteQuality
SIO_000300: -1.929e0

FS
type: SiteQuality
SIO_000300: 1.147e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.8e-3

MQRankSum
type: SiteQuality
SIO_000300: 6.34e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -7.16e-1

MQ
type: SiteQuality
SIO_000300: 4.432e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.58e-1

QD
type: SiteQuality
SIO_000300: 1.184e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.39e-1

GenotypeQuality
all individuals: 106
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 171
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 45016
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 91
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1526
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1654
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 52
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7241
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.022061045633122e-5
allele num: 66180
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15684
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6586
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10016
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11456
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.762e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.812e0

FS
type: SiteQuality
SIO_000300: 8.835000000000001e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.82e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.24e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.19e-1

DP
type: SiteQuality
SIO_000300: 1.599664e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 4.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -3.346e0

QD
type: SiteQuality
SIO_000300: 1.042e1

GenotypeQuality
all individuals: 186
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 71
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 44708
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 180
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 188
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 145
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 563
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1722
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1663
bin: 9.75e1
variant carriers: 18

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8634
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 7
allele frequency: 1.058681185722928e-4
allele num: 66120
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11448
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9980
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15654
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 890
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 11
allele frequency: 1.670209535378075e-3
allele num: 6586
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.355e1

QD
type: SiteQuality
SIO_000300: 1.118e1

MQRankSum
type: SiteQuality
SIO_000300: 9.02e-1

FS
type: SiteQuality
SIO_000300: 1.104e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-3

VQSLOD
type: SiteQuality
SIO_000300: 3.22e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.24e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.68e-1

DP
type: SiteQuality
SIO_000300: 1.597906e6

ClippingRankSum
type: SiteQuality
SIO_000300: -4.99e-1

GenotypeQuality
all individuals: 208
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 119
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1971
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 44770
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 26
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1640
bin: 9.75e1
variant carriers: 2

GenotypeQuality
all individuals: 90
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 193
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7154
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 142
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1707
bin: 7.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9962
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15622
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 892
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6580
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.028375882014476e-5
allele num: 66042
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11438
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8620
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 4.303e1

VQSLOD
type: SiteQuality
SIO_000300: -2.395e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.106e0

FS
type: SiteQuality
SIO_000300: 2.533e0

DP
type: SiteQuality
SIO_000300: 1.594027e6

MQRankSum
type: SiteQuality
SIO_000300: 2.4e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -2.43e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-3

QD
type: SiteQuality
SIO_000300: 7.99e0

ClippingRankSum
type: SiteQuality
SIO_000300: -4.5e-1

GenotypeQuality
all individuals: 1670
bin: 9.75e1
variant carriers: 173

GenotypeQuality
all individuals: 1459
bin: 7.75e1
variant carriers: 3

GenotypeQuality
all individuals: 138
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 219
bin: 2.75e1
variant carriers: 1

GenotypeQuality
all individuals: 72
bin: 4.25e1
variant carriers: 5

GenotypeQuality
all individuals: 44398
bin: 6.25e1
variant carriers: 3

GenotypeQuality
all individuals: 533
bin: 8.25e1
variant carriers: 3

GenotypeQuality
all individuals: 1689
bin: 7.25e1
variant carriers: 5

GenotypeQuality
all individuals: 7086
bin: 6.75e1
variant carriers: 3

GenotypeQuality
all individuals: 203
bin: 5.75e1
variant carriers: 7

GenotypeQuality
all individuals: 169
bin: 9.25e1
variant carriers: 0

Other
type: Population
allele count: 2
allele frequency: 2.262443438914027e-3
allele num: 884
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 6
allele frequency: 9.168704156479218e-4
allele num: 6544
num of homozygotes: 0

African
type: Population
allele count: 18
allele frequency: 1.810500905250453e-3
allele num: 9942
num of homozygotes: 0

Latino
type: Population
allele count: 32
allele frequency: 2.80357455756089e-3
allele num: 11414
num of homozygotes: 0

South Asian
type: Population
allele count: 68
allele frequency: 4.372990353697749e-3
allele num: 15550
num of homozygotes: 1

East Asian
type: Population
allele count: 8
allele frequency: 9.295840111550081e-4
allele num: 8606
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 97
allele frequency: 1.471168137834804e-3
allele num: 65934
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: -5.9e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.56e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.9e-3

FS
type: SiteQuality
SIO_000300: 5.941e0

VQSLOD
type: SiteQuality
SIO_000300: -2.084e0

QD
type: SiteQuality
SIO_000300: 4.99e0

MQ
type: SiteQuality
SIO_000300: 4.137e1

MQRankSum
type: SiteQuality
SIO_000300: -6.879999999999999e-1

DP
type: SiteQuality
SIO_000300: 1.592543e6

ClippingRankSum
type: SiteQuality
SIO_000300: 5.29e-1

GenotypeQuality
all individuals: 223
bin: 3.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.25e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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bin: 7.5e0
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GenotypeQuality
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bin: 9.25e1
variant carriers: 0

GenotypeQuality
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bin: 2.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 6.75e1
variant carriers: 0

GenotypeQuality
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bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 44832
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 89
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6574
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.515932450050026e-5
allele num: 65966
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8600
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9942
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11412
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15566
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 886
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.501e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 9.25e-1

FS
type: SiteQuality
SIO_000300: 1.779e0

VQSLOD
type: SiteQuality
SIO_000300: -9.365e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.49e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.1e-3

ClippingRankSum
type: SiteQuality
SIO_000300: 6.74e-1

QD
type: SiteQuality
SIO_000300: 3.404e1

DP
type: SiteQuality
SIO_000300: 1.584477e6

MQ
type: SiteQuality
SIO_000300: 4.536e1

GenotypeQuality
all individuals: 77
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 280
bin: 5.25e1
variant carriers: 0

GenotypeQuality
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bin: 4.25e1
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GenotypeQuality
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GenotypeQuality
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bin: 8.25e1
variant carriers: 0

GenotypeQuality
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bin: 7.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 2

GenotypeQuality
all individuals: 130
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GenotypeQuality
all individuals: 1664
bin: 7.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6556
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15338
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9724
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8524
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.059226627508566e-5
allele num: 65376
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11314
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 884
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.1e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.0e-4

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.97e-1

FS
type: SiteQuality
SIO_000300: 1.1838e1

QD
type: SiteQuality
SIO_000300: 1.774e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.54e0

VQSLOD
type: SiteQuality
SIO_000300: 4.43e-1

MQ
type: SiteQuality
SIO_000300: 4.113e1

DP
type: SiteQuality
SIO_000300: 1.562275e6

ClippingRankSum
type: SiteQuality
SIO_000300: 1.08e-1

GenotypeQuality
all individuals: 119
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1402
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 437
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variant carriers: 0

GenotypeQuality
all individuals: 1505
bin: 9.75e1
variant carriers: 1

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 65052
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 874
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8494
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11262
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 1.037990450487856e-4
allele num: 9634
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 15222
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6540
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: 8.110000000000001e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.7e-3

MQ
type: SiteQuality
SIO_000300: 3.925e1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.37e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.083e0

DP
type: SiteQuality
SIO_000300: 1.55048e6

QD
type: SiteQuality
SIO_000300: 7.36e0

BaseQRankSum
type: SiteQuality
SIO_000300: -2.028e0

GenotypeQuality
all individuals: 1351
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1500
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variant carriers: 1

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 4968
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
all individuals: 30
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variant carriers: 1

GenotypeQuality
all individuals: 6788
bin: 6.75e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 64410
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.174603174603175e-4
allele num: 9450
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6484
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11110
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14974
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8382
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 866
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.55e-1

QD
type: SiteQuality
SIO_000300: 1.26e0

DP
type: SiteQuality
SIO_000300: 1.526959e6

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.5e-3

FS
type: SiteQuality
SIO_000300: 4.4127e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.32e-1

MQRankSum
type: SiteQuality
SIO_000300: -9.31e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.138e0

MQ
type: SiteQuality
SIO_000300: 3.809e1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.91e-1

GenotypeQuality
all individuals: 95
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8059
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 1498
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variant carriers: 1

GenotypeQuality
all individuals: 339
bin: 4.25e1
variant carriers: 0

Latino
type: Population
allele count: 1
allele frequency: 9.333582228859437e-5
allele num: 10714
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9070
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8132
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6356
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14486
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 62432
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 850
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.409e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.486e1

QD
type: SiteQuality
SIO_000300: 7.06e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.0e-4

BaseQRankSum
type: SiteQuality
SIO_000300: -3.8e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 5.82e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -9.15e-1

MQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

DP
type: SiteQuality
SIO_000300: 1.457446e6

GenotypeQuality
all individuals: 67
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 394
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variant carriers: 0

GenotypeQuality
all individuals: 1537
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variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
all individuals: 474
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GenotypeQuality
all individuals: 1499
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variant carriers: 2

GenotypeQuality
all individuals: 35434
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GenotypeQuality
all individuals: 549
bin: 4.75e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 844
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 9006
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.225078208146548e-5
allele num: 62014
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10652
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14416
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6316
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8074
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.636e1

VQSLOD
type: SiteQuality
SIO_000300: -3.44e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.39e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.0e-4

DP
type: SiteQuality
SIO_000300: 1.442049e6

BaseQRankSum
type: SiteQuality
SIO_000300: 2.21e0

FS
type: SiteQuality
SIO_000300: 4.48e0

ClippingRankSum
type: SiteQuality
SIO_000300: 3.7e-2

MQRankSum
type: SiteQuality
SIO_000300: 6.1e-1

QD
type: SiteQuality
SIO_000300: 9.449999999999999e0

GenotypeQuality
all individuals: 1475
bin: 4.75e1
variant carriers: 0

GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 931
bin: 7.25e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14004
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.675940202453577e-5
allele num: 59668
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7810
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 1.359507e6

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

QD
type: SiteQuality
SIO_000300: 9.9e0

FS
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

MQ
type: SiteQuality
SIO_000300: 3.868e1

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

GenotypeQuality
all individuals: 1327
bin: 5.75e1
variant carriers: 0

GenotypeQuality
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bin: 2.75e1
variant carriers: 0

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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GenotypeQuality
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variant carriers: 0

GenotypeQuality
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variant carriers: 1

GenotypeQuality
all individuals: 306
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.164415463437354e-4
allele num: 8588
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7810
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 59668
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10162
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6156
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 14004
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 820
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.868e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.45e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 2.9e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 2.38e-1

VQSLOD
type: SiteQuality
SIO_000300: 3.97e0

MQRankSum
type: SiteQuality
SIO_000300: 1.27e0

QD
type: SiteQuality
SIO_000300: 9.9e0

DP
type: SiteQuality
SIO_000300: 1.359507e6

ClippingRankSum
type: SiteQuality
SIO_000300: 6.2e-2

GenotypeQuality
all individuals: 497
bin: 7.5e0
variant carriers: 0

GenotypeQuality
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bin: 9.25e1
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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variant carriers: 7

GenotypeQuality
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GenotypeQuality
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GenotypeQuality
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GenotypeQuality
all individuals: 1864
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variant carriers: 1

GenotypeQuality
all individuals: 722
bin: 7.75e1
variant carriers: 0

Latino
type: Population
allele count: 3
allele frequency: 3.012048192771085e-4
allele num: 9960
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 808
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.019645163483108e-4
allele num: 58844
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7694
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6084
num of homozygotes: 0

African
type: Population
allele count: 4
allele frequency: 4.722550177095632e-4
allele num: 8470
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.445295562942622e-4
allele num: 13838
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 5.51e-1

DP
type: SiteQuality
SIO_000300: 1.319979e6

FS
type: SiteQuality
SIO_000300: 2.2908e1

VQSLOD
type: SiteQuality
SIO_000300: -7.764e0

MQ
type: SiteQuality
SIO_000300: 3.384e1

QD
type: SiteQuality
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InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

MQRankSum
type: SiteQuality
SIO_000300: -2.294e0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -1.211e0

GenotypeQuality
all individuals: 713
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1634
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 137
bin: 9.25e1
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GenotypeQuality
all individuals: 531
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GenotypeQuality
all individuals: 299
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GenotypeQuality
all individuals: 1795
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GenotypeQuality
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GenotypeQuality
all individuals: 891
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GenotypeQuality
all individuals: 1917
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variant carriers: 0

GenotypeQuality
all individuals: 28015
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GenotypeQuality
all individuals: 1000
bin: 4.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8428
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.012145748987854e-4
allele num: 9880
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 802
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.311647429171039e-4
allele num: 7624
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6056
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13802
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 6
allele frequency: 1.026483268322726e-4
allele num: 58452
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -9.96e-1

MQ
type: SiteQuality
SIO_000300: 3.435e1

BaseQRankSum
type: SiteQuality
SIO_000300: -1.508e0

DP
type: SiteQuality
SIO_000300: 1.305106e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -2.9e-3

FS
type: SiteQuality
SIO_000300: 3.643e0

MQRankSum
type: SiteQuality
SIO_000300: 1.74e-1

VQSLOD
type: SiteQuality
SIO_000300: -3.552e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 6.01e-1

QD
type: SiteQuality
SIO_000300: 8.800000000000001e0

GenotypeQuality
all individuals: 1393
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 457
bin: 7.75e1
variant carriers: 1

GenotypeQuality
all individuals: 563
bin: 1.75e1
variant carriers: 1

GenotypeQuality
all individuals: 1729
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1246
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 7.25e1
variant carriers: 2

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1576
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2771
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 222
bin: 8.25e1
variant carriers: 2

African
type: Population
allele count: 66
allele frequency: 8.741721854304637e-3
allele num: 7550
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6950
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52420
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.159285879897983e-4
allele num: 8626
num of homozygotes: 0

South Asian
type: Population
allele count: 2
allele frequency: 1.545117428924598e-4
allele num: 12944
num of homozygotes: 1

QD
type: SiteQuality
SIO_000300: 1.029e1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: 1.04e-1

MQRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 1.161253e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.8e-3

BaseQRankSum
type: SiteQuality
SIO_000300: -3.061e0

VQSLOD
type: SiteQuality
SIO_000300: -3.557e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.1e-2

MQ
type: SiteQuality
SIO_000300: 3.084e1

GenotypeQuality
all individuals: 1401
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2006
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2741
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 23981
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variant carriers: 0

GenotypeQuality
all individuals: 250
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 123
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 510
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 217
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 448
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 591
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1469
bin: 9.75e1
variant carriers: 1

Latino
type: Population
allele count: 1
allele frequency: 1.161710037174721e-4
allele num: 8608
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7514
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12944
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5726
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 738
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6942
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 52390
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.866e0

MQ
type: SiteQuality
SIO_000300: 3.126e1

DP
type: SiteQuality
SIO_000300: 1.160759e6

QD
type: SiteQuality
SIO_000300: 1.086e1

BaseQRankSum
type: SiteQuality
SIO_000300: 1.04e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.9e-3

VQSLOD
type: SiteQuality
SIO_000300: -5.412e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.57e0

MQRankSum
type: SiteQuality
SIO_000300: -1.866e0

FS
type: SiteQuality
SIO_000300: 1.4771e1

GenotypeQuality
all individuals: 1895
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2739
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 218
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 358
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 753
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 996
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 578
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1847
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1111
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 449
bin: 7.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12898
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 1.91168036704263e-5
allele num: 52310
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6928
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5738
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8582
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 736
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7520
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: 2.11e-1

FS
type: SiteQuality
SIO_000300: 1.582e0

MQ
type: SiteQuality
SIO_000300: 3.185e1

VQSLOD
type: SiteQuality
SIO_000300: -4.005e0

QD
type: SiteQuality
SIO_000300: 1.149e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.615e0

ClippingRankSum
type: SiteQuality
SIO_000300: 4.65e-1

DP
type: SiteQuality
SIO_000300: 1.161282e6

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.4e-3

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.75e-1

GenotypeQuality
all individuals: 539
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 205
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1902
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 489
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 889
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 122
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1726
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 23282
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2361
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 9.75e1
variant carriers: 1

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12210
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 1.258811681772407e-4
allele num: 7944
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7180
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5556
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 49422
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 686
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6646
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.03e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 1.03e-1

DP
type: SiteQuality
SIO_000300: 1.101688e6

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -5.4e-3

MQ
type: SiteQuality
SIO_000300: 3.069e1

MQRankSum
type: SiteQuality
SIO_000300: 8.51e-1

QD
type: SiteQuality
SIO_000300: 7.77e0

VQSLOD
type: SiteQuality
SIO_000300: -4.481e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.453e0

GenotypeQuality
all individuals: 116
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 469
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 198
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1714
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 556
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1466
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 2232
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 373
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1802
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 21575
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6998
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7632
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6534
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5434
num of homozygotes: 0

South Asian
type: Population
allele count: 1
allele frequency: 8.445945945945946e-5
allele num: 11840
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 670
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 47936
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.997e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.0e-3

QD
type: SiteQuality
SIO_000300: 1.565e1

VQSLOD
type: SiteQuality
SIO_000300: -4.8e0

MQRankSum
type: SiteQuality
SIO_000300: 1.67e0

FS
type: SiteQuality
SIO_000300: 0.0e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.64e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.54e0

ClippingRankSum
type: SiteQuality
SIO_000300: -1.082e0

DP
type: SiteQuality
SIO_000300: 1.067571e6

GenotypeQuality
all individuals: 239
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 133
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 24332
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 717
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variant carriers: 0

GenotypeQuality
all individuals: 423
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variant carriers: 0

GenotypeQuality
all individuals: 433
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variant carriers: 0

GenotypeQuality
all individuals: 482
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variant carriers: 0

GenotypeQuality
all individuals: 1813
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 552
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variant carriers: 0

GenotypeQuality
all individuals: 190
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variant carriers: 0

GenotypeQuality
all individuals: 21231
bin: 6.25e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6482
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6956
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11754
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5416
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.101546738399462e-5
allele num: 47584
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7574
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 662
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 2.965e1

DP
type: SiteQuality
SIO_000300: 1.061405e6

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.9e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.93e-1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.09e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.353e0

VQSLOD
type: SiteQuality
SIO_000300: -3.806e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.519e1

GenotypeQuality
all individuals: 1819
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 497
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 445
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 25536
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 20482
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 233
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variant carriers: 0

GenotypeQuality
all individuals: 419
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variant carriers: 0

GenotypeQuality
all individuals: 352
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2157
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 120
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 361
bin: 5.75e1
variant carriers: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6404
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11540
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.14041095890411e-5
allele num: 46720
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7376
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6866
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5352
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 658
num of homozygotes: 0

FS
type: SiteQuality
SIO_000300: 0.0e0

DP
type: SiteQuality
SIO_000300: 1.041579e6

BaseQRankSum
type: SiteQuality
SIO_000300: -3.2e-1

MQ
type: SiteQuality
SIO_000300: 3.013e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.04e-1

VQSLOD
type: SiteQuality
SIO_000300: -4.252e0

MQRankSum
type: SiteQuality
SIO_000300: -9.03e-1

QD
type: SiteQuality
SIO_000300: 1.671e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.25e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -6.3e-3

GenotypeQuality
all individuals: 1865
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 2705
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 331
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2094
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 107
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 235
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 402
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1467
bin: 9.75e1
variant carriers: 5

GenotypeQuality
all individuals: 79
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1045
bin: 3.75e1
variant carriers: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7302
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 11406
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 46086
num of homozygotes: 0

African
type: Population
allele count: 5
allele frequency: 7.350779182593355e-4
allele num: 6802
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 650
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6364
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5306
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: -7.5e-3

VQSLOD
type: SiteQuality
SIO_000300: -4.117e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.56e-1

FS
type: SiteQuality
SIO_000300: 2.669e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 4.15e-1

MQ
type: SiteQuality
SIO_000300: 3.13e1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.13e0

QD
type: SiteQuality
SIO_000300: 1.3e1

DP
type: SiteQuality
SIO_000300: 1.024238e6

MQRankSum
type: SiteQuality
SIO_000300: 2.54e-1

GenotypeQuality
all individuals: 235
bin: 4.75e1
variant carriers: 10

GenotypeQuality
all individuals: 214
bin: 7.75e1
variant carriers: 16

GenotypeQuality
all individuals: 2025
bin: 2.75e1
variant carriers: 4

GenotypeQuality
all individuals: 125
bin: 9.25e1
variant carriers: 16

GenotypeQuality
all individuals: 1971
bin: 9.75e1
variant carriers: 571

GenotypeQuality
all individuals: 347
bin: 5.75e1
variant carriers: 17

GenotypeQuality
all individuals: 33308
bin: 2.25e1
variant carriers: 8

GenotypeQuality
all individuals: 137
bin: 8.25e1
variant carriers: 15

GenotypeQuality
all individuals: 1151
bin: 6.75e1
variant carriers: 19

GenotypeQuality
all individuals: 10392
bin: 6.25e1
variant carriers: 11

GenotypeQuality
all individuals: 82
bin: 8.75e1
variant carriers: 12

African
type: Population
allele count: 154
allele frequency: 2.603990530943524e-2
allele num: 5914
num of homozygotes: 1

Other
type: Population
allele count: 4
allele frequency: 7.2992700729927e-3
allele num: 548
num of homozygotes: 0

South Asian
type: Population
allele count: 52
allele frequency: 5.609492988133765e-3
allele num: 9270
num of homozygotes: 0

Latino
type: Population
allele count: 271
allele frequency: 4.58079783637593e-2
allele num: 5916
num of homozygotes: 3

European (Non-Finnish)
type: Population
allele count: 135
allele frequency: 3.490356274884948e-3
allele num: 38678
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 33
allele frequency: 6.918238993710692e-3
allele num: 4770
num of homozygotes: 0

East Asian
type: Population
allele count: 24
allele frequency: 4.341534008683068e-3
allele num: 5528
num of homozygotes: 0

MQRankSum
type: SiteQuality
SIO_000300: -5.73e-1

DP
type: SiteQuality
SIO_000300: 8.49453e5

QD
type: SiteQuality
SIO_000300: 9.01e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.27e-2

VQSLOD
type: SiteQuality
SIO_000300: -3.504e0

MQ
type: SiteQuality
SIO_000300: 3.028e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.5e-2

BaseQRankSum
type: SiteQuality
SIO_000300: -2.321e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.8e-1

FS
type: SiteQuality
SIO_000300: 1.046e0

GenotypeQuality
all individuals: 174
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 177
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 588
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 964
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 174
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 8109
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 349
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1395
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 7177
bin: 7.5e0
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GenotypeQuality
all individuals: 126
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 189
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 9.25e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4594
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5300
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5612
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 532
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 8716
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 5274
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 2.734631371691096e-5
allele num: 36568
num of homozygotes: 0

DP
type: SiteQuality
SIO_000300: 7.93905e5

BaseQRankSum
type: SiteQuality
SIO_000300: 2.71e-1

QD
type: SiteQuality
SIO_000300: 1.352e1

MQRankSum
type: SiteQuality
SIO_000300: 9.51e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -1.64e-2

MQ
type: SiteQuality
SIO_000300: 3.142e1

VQSLOD
type: SiteQuality
SIO_000300: 2.92e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.17e-1

FS
type: SiteQuality
SIO_000300: 2.431e0

ClippingRankSum
type: SiteQuality
SIO_000300: 2.71e-1

GenotypeQuality
all individuals: 1205
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 13286
bin: 7.5e0
variant carriers: 1

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
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bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 575
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 151
bin: 7.75e1
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GenotypeQuality
all individuals: 115
bin: 8.25e1
variant carriers: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4572
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 2.267573696145125e-4
allele num: 4410
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.360440889844748e-5
allele num: 29758
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3952
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3946
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.99e-2

QD
type: SiteQuality
SIO_000300: 1.178e1

VQSLOD
type: SiteQuality
SIO_000300: -2.436e0

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

DP
type: SiteQuality
SIO_000300: 6.56397e5

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

MQ
type: SiteQuality
SIO_000300: 3.04e1

GenotypeQuality
all individuals: 13286
bin: 7.5e0
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3208
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 80
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1420
bin: 9.75e1
variant carriers: 1

GenotypeQuality
all individuals: 151
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variant carriers: 0

GenotypeQuality
all individuals: 60
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6870
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4410
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4572
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3952
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 3.360440889844748e-5
allele num: 29758
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -2.436e0

DP
type: SiteQuality
SIO_000300: 6.56397e5

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.99e-2

QD
type: SiteQuality
SIO_000300: 1.178e1

FS
type: SiteQuality
SIO_000300: 0.0e0

MQ
type: SiteQuality
SIO_000300: 3.04e1

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

GenotypeQuality
all individuals: 136
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 379
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 42
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 947
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 64
bin: 4.75e1
variant carriers: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3952
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4572
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 29758
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6870
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 442
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3946
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4410
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.178e1

DP
type: SiteQuality
SIO_000300: 6.56397e5

ClippingRankSum
type: SiteQuality
SIO_000300: -2.17e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.94e0

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 5.25e-1

MQ
type: SiteQuality
SIO_000300: 3.04e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 5.99e-2

VQSLOD
type: SiteQuality
SIO_000300: -2.436e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.66e-1

GenotypeQuality
all individuals: 1552
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 22
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 143
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1980
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 61
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 337
bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 114
bin: 8.25e1
variant carriers: 1

GenotypeQuality
all individuals: 1423
bin: 9.75e1
variant carriers: 6

European (Non-Finnish)
type: Population
allele count: 1
allele frequency: 4.360718646432932e-5
allele num: 22932
num of homozygotes: 0

African
type: Population
allele count: 2
allele frequency: 5.662514156285391e-4
allele num: 3532
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3262
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4954
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 3.933910306845004e-4
allele num: 2542
num of homozygotes: 0

Other
type: Population
allele count: 1
allele frequency: 2.890173410404624e-3
allele num: 346
num of homozygotes: 0

East Asian
type: Population
allele count: 4
allele frequency: 1.11358574610245e-3
allele num: 3592
num of homozygotes: 0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.7e-2

MQ
type: SiteQuality
SIO_000300: 3.1e1

VQSLOD
type: SiteQuality
SIO_000300: -5.634e0

ClippingRankSum
type: SiteQuality
SIO_000300: 5.28e-1

MQRankSum
type: SiteQuality
SIO_000300: 2.46e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 2.02e0

FS
type: SiteQuality
SIO_000300: 1.6754e1

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.85e-2

QD
type: SiteQuality
SIO_000300: 7.37e0

DP
type: SiteQuality
SIO_000300: 5.64333e5

GenotypeQuality
all individuals: 1849
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 53
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 67
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 20
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variant carriers: 0

GenotypeQuality
all individuals: 308
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variant carriers: 0

GenotypeQuality
all individuals: 111
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variant carriers: 0

GenotypeQuality
all individuals: 114
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variant carriers: 0

GenotypeQuality
all individuals: 116
bin: 7.25e1
variant carriers: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 344
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 22020
num of homozygotes: 0

Latino
type: Population
allele count: 1
allele frequency: 4.184100418410042e-4
allele num: 2390
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3172
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4710
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3436
num of homozygotes: 0

African
type: Population
allele count: 1
allele frequency: 2.941176470588235e-4
allele num: 3400
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 2.86e0

DP
type: SiteQuality
SIO_000300: 5.54006e5

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -3.96e-2

MQ
type: SiteQuality
SIO_000300: 3.287e1

VQSLOD
type: SiteQuality
SIO_000300: -3.642e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.4e-1

ClippingRankSum
type: SiteQuality
SIO_000300: 2.04e0

MQRankSum
type: SiteQuality
SIO_000300: 1.85e-1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.219e0

GenotypeQuality
all individuals: 40
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 16
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1239
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 332
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variant carriers: 0

GenotypeQuality
all individuals: 140
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variant carriers: 0

GenotypeQuality
all individuals: 19
bin: 5.75e1
variant carriers: 0

GenotypeQuality
all individuals: 115
bin: 8.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 20580
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 4418
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 316
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3186
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2230
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3030
num of homozygotes: 0

East Asian
type: Population
allele count: 2
allele frequency: 6.067961165048543e-4
allele num: 3296
num of homozygotes: 0

VQSLOD
type: SiteQuality
SIO_000300: -3.079e0

InbreedingCoeff
type: SiteQuality
SIO_000300: 3.4e-2

MQRankSum
type: SiteQuality
SIO_000300: 1.35e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 1.1e0

FS
type: SiteQuality
SIO_000300: 0.0e0

QD
type: SiteQuality
SIO_000300: 1.156e1

ClippingRankSum
type: SiteQuality
SIO_000300: -3.91e-1

MQ
type: SiteQuality
SIO_000300: 3.236e1

BaseQRankSum
type: SiteQuality
SIO_000300: -2.736e0

DP
type: SiteQuality
SIO_000300: 5.36321e5

GenotypeQuality
all individuals: 2783
bin: 1.25e1
variant carriers: 0

GenotypeQuality
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bin: 3.75e1
variant carriers: 0

GenotypeQuality
all individuals: 975
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 21249
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variant carriers: 0

GenotypeQuality
all individuals: 46
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 125
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variant carriers: 0

GenotypeQuality
all individuals: 112
bin: 8.25e1
variant carriers: 0

GenotypeQuality
all individuals: 901
bin: 3.25e1
variant carriers: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 16970
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 1590
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 282
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2756
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2800
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3488
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2620
num of homozygotes: 0

BaseQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.76e-2

MQ
type: SiteQuality
SIO_000300: 3.6e1

MQRankSum
type: SiteQuality
SIO_000300: 7.27e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ClippingRankSum
type: SiteQuality
SIO_000300: -7.27e-1

VQSLOD
type: SiteQuality
SIO_000300: -2.939e0

ReadPosRankSum
type: SiteQuality
SIO_000300: 7.27e-1

DP
type: SiteQuality
SIO_000300: 4.97001e5

GenotypeQuality
all individuals: 1351
bin: 2.75e1
variant carriers: 3

GenotypeQuality
all individuals: 835
bin: 3.25e1
variant carriers: 4

GenotypeQuality
all individuals: 15
bin: 5.75e1
variant carriers: 2

GenotypeQuality
all individuals: 2860
bin: 1.25e1
variant carriers: 10

GenotypeQuality
all individuals: 1555
bin: 9.75e1
variant carriers: 157

GenotypeQuality
all individuals: 116
bin: 9.25e1
variant carriers: 13

GenotypeQuality
all individuals: 131
bin: 7.75e1
variant carriers: 11

GenotypeQuality
all individuals: 56
bin: 4.25e1
variant carriers: 15

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2664
num of homozygotes: 0

Latino
type: Population
allele count: 5
allele frequency: 3.355704697986577e-3
allele num: 1490
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 5
allele frequency: 3.108679432976871e-4
allele num: 16084
num of homozygotes: 0

African
type: Population
allele count: 179
allele frequency: 6.499636891793754e-2
allele num: 2754
num of homozygotes: 7

Other
type: Population
allele count: 1
allele frequency: 3.759398496240601e-3
allele num: 266
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 3296
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 2524
num of homozygotes: 0

MQ
type: SiteQuality
SIO_000300: 3.19e1

ClippingRankSum
type: SiteQuality
SIO_000300: 3.58e-1

MQRankSum
type: SiteQuality
SIO_000300: 4.06e-1

DP
type: SiteQuality
SIO_000300: 4.88527e5

VQSLOD
type: SiteQuality
SIO_000300: 4.91e0

BaseQRankSum
type: SiteQuality
SIO_000300: 3.61e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

InbreedingCoeff
type: SiteQuality
SIO_000300: -4.24e-2

QD
type: SiteQuality
SIO_000300: 1.255e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 3.34e-1

GenotypeQuality
all individuals: 817
bin: 1.25e1
variant carriers: 0

GenotypeQuality
all individuals: 345
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 1705
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 234
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3559
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 606
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7412
bin: 3.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3117
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7238
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10684
num of homozygotes: 0

African
type: Population
allele count: 3
allele frequency: 3.935974809761218e-4
allele num: 7622
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 13078
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 56458
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 804
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6184
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.3e-3

DP
type: SiteQuality
SIO_000300: 1.121956e6

FS
type: SiteQuality
SIO_000300: 0.0e0

MQRankSum
type: SiteQuality
SIO_000300: 1.63e0

BaseQRankSum
type: SiteQuality
SIO_000300: 1.49e0

ClippingRankSum
type: SiteQuality
SIO_000300: 6.63e-1

VQSLOD
type: SiteQuality
SIO_000300: -7.872e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: -6.63e-1

QD
type: SiteQuality
SIO_000300: 1.335e1

MQ
type: SiteQuality
SIO_000300: 5.244e1

GenotypeQuality
all individuals: 5298
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1536
bin: 6.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3857
bin: 2.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1435
bin: 1.75e1
variant carriers: 0

GenotypeQuality
all individuals: 1094
bin: 2.5e0
variant carriers: 0

GenotypeQuality
all individuals: 488
bin: 7.75e1
variant carriers: 0

GenotypeQuality
all individuals: 339
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.75e1
variant carriers: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12570
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7408
num of homozygotes: 0

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 2
allele frequency: 3.642987249544627e-5
allele num: 54900
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

QD
type: SiteQuality
SIO_000300: 1.74e0

VQSLOD
type: SiteQuality
SIO_000300: -8.688e-1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

FS
type: SiteQuality
SIO_000300: 6.949e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.376e0

MQ
type: SiteQuality
SIO_000300: 5.523e1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

DP
type: SiteQuality
SIO_000300: 1.144204e6

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

GenotypeQuality
all individuals: 7128
bin: 3.25e1
variant carriers: 1

GenotypeQuality
all individuals: 2481
bin: 5.25e1
variant carriers: 1

GenotypeQuality
all individuals: 12233
bin: 6.25e1
variant carriers: 0

GenotypeQuality
all individuals: 428
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3104
bin: 9.75e1
variant carriers: 0

GenotypeQuality
all individuals: 7086
bin: 3.75e1
variant carriers: 1

GenotypeQuality
all individuals: 214
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 406
bin: 5.75e1
variant carriers: 0

African
type: Population
allele count: 1
allele frequency: 1.349892008639309e-4
allele num: 7408
num of homozygotes: 0

East Asian
type: Population
allele count: 1
allele frequency: 1.431024613623354e-4
allele num: 6988
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6046
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 3
allele frequency: 5.46448087431694e-5
allele num: 54900
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10378
num of homozygotes: 0

South Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 12570
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 798
num of homozygotes: 0

ClippingRankSum
type: SiteQuality
SIO_000300: -3.48e-1

InbreedingCoeff
type: SiteQuality
SIO_000300: 8.200000000000001e-3

FS
type: SiteQuality
SIO_000300: 6.949e0

BaseQRankSum
type: SiteQuality
SIO_000300: -1.376e0

MQ
type: SiteQuality
SIO_000300: 5.523e1

ReadPosRankSum
type: SiteQuality
SIO_000300: 0.0e0

VQSLOD
type: SiteQuality
SIO_000300: -8.688e-1

DP
type: SiteQuality
SIO_000300: 1.144204e6

MQRankSum
type: SiteQuality
SIO_000300: 2.62e-1

QD
type: SiteQuality
SIO_000300: 1.74e0

GenotypeQuality
all individuals: 346
bin: 9.25e1
variant carriers: 0

GenotypeQuality
all individuals: 2635
bin: 4.25e1
variant carriers: 0

GenotypeQuality
all individuals: 229
bin: 8.75e1
variant carriers: 0

GenotypeQuality
all individuals: 987
bin: 5.25e1
variant carriers: 0

GenotypeQuality
all individuals: 490
bin: 7.25e1
variant carriers: 0

GenotypeQuality
all individuals: 8022
bin: 2.25e1
variant carriers: 0

GenotypeQuality
all individuals: 3180
bin: 4.75e1
variant carriers: 0

GenotypeQuality
all individuals: 3111
bin: 9.75e1
variant carriers: 3

East Asian
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7342
num of homozygotes: 0

Latino
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 10758
num of homozygotes: 0

Other
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 816
num of homozygotes: 0

European (Non-Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 57062
num of homozygotes: 0

African
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 7744
num of homozygotes: 0

European (Finnish)
type: Population
allele count: 0
allele frequency: 0.0e0
allele num: 6210
num of homozygotes: 0

South Asian
type: Population
allele count: 3
allele frequency: 2.245845186405151e-4
allele num: 13358
num of homozygotes: 0

InbreedingCoeff
type: SiteQuality
SIO_000300: 1.7e-3

VQSLOD
type: SiteQuality
SIO_000300: -1.507e0

MQ
type: SiteQuality
SIO_000300: 4.76e1

DP
type: SiteQuality
SIO_000300: 1.181159e6

ClippingRankSum
type: SiteQuality
SIO_000300: 9.96e-1

BaseQRankSum
type: SiteQuality
SIO_000300: 3.08e0

QD
type: SiteQuality
SIO_000300: 9.73e0

MQRankSum
type: SiteQuality
SIO_000300: -1.94e-1

FS
type: SiteQuality
SIO_000300: 0.0e0

ReadPosRankSum
type: SiteQuality
SIO_000300: -3.62e-1